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Pharma Process Engineer Jobs in Toronto, ON (NOW HIRING)

Basetwo

Process Modeller (Biologics)

Toronto, ON · On-site

Our team combines expertise across chemical engineering, manufacturing, AI, and software to tackle ... pharma/biologics manufacturing. To be successful in this role you will have: * Masters or PhD in ...

Basetwo

Process Modeller (Biologics)

Toronto, ON · On-site

Our team combines expertise across chemical engineering, manufacturing, AI, and software to tackle ... pharma/biologics manufacturing. To be successful in this role you will have: * Masters or PhD in ...

Leo Pharma

Category Manager -CA

Toronto, ON · Remote

CA$105K - CA$140K/yr

At LEO Pharma, we are seeking a Procurement Category Manager to support our procurement priorities ... Leading sourcing projects, including RFx processes, supplier evaluations, negotiations, and ...

Basetwo

Senior Product Manager

Toronto, ON · On-site

A process engineering background, with hands-on experience in pharma, biologics, or related regulated manufacturing environments * Familiarity with modeling and simulation workflows such as ...

Basetwo

Senior Product Manager

Toronto, ON

A process engineering background, with hands-on experience in pharma, biologics, or related regulated manufacturing environments * Familiarity with modeling and simulation workflows such as ...

Limelight Health

Senior Product Manager

Toronto, ON · On-site

$110 - $170/hr

A process engineering background, with hands-on experience in pharma, biologics, or related regulated manufacturing environments * Familiarity with modeling and simulation workflows such as ...

Genentech

Senior Data Scientist

Mississauga, ON · On-site

CA$156K - CA$290K/yr

You will collaborate with scientists, engineers, business leaders, and fellow data scientists to ... Pharma technical operations, including process development, analytical method development ...

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All JobsPharma Process Engineer JobsPharma Process Engineer Jobs in Toronto, ON

Pharma Process Engineer information

See Toronto, ON salary details

$30.1K

$88.2K

$140.3K

How much do pharma process engineer jobs pay per year?

As of Jul 29, 2026, the average yearly pay for pharma process engineer in Toronto, ON is $88,235.00, according to ZipRecruiter salary data. Most workers in this role earn between $67,758.00 and $103,545.00 per year, depending on experience, location, and employer.

What are some common challenges faced by Pharma Process Engineers when optimizing manufacturing processes?

Pharma Process Engineers often encounter challenges such as maintaining strict regulatory compliance while implementing process improvements and ensuring product quality. Balancing efficiency with adherence to Good Manufacturing Practices (GMP) can be complex, especially during scale-up or technology transfer projects. Additionally, collaborating across multidisciplinary teams—including quality assurance, production, and R&D—requires strong communication skills to align objectives and resolve issues quickly. These challenges make adaptability and attention to detail crucial traits for success in the role.

What does a Pharma Process Engineer do?

A Pharma Process Engineer designs, develops, and optimizes manufacturing processes for pharmaceutical products. They ensure that production processes are efficient, safe, and compliant with regulatory standards like Good Manufacturing Practice (GMP). Their work often involves troubleshooting equipment, scaling up production from laboratory to industrial scale, and implementing process improvements to increase yield and product quality. They also collaborate closely with quality assurance and research teams to ensure that all products meet strict safety and efficacy standards.

What is the difference between Pharma Process Engineer vs Chemical Process Engineer?

AspectPharma Process EngineerChemical Process Engineer
Required CredentialsBachelor's in Chemical, Pharmaceutical, or related field; GMP certification often preferredBachelor's in Chemical Engineering or related field; Professional Engineer (PE) license optional
Work EnvironmentPharmaceutical manufacturing facilities, labs, cleanroomsChemical plants, refineries, manufacturing sites
Industry UsagePharmaceutical, biotech, healthcareChemical, petrochemical, manufacturing
Common Search/ComparisonYesYes

Both Pharma Process Engineers and Chemical Process Engineers work in manufacturing environments requiring chemical engineering knowledge. Pharma Process Engineers focus on pharmaceutical production, adhering to strict GMP standards, while Chemical Process Engineers work across various chemical industries. Their roles overlap in process design and optimization, but Pharma Process Engineers specialize in drug manufacturing processes.

What are the key skills and qualifications needed to thrive as a Pharma Process Engineer, and why are they important?

