2

Entry Level Protein Engineer Jobs (NOW HIRING)

Be Seen First

This entry-level position supports the purification and processing of biologic drug substances ... Collaborate with Manufacturing, Quality Assurance, Quality Control, and Engineering teams to ...

New

... protein and strain engineering. ATUM explores novel applications for synthetic genes and the ... This entry-level position is within our production group. The work includes following standard ...

Lab Technician

San Francisco, CA · On-site

$22.50 - $29.75/hr

... protein engineering expertise to unlock proprietary insights that are leveraged to generate ... If you are self-motivated, adaptable, and willing to constantly learn, this entry-level position is ...

Lab Technician

San Francisco, CA

$22.50 - $29.75/hr

... protein engineering expertise to unlock proprietary insights that are leveraged to generate ... If you are self-motivated, adaptable, and willing to constantly learn, this entry-level position is ...

PCR / qPCR * Protein purification and analysis * Cell culture and cell-based assays * Aseptic ... About Actalent Actalent is a global leader in engineering and sciences services and talent ...

... P1 - Entry Level Pro FLSA Code Administrative Patient Sensitive Job Code? No Standard Hours per ... Mitochondrial protein import, organelle proteostasis, or quality control. * Functional genomics:

... P1 - Entry Level Pro FLSA Code Administrative Patient Sensitive Job Code? No Standard Hours per ... Mitochondrial protein import, organelle proteostasis, or quality control. * Functional genomics:

... P1 - Entry Level Pro FLSA Code Administrative Patient Sensitive Job Code? No Standard Hours per ... Mitochondrial protein import, organelle proteostasis, or quality control. * Functional genomics:

Post Doc Res Assoc

Salt Lake City, UT · On-site

$65K - $73K/yr

... P1 - Entry Level Pro FLSA Code Administrative Patient Sensitive Job Code? No Standard Hours per ... Mitochondrial protein import, organelle proteostasis, or quality control. * Functional genomics:

Fermentation Scientist

Plymouth, MN · On-site

$50K - $80K/yr

In this role, you will perform entry level research on a multidisciplinary team to develop, plan ... Master's degree or other post-secondary degree in biochemical engineering, chemical engineering ...

next page

Showing results 1-20

Entry Level Protein Engineer information

See salary details

$30K

$69.4K

$118K

How much do entry level protein engineer jobs pay per year?

As of Jul 17, 2026, the average yearly pay for entry level protein engineer in the United States is $69,362.00, according to ZipRecruiter salary data. Most workers in this role earn between $51,500.00 and $78,500.00 per year, depending on experience, location, and employer.

What types of projects and daily tasks can an entry level protein engineer expect to work on?

As an entry level protein engineer, you can expect to be involved in a variety of tasks such as designing and expressing recombinant proteins, performing mutagenesis experiments, and analyzing protein structure and function using techniques like SDS-PAGE, Western blotting, and spectroscopy. You'll often collaborate closely with senior scientists, molecular biologists, and bioinformaticians to troubleshoot experiments or interpret data. Many entry level roles also include maintaining lab equipment, preparing reagents, and documenting experimental results. These tasks help build a solid foundation of laboratory skills and scientific knowledge, while giving you exposure to the collaborative and interdisciplinary nature of modern protein research.

What is the difference between Entry Level Protein Engineer vs Entry Level Biochemist?

AspectEntry Level Protein EngineerEntry Level Biochemist
Required CredentialsBachelor's in Biochemistry, Molecular Biology, or related field; basic lab skillsBachelor's in Biochemistry, Chemistry, or related field; laboratory experience
Work EnvironmentBiotech or pharmaceutical labs focusing on protein design and engineeringResearch labs, biotech companies, or academic settings studying biochemical processes
Employer & Industry UsageBiotech firms, pharmaceutical companies, research institutionsResearch institutions, biotech companies, academic labs

Entry Level Protein Engineers focus on designing and modifying proteins using computational and laboratory techniques, often working in biotech and pharmaceutical settings. Entry Level Biochemists conduct experiments to understand biochemical processes, working across similar environments. Both roles require a bachelor's degree and lab experience, but Protein Engineers emphasize protein design, while Biochemists focus on biochemical research.

What are the key skills and qualifications needed to thrive as an Entry Level Protein Engineer, and why are they important?

To thrive as an Entry Level Protein Engineer, you need a background in biochemistry, molecular biology, or a related field, with experience in protein expression, purification, and characterization. Familiarity with laboratory techniques such as SDS-PAGE, Western blotting, and use of bioinformatics tools like PyMOL or BLAST is highly valuable. Attention to detail, strong analytical thinking, and effective teamwork are crucial soft skills for this role. These competencies ensure accurate experimental results, efficient collaboration, and the ability to solve complex problems in protein research and development.

What does an entry level protein engineer do?

