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Protein Design Jobs (NOW HIRING)

Protein Design Product Owner What you will do Let'sdo this.Let'schange the world.Within Amgen's Research and Development organization, the Therapeutic Protein Design (TPD) team supports the broad ...

Protein Design Product Owner What you will do Let'sdo this.Let'schange the world.Within Amgen's Research and Development organization, the Therapeutic Protein Design (TPD) team supports the broad ...

Computational Protein Designer

San Francisco, CA · On-site

$24.25 - $29.50/hr

Computational Protein Designer The opportunity We are seeking a Computational Protein Design Scientist to join our team working at the interface of generative AI and synthetic biology. Working ...

The Director, Protein Sciences will integrate target biology insight, computational protein design, cell engineering, and experimental protein sciences to drive the generation of high-quality ...

The Director, Protein Sciences will integrate target biology insight, computational protein design, cell engineering, and experimental protein sciences to drive the generation of high-quality ...

Showing results 21-40

Protein Design information

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$42K

$114.5K

$201.5K

How much do protein design jobs pay per year?

As of Aug 12, 2026, the average yearly pay for protein design in the United States is $114,491.00, according to ZipRecruiter salary data. Most workers in this role earn between $83,500.00 and $144,000.00 per year, depending on experience, location, and employer.

What is the difference between Protein Design vs Protein Engineering?

AspectProtein DesignProtein Engineering
Required CredentialsBiochemistry, Molecular Biology, BioinformaticsBiochemistry, Molecular Biology, Bioinformatics
Work EnvironmentResearch labs, biotech companies, academiaResearch labs, biotech companies, academia
Industry UsageDesigning novel proteins, drug development, synthetic biologyModifying existing proteins for improved function or stability

Protein Design focuses on creating new proteins with specific functions, often using computational methods. Protein Engineering involves modifying existing proteins to enhance or alter their properties. Both roles require similar skills and are used in research, biotech, and pharmaceutical industries, but their goals differ: one designs from scratch, the other optimizes existing proteins.

What are some typical challenges faced by professionals in protein design, and how are they addressed within a team setting?

Professionals in protein design often encounter challenges such as predicting accurate protein folding, ensuring stability, and achieving desired biological activity. These complexities are typically addressed through close collaboration with computational biologists, structural biologists, and experimental scientists. Teams frequently hold cross-functional meetings to troubleshoot issues, share findings, and iterate on design strategies based on laboratory results. This collaborative environment helps leverage diverse expertise and accelerates the development of novel proteins with desired functions.

What are the key skills and qualifications needed to thrive as a protein design scientist, and why are they important?

To thrive as a Protein Design Scientist, you need a strong background in molecular biology, biochemistry, and computational modeling, typically supported by an advanced degree in a relevant field. Proficiency with tools such as Rosetta, PyMOL, and molecular dynamics simulation software, as well as experience with protein expression and purification techniques, is essential. Analytical thinking, problem-solving, and effective communication are important soft skills to drive innovation and collaborate with interdisciplinary teams. These skills are crucial for designing functional proteins, troubleshooting experiments, and advancing research goals in biotechnology and pharmaceutical development.

What is protein design?

Protein design is the process of creating new proteins or modifying existing ones to have specific functions or properties. This can involve using computational tools, laboratory techniques, or a combination of both to predict and engineer amino acid sequences that will fold into desired three-dimensional structures. Protein design is used in various fields, including medicine, biotechnology, and research, to develop novel enzymes, therapeutics, or materials. The field requires a strong understanding of biology, chemistry, and computer science to achieve successful outcomes.
More about Protein Design jobs
What cities are hiring for Protein Design jobs? Cities with the most Protein Design job openings:
What states have the most Protein Design jobs? States with the most job openings for Protein Design jobs include:
Infographic showing various Protein Design job openings in the United States as of August 2026, with employment types broken down into 83% Full Time, 5% Part Time, and 12% Contract. Highlights an 95% In-person, 2% Hybrid, and 3% Remote job distribution, with an average salary of $114,491 per year, or $55 per hour.

