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Senior Protein Engineer Jobs in Portland, OR (NOW HIRING)

Senior Protein Engineer information

See Portland, OR salary details

$63.1K

$134.2K

$194.6K

How much do senior protein engineer jobs pay per year?

As of Aug 31, 2026, the average yearly pay for senior protein engineer in Portland, OR is $134,214.00, according to ZipRecruiter salary data. Most workers in this role earn between $110,800.00 and $152,200.00 per year, depending on experience, location, and employer.

What is a senior protein engineer?

Senior Protein Engineers are experienced scientists who design, modify, and optimize proteins for specific industrial, medical, or research applications. They use advanced techniques in molecular biology, biochemistry, and computational modeling to improve protein stability, activity, or specificity. These professionals often lead research projects, mentor junior staff, and collaborate with interdisciplinary teams to bring innovative protein-based solutions to market.

What skills and qualifications are needed to be a senior protein engineer?

To thrive as a Senior Protein Engineer, you need expertise in protein biochemistry, molecular biology, and structural biology, typically supported by a Ph.D. or equivalent experience in a related field. Proficiency in tools such as protein modeling software (e.g., Rosetta, PyMOL), high-throughput screening platforms, and familiarity with analytical instruments like mass spectrometers is essential. Strong problem-solving, collaboration, and project management skills help drive innovation and successful cross-functional teamwork. These skills and qualities are crucial for efficiently designing, optimizing, and characterizing proteins to advance scientific discoveries and product development.

How does a senior protein engineer collaborate with cross-functional teams during the development of new protein therapeutics?

Senior Protein Engineers often work closely with multidisciplinary teams, including molecular biologists, biochemists, computational scientists, and regulatory specialists, to bring new protein therapeutics from concept to reality. They contribute their expertise in protein design and engineering, lead experimental planning, and interpret complex data to guide project direction. Regular meetings and collaborative problem-solving sessions are common, ensuring that project goals align across departments. This collaborative environment fosters innovation, but also requires strong communication and project management skills.

What is the difference between Senior Protein Engineer vs Protein Scientist?

AspectSenior Protein EngineerProtein Scientist
Required CredentialsBachelor's or Master's in Biochemistry, Molecular Biology, or related fields; experience in protein engineeringBachelor's or Master's; often a Ph.D. for advanced research roles; expertise in protein analysis
Work EnvironmentBiotech or pharmaceutical R&D labs, manufacturing facilitiesAcademic labs, research institutions, biotech companies
Employer & Industry UsageUsed in biotech, pharma, and industrial enzyme companiesCommon in academic research, biotech R&D, and pharmaceutical development

While both roles focus on proteins, Senior Protein Engineers typically work on designing and optimizing proteins for industrial applications, whereas Protein Scientists often conduct fundamental research to understand protein functions. The roles overlap in skills and industry but differ in focus and seniority.

How much does a senior protein engineer make?

A senior protein engineer typically earns between $90,000 and $150,000 annually, depending on experience, location, and industry. They often hold advanced degrees and may work in biotech, pharmaceuticals, or research environments that value specialized skills in protein design and analysis.

What are popular job titles related to Senior Protein Engineer jobs in Portland, OR?

For Senior Protein Engineer jobs in Portland, OR, the most frequently searched job titles are:

Senior Technical Product Manager

Absci Corporation

Vancouver, WA • On-site, Remote

$145K - $180K/yr

Full-time

Medical, Dental, Vision

Posted 20 days ago


Job description

About Absci
Absci is a clinical-stage biotechnology company advancing novel therapeutics using generative AI. Our Integrated Drug Creation™ platform combines cutting-edge AI models with a synthetic biology data engine, enabling the rapid design of innovative therapeutics that address challenging therapeutic targets.
Absci is a global company headquartered in Vancouver, WA, and maintains offices in New York City, Switzerland, and Serbia. Learn more at www.absci.com or follow us on LinkedIn (@absci), X (@Abscibio), and YouTube.
Senior Technical Product Manager (AI Research & Development)
Remote within the United States. Hybrid work available in Vancouver, WA; New York City, NY.
We are currently seeking a Senior Technical Product Manager to join our AI Research and Development team. You will be responsible for developing and executing on the vision, strategy, and deployment of both AI and Lab Products at Absci. You will drive small, interdisciplinary teams of Artificial Intelligence (AI) and Machine Learning (ML) Researchers, Software Engineers, Structural Biologists, and Screening Scientists to build delivery platforms that allow us to design, optimize, and validate biologics for treating conditions like cancer, autoimmune diseases, and infectious diseases. You will serve as a bridge between our AI Research and Biologics Discovery Technology teams, leading initiatives surrounding the development and/or application in one of two key areas:
AI-Guided Target Identification: An AI platform that leverages genetic-based evidence to discover novel target-indication pairs and de-risk in vivo or ex vivo pathway validation.
AI-Guided Drug Design: A platform that uses generative AI to design and optimize antibody-based drugs to grow Absci's internal pipeline and deliver on external partnerships.
Responsibilities:
  • Gather and synthesize product requirements from AI, Engineering, and Wet Lab Scientists and Business Development teams, then drive alignment with leadership for actionable product strategy
  • Own product roadmaps with decisive precision and bias for action; make trade-off decisions between competing priorities and risk
  • Partner with managers and technical leads with diverse backgrounds and areas of expertise to establish a cohesive product vision
  • Build detailed roadmaps, backlogs, and execution plans for assigned domain; partner with management to define OKRs and KPIs; track performance and adjust strategy based on data
  • Lead cross-functional teams through product initiatives from conception through deployment and optimization, proactively identifying and removing any blockers
  • Conduct research with product team and potential users to understand needs, pain points, and opportunities
  • Drive adoption and successful deployment of products within internal programs and external partnerships

Qualifications:
  • Bachelor's degree in Computer Science, Bioinformatics, Data Science, Engineering, Life Sciences, or related field
  • At least 5 years of professional experience working on production-grade software or technical products development
  • 3+ years of working or educational experience in AI/ML and/or Protein Engineering
  • Strong technical knowledge to enable effective collaboration with world-class engineers and scientists
  • Proven track record of creating and executing on product roadmaps to deliver high-impact work
  • Demonstrated ability to manage complex stakeholder relationships across diverse teams
  • Excellent written and oral communication skills; ability to explain complex technical and business concepts
  • Excellent organizational skills and ability to manage multiple competing priorities
  • Comfortable working in a fast-paced environment with autonomy, accountability, and bias for action

Preferred (but not required):
  • Masters or PhD degree in relevant field
  • Experience in the Biotech or Pharmaceutical Industries
  • Experience with generative AI (GenAI), NLP, or computer vision, large language models (LLMs), or protein language models
  • Experience with MLOps tools such as Weights & Biases
  • Deep knowledge of bioinformatics, computational protein design, computational genomics, immunology, structural biology, antibody engineering, or related fields
  • Experience with NGS, SPR, or Flow Cytometry data
  • Experience as an agile coach, product owner, or Scrum Master

The salary range for US-based employees in this position is $145,000 - $180,000/year. Competitive equity package applies. Pay offered may vary depending on job-related knowledge, skills, and experience. In addition to equity, compensation packages include a wide range of medical, dental, vision benefits and ability to participate in our employee stock purchase plan.
Legal authorization to work in the United States is required. Absci is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person's race, color, sex, sexual orientation, gender identity or expression, age, religion, national origin, ancestry, ethnicity, disability, veteran status, genetic information, marital status, or any characteristic protected under applicable law. Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which they have applied should make a request to the recruiter or hiring manager, or contact hiring@absci.com.