An entry level protein engineer assists in designing, modifying, and analyzing proteins to improve their functions or create new ones. They typically work in laboratory settings, performing experiments, analyzing data, and collaborating with senior scientists. Their responsibilities may include protein expression, purification, and characterization, as well as using computational tools to model protein structures. Entry level protein engineers play a vital role in research and development in biotechnology, pharmaceuticals, and related industries.
More about Entry Level Protein Engineer jobs
What are the most commonly searched types of Protein Engineer jobs? The most popular types of Protein Engineer jobs are:
Infographic showing various Entry Level Protein Engineer job openings in the United States as of July 2026, with employment types broken down into 1% Locum Tenens, 94% Full Time, 2% Part Time, and 3% Contract. Highlights an 87% Physical, 4% Hybrid, and 9% Remote job distribution, with an average salary of $69,362 per year, or $33.3 per hour.
Scientist - Protein Production

Scientist - Protein Production

Helix Biostructures

Indianapolis, IN • On-site

Full-time

Medical, Dental, Vision, Retirement

Posted 10 days ago


Job description

Salary:

Scientist Protein Production

Helix BioStructures, LLC (HBS) is a contract research organization (CRO) based in Indianapolis, Indiana, providing early drug discovery services to the biopharmaceutical industry. HBS maintains a full suite of services that encompass chemical & structural analysis, protein production, computational modeling, and design. HBSs core and most popular services are structural biology imaging techniques: X-ray Crystallography and Cryo-EM. HBS was founded in 2018 and has grown considerably. We are looking to add a Scientist focused on protein production to join our Indianapolis-based team.


Main Responsibilities


This scientist will support our protein production pipeline by expressing and purifying recombinant proteins in bacterial, insect, and mammalian systems; performing biophysical characterization to assess sample quality and stability; developing and optimizing expression and purification protocols; interfacing with our clients; and writing technical project reports. The scientist will also contribute to improving expression and purification methods to accelerate research processes.

Highly desirable hands-on experiences include:

(a) Experience in recombinant protein expression and purification across bacterial, insect, and mammalian cell lines.

(b) Use of biophysical and analytical techniques (e.g., SDS-PAGE, SEC, Western Blot, TSA, DLS, Mass Spectrometry, and others) to assess protein quality, purity, and stability.

This scientist will employ a range of experimental methods (biochemical, biophysical, and/or computational) to support our clients structure-based drug discovery, antibody discovery, and/or protein engineering. Accordingly, proficiency in recombinant protein expression and purification and a passion for generating high-quality, well-characterized protein reagents are essential. Any structural biology experience (X-ray crystallography or Cryo-EM) is a plus, but is not required for this role. The successful candidate will be a strong technical contributor who can execute reliably at the bench and collaborate with colleagues on multiple projects in parallel. This role is open to candidates ranging from entry-level to experienced scientists; the level of hire, scope, and degree of independence will be determined by the candidates experience and qualifications, with the opportunity to help drive discovery projects from inception through early development.

Additional Responsibilities

  • Express and purify proteins to target quality and yield within industrial timeframes.
  • Document experimental data and communicate research priorities, progress, and results with clients/project teams.
  • Provide technical and scientific input to project teams, with the scope of guidance to other members of the Protein Sciences group, scaling with seniority and experience.
  • The candidate will be responsible for timely updates on project statuses, reporting to their supervisor informally and to Helixs customers by formal report writing and oral presentations.

Required Qualifications

This position is open to candidates ranging from entry-level to experienced scientists. The qualifications below represent the minimum requirements for the role; the final level of hire will be determined based on the candidates experience and qualifications.


  • D. in biochemistry, biophysics, molecular biology, protein engineering, or a related field; OR a Masters degree with 25 years of relevant industrial experience; OR a Bachelors degree with 510 years of relevant industrial experience.
  • Demonstrated competency in recombinant protein expression and purification using bacterial, insect, and mammalian cell lines; hands-on experience across all three systems is strongly preferred.
  • Ability to generate and characterize milligram to gram quantities of high-quality protein reagents for downstream studies.
  • Experience with standard analytical and biophysical techniques (e.g., SDS-PAGE, SEC, Western Blot, TSA, DLS, Mass Spectrometry, and others) for assessing protein quality, purity, and stability during purification.
  • Strong written and oral communication skills.


Additional qualifications


  • Hands-on experience in engineering protein constructs and optimizing the production of protein targets for structural and functional studies.
  • Experience in structural biology is a plus but not required, including protein X-ray crystallography (sample assessment, crystallization, optimization, data collection, and structure determination/refinement) and familiarity with software such as Phenix, CCP4, Coot, and PyMOL.
  • Experience with protein engineering and/or design approaches.
  • Analysis, design, and/or computational approaches to investigate ligand-protein complexes.
  • Experience with Cryo-EM is a plus, especially grid vitrification and screening.
  • Excellent communication, interpersonal, and organizational skills.
  • Willingness to tackle challenging technical problems.

Location



This position is based in Indianapolis, Indiana, and does NOT offer a hybrid option. Interaction with external service vendors is also expected. Candidates must be authorized to work in the United States; Helix BioStructures does NOT provide visa sponsorship for this position.


Physical Requirements

Able to lift 30 lb objects with dimensions 30 inches in height and 18 inches in width.

Able to visualize microscopic objects under microscopes.

Non-standard work schedule, travel, and lab safety


Able to adhere to safe work practices and perform lab work with appropriate personal protective equipment, such as but not limited to safety goggles, facial mask, gloves, lab coat/ protective gowning, and closed-toe shoes. Able to work at flexible hours occasionally when performing time-sensitive experiments.

Other job details

  • Eligible for Relocation Package
  • Competitive Salary + annual bonus
  • Retirement (matching 401K)
  • Health/Dental/Vision Insurance
  • Company Apple Computer

Helix BioStructures, LLC is an equal opportunity employer, and we embrace the increasingly diverse world around us. Helix BioStructures, LLC prohibits unlawful discrimination based on race, color, religion, gender, sexual orientation, gender identity or expression, national origin or ancestry, age, disability, marital status, and veteran status.