Principal Scientist, Protein Design

Moderna Therapeutics

Cambridge, MA • On-site

$142.50 - $256.50/hr

Other

Medical, PTO

Re-posted 12 days ago


Moderna rating

9.2

Company rating: 9.2 out of 10

Based on 10 frontline employees who took The Breakroom Quiz

5th of 86 rated pharmaceutical


Job description

**The Role**Moderna is seeking an individual to provide technical leadership for in vitro selection and cell-surface screening of viral and bacterial antigens. This role will lead the design, execution, and continuous advancement of high-throughput mammalian cell–based screening platforms that interrogate broadly applicable design principles for glycoprotein antigens, enabling antigen optimization, improved expression and durability across multiple programs, and rapid maturation of computationally designed candidates.The perfect candidate will provide technical leadership through direct involvement in the design and execution of complex in vitro selection campaigns, setting experimental strategy and partnering closely with computational protein design teams to ensure designs are evaluated and refined at scale. In addition to antigen-focused efforts, this individual will be cross-trained to support screening of de novo designed proteins, including minibinders and VHHs, as a shared discovery resource. This role is intended for a scientist ready to own and evolve a core discovery capability, led by scientific judgment and execution, and shape in vitro selection integrates with AI- and structure-guided design across Moderna’s pipeline.The candidate in this position will work closely with and report to the Senior Director, Computational Design and In Vitro Selection, and will also work closely with the VP, Protein Design, as well as other members of Research, to advance novel candidates to the clinic, drive exploratory trials to inform the generation of improved vaccine antigens and explore new concepts for mRNA medicines.**Here’s What You’ll Do*** Lead execution of in vitro selection and cell-surface screening campaigns, providing technical leadership through direct involvement in experimental design and execution.* Design and run high-throughput mammalian display campaigns for complex, multimeric glycoproteins.* Build and deploy scalable screening systems that replace resource-intensive plate-based assays.* Develop and operationalize advanced in vitro selection and directed-evolution capabilities, including novel selection pressures and expanded mammalian display modalities.* Serve as a key experimental partner to computational protein design teams, generating high-quality datasets and actionable design feedback.* Provide technical mentorship and scientific guidance to other scientists.* Represent in vitro selection capabilities in cross-functional discovery and platform discussions.* Mentor and technically guide junior scientists to elevate overall design quality.**Here’s What You’ll Need (Basic Qualifications)*** PhD in Immunology, Molecular Biology, Biochemistry, Protein Engineering, or a related field.* 5+ years of post-PhD industry or equivalent experience leading in vitro selection, mammalian cell-surface display, or directed-evolution efforts.* Demonstrated ability to drive complex screening campaigns end-to-end.* Deep expertise in mammalian display systems, high-throughput selection strategies, and experimental assay design.* Strong working knowledge of computational, structure-based, or AI-driven protein design workflows.* Scientific independence, judgment, and ownership consistent with a Principal Scientist role.**Here’s What You’ll Bring to the Table (Preferred Qualifications)*** Expertise with glycoprotein antigen expression and engineering (e.g., strategies around folding, trafficking, cleavage, stability, and glycan impacts).* Strong capabilities in library design and construction (site-saturation, combinatorial, error-prone, DNA assembly), plus NGS-based readouts and quantitative enrichment analysis.* A desire to make an impact as part of a high-growth, transformational company that is Bold, Relentless, Curious, and Collaborative.**Pay & Benefits****At Moderna, we believe that when you feel your best, you can do your best work. That’s why our US benefits and global well-being resources are designed to support you—at work, at home, and everywhere in between.*** Best-in-class healthcare coverage, plus voluntary benefit programs to support your unique needs* A holistic approach to well-being, with access to fitness, mindfulness, and mental health support* Family planning benefits, including fertility, adoption, and surrogacy support* Generous paid time off, including vacation, volunteer days, sabbatical, global recharge days, and a discretionary year-end shutdown* Savings and investment opportunities to help you plan for the future* Location-specific perks and extrasThe salary range for this role is $142,500.00 - $256,500.00. This is the lowest to highest salary we in good faith believe we would pay for this role at the time of this posting. An individual’s position within the salary range will be based on several factors including, but not limited to, specific competencies, relevant education, qualifications, certifications, experience, skills, performance, and business or organizational needs.The successful candidate may be eligible for an annual discretionary bonus, other incentive compensation, or equity award, subject to company plan eligibility criteria and individual performance.**About Moderna**Since our founding in 2010, we have aspired to build the leading mRNA technology platform, the infrastructure to reimagine how medicines are created and delivered, and a world-class team. We believe in giving our people a platform to change medicine and an opportunity to change the world.By living our mission, values, and mindsets every day, our people are the driving force behind our scientific progress and our culture. Together, we are creating a culture of belonging and building an organization that cares deeply for our patients, our employees, the environment, and our communities.We are proud to have been recognized as a Science Magazine Top Biopharma Employer, a Fast Company Best Workplace for Innovators, and a Great Place to Work in the U.S.If you want to make a difference and join a team that is changing the future of medicine, we invite you to visit to learn more about our current opportunities.**Our Working Model**As we build our company, we have always believed an in-person culture is critical to our success. Moderna champions the significant benefits of in-office collaboration by embracing a 70/30 work model. This 70% in-office structure helps to foster a culture rich in innovation, teamwork, and direct mentorship. Join us in shaping a world where every interaction is an opportunity to learn, contribute, and make a meaningful impact.Moderna is a smoke-free, alcohol-free, and drug-free work environment.**Equal Opportunities**Moderna is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person's race, color, sex, gender identity or expression, age, religion, national origin, ancestry or citizenship, ethnicity, disability, military or protected veteran status, genetic information, sexual orientation, marital or familial status, or any other personal characteristic protected under applicable law. Moderna is a place where everyone can grow. If you meet the Basic Qualifications for the role and you would be excited to contribute to our mission every day, please apply!Moderna is an E-Verify Employer in the United States. We consider qualified applicants regardless of criminal histories, consistent with legal requirements.**Accommodations**We’re focused on attracting, retaining, developing, and advancing our employees. By cultivating a workplace that values diverse experiences, backgrounds, and ideas, we create an environment where every employee can contribute their best.Moderna is committed to offering reasonable accommodations to qualified job applicants with disabilities. Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions #J-18808-Ljbffr

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About Moderna

Sourced by ZipRecruiter

In just over a decade, Moderna has evolved from a research-focused company in the messenger RNA (mRNA) field to a leading enterprise with a diverse clinical portfolio of vaccines and therapeutics. With a strong intellectual property portfolio and state-of-the-art manufacturing capabilities, Moderna collaborates with global partners to advance groundbreaking science and achieve rapid scaling of production. Notably, Moderna's mRNA platform has enabled the development of therapies for various diseases, including infectious diseases, immuno-oncology, and cardiovascular conditions. Recognized as a top biopharmaceutical employer, Moderna fosters an inclusive and smoke-free work environment. The company is dedicated to equal employment opportunities and non-discrimination, ensuring that all employees and applicants are treated with respect and without bias based on factors like race, gender, religion, disability, or sexual orientation. Moderna is also committed to providing reasonable accommodations for individuals with disabilities, in accordance with applicable laws. To know more, visit www.modernatx.com.

Industry

Manufacturing

Company size

501 - 1,000 Employees

Headquarters location

Cambridge, MA, US

Year founded

2010

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