To thrive as a Pharma Process Engineer, you need a strong background in chemical engineering or pharmaceutical sciences, often supported by a relevant degree and industry experience. Familiarity with process simulation software (such as Aspen Plus), GMP regulations, and validation protocols is typically required. Strong analytical thinking, problem-solving abilities, and effective communication skills set standout professionals apart in this field. These skills and qualities are important because they ensure safe, efficient, and compliant pharmaceutical manufacturing processes.
What are popular job titles related to Pharma Process Engineer jobs in Toronto, ON? For Pharma Process Engineer jobs in Toronto, ON, the most frequently searched job titles are:
What job categories do people searching Pharma Process Engineer jobs in Toronto, ON look for? The top searched job categories for Pharma Process Engineer jobs in Toronto, ON are:
Pharma Process Engineer jobs near you
Infographic showing various Pharma Process Engineer job openings in Toronto, ON as of July 2026, with employment types broken down into 1% Locum Tenens, 96% Full Time, 1% Part Time, and 2% Contract. Highlights an 87% Physical, 5% Hybrid, and 8% Remote job distribution, with an average salary of $88,235 per year, or $42.4 per hour.

Product Engineer (Pharma)

Basetwo

Toronto, ON • On-site

Full-time

Re-posted 17 days ago

Job description

About Basetwo

Basetwo is a fast-growing Toronto-based AI-native company transforming Pharma & Chemical manufacturing. Our platform helps manufacturers accelerate process development, scale-up and tech transfer, improve quality control, and reduce operational risk using digital twins.

We work with some of the world's leading manufacturers to bring modern AI into complex industrial environments. Our team combines deep expertise in chemical engineering, manufacturing, digital twins, and software development to solve high-impact industrial challenges.

At Basetwo, you'll work directly with customers to build and deploy solutions that meaningfully improve how critical pharmaceutical and personal care products are manufactured around the world.

The Role

We're hiring a Product Engineer to work closely with pharmaceutical and chemical manufacturing customers to deploy AI-powered solutions in real lab-scale and GXP environments.

This is a highly cross-functional role that combines engineering expertise, customer engagement, data and simulation analysis, and technical problem-solving. You'll work directly with customer stakeholders - from process engineers to plant leadership - to understand manufacturing challenges, analyze process data, develop simulation models and drive measurable improvements using the Basetwo platform.

The ideal candidate is equally comfortable discussing plant or lab-scale operations with process teams, diving into process data using Python, and translating technical insights into customer value.

Internally, you will function as the engineering subject matter expert and experienced voice of our customers, via demonstrated project experience across Basetwo's key focus areas of pharmaceutical and chemical manufacturing.

Externally, you will help onboard enterprise partners by working with their process engineers and other stakeholders to maximize value derived from the Basetwo platform for process development/scale up or quality control initiatives, either through troubleshooting current workflows or architecting new workflows that could bring value to the customer. 

In collaboration with Sales, Product and Engineering, you will also have the unique opportunity to identify new product use cases, while building and shaping the direction of the Basetwo platform.

What You'll Do


The Product Engineer is the manufacturer's trusted technical advisor for digital twins initiatives using the Basetwo platform. This includes:

1. Leading Customer Success Initiatives
  • Partner directly with pharmaceutical and chemical manufacturing customers to deploy and scale Basetwo solutions
  • Lead technical onboarding and implementation of digital twin projects across pilot, lab, and commercial manufacturing environments
  • Build trusted relationships with process engineers and scientists, operators, and technical leadership teams
  • Identify opportunities for process scale up/tech transfer, operational improvement, and AI-driven insights
  • Translate customer pain points into actionable technical solutions and product feedback
  • Drive successful project execution from initial discovery through deployment and measurable business impact
2. Technical Problem Solving & Communication
  • Analyze manufacturing, process, and lab/DoE datasets to uncover process bottlenecks and optimization opportunities
  • Develop simulations, models, and analytical workflows using Python and the Basetwo platform
  • Work with industrial data systems and historians to integrate and contextualize manufacturing data
  • Collaborate closely with product, engineering, and machine learning teams to improve platform capabilities
  • Communicate technical findings clearly to both technical and non-technical stakeholders
  • Support troubleshooting and root-cause investigations in complex manufacturing environments
  • Contribute to continuous improvement initiatives across customer manufacturing operations

Requirements

  • 5-7+ years of engineering experience in pharmaceuticals and/or chemical manufacturing
  • Strong understanding of plant, pilot, and lab-scale pharmaceutical manufacturing processes
  • Passion for using Python for simulation, modelling, and process analysis
  • Proven ability to understand and analyze process and lab/DoE data
  • Strong communication skills with the ability to work directly with customer stakeholders
  • Proactive problem-solver with a demonstrated track record of driving continuous improvement initiatives
  • Experience working in cross-functional technical environments
  • Knowledge of enterprise historians such as OSIsoft PI, DeltaV, Wonderware, GE Proficy, or similar industrial systems is valuable
  • Fluent is French is an asset

Benefits

Why Join Basetwo?
  • Work on cutting-edge AI applications in pharma manufacturing
  • Collaborate with a highly technical and mission-driven team
  • Solve meaningful problems in pharmaceutical and chemical production
  • Gain exposure to leading global manufacturing organizations
  • Opportunity for ownership and impact in a rapidly growing company
  • Competitive compensation, equity, and benefits package

Apply