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It Applications Manager Jobs in Wisconsin (NOW HIRING)

J. F. Ahern

IT Applications Specialist

Fond Du Lac, WI · On-site +1

We have an exciting opportunity for a IT Applications Specialist located in Fond du Lac, WI. How ... You'll also have the opportunity to write queries, create SSRS reports, manage process automations ...

eTeam

IT Support

Kenosha, WI · On-site

$21.25 - $29.25/hr

The main purpose of this role is to provide Tier 1 and Tier 2 support for various IT applications, including basic PC hardware support and managing access requests. Responsibilities : • Provide ...

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It Applications Manager information

See Wisconsin salary details

$33.3K

$116.1K

$160K

How much do it applications manager jobs pay per year?

As of Aug 6, 2026, the average yearly pay for it applications manager in Wisconsin is $116,113.00, according to ZipRecruiter salary data. Most workers in this role earn between $96,900.00 and $135,800.00 per year, depending on experience, location, and employer.

What are some common challenges an IT Applications Manager faces when integrating new software solutions across departments?

IT Applications Managers often encounter challenges related to aligning new software solutions with existing business processes and ensuring compatibility with legacy systems. Coordinating between various departments to gather requirements and manage expectations can be complex, especially when users have differing needs or priorities. Additionally, ensuring data security and compliance during integration, as well as training staff to effectively use the new applications, are critical aspects that require careful planning and communication.

What are the key skills and qualifications needed to thrive as an IT Applications Manager?

To thrive as an IT Applications Manager, you need expertise in software development, application lifecycle management, and a bachelor's degree in computer science or a related field. Familiarity with systems such as ERP, CRM, project management tools, and certifications like PMP or ITIL are often required. Strong leadership, problem-solving, and communication skills help in managing teams and aligning IT solutions with business needs. These skills are crucial for ensuring efficient application performance, successful project delivery, and maximizing organizational value from IT investments.

What does an IT Applications Manager do?

An IT Applications Manager oversees the implementation, maintenance, and support of software applications within an organization. They are responsible for ensuring that applications run smoothly, meet business requirements, and are updated as needed. This role often involves coordinating with other IT professionals, managing projects, and working with vendors to evaluate and implement new solutions. Additionally, IT Applications Managers may supervise a team and develop strategies to optimize the use of technology to support business goals.

What is the difference between It Applications Manager vs Software Development Manager?

AspectIt Applications ManagerSoftware Development Manager
Primary FocusOverseeing application deployment, maintenance, and supportLeading software development projects and teams
Required SkillsIT infrastructure, application management, vendor coordinationSoftware design, coding, project management
Work EnvironmentIT departments, enterprise environmentsDevelopment teams, tech companies
CertificationsITIL, PMP, relevant vendor certificationsAgile, Scrum, PMP

The main difference is that It Applications Managers focus on managing and supporting existing applications within an organization, ensuring their stability and performance. In contrast, Software Development Managers lead the creation of new software products, overseeing development teams and project timelines. Both roles require strong project management skills and relevant certifications, but their core responsibilities and work environments differ.

What does an IT Applications Manager do?

As an IT applications manager, your primary responsibilities are to manage the development and operational support of computer applications. Your duties are to oversee staff, assist with training of new employees, provide application enhancement, control the release process for applications, and offer ongoing support for internal departments and external users. You collaborate with other teams and vendors to implement changes, updates, and troubleshoot issues to find solutions. As a manager, you also ensure adherence to regulatory policies and procedures within the industry. An IT applications manager also prepares analysis and reports on active systems.

More about It Applications Manager jobs
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It Applications Manager jobs near you
Infographic showing various It Applications Manager job openings in Wisconsin as of August 2026, with employment types broken down into 87% Full Time, 12% Part Time, and 1% Contract. Highlights an 84% Physical, 3% Hybrid, and 13% Remote job distribution, with an average salary of $116,113 per year, or $55.8 per hour.

IT Applications Manager

Select Milk Producers, Inc.

La Crosse, WI • On-site

Full-time

Medical, Dental, Vision, PTO

This job post has expired today. Applications are no longer accepted.

Job description

Shape What's Next at Select Custom Solutions
At Select Custom Solutions, we don't just make ingredients-we create possibilities. From La Crosse, WI, our team brings innovation and expertise to contract manufacturing, branded dairy and non-dairy ingredients, custom blends, and ingredient distribution. With modern facilities and cutting-edge capabilities, we help some of the world's most trusted brands deliver products that make a difference in people's lives.
With a strong focus on growth, innovation, and excellence, Select Custom Solutions offers opportunities to be part of meaningful work that impacts industries worldwide. Whether you're working hands-on in manufacturing or supporting operations, your contributions help drive the future of food and nutrition.
We're proud to be partnered with Select Milk Producers, one of the nation's most progressive dairy cooperatives. With over 110 family-owned dairies and multiple processing plants and joint ventures nationwide, our partnership connects us to a powerful network driving the future of food and nutrition.
Join us-and help shape what's next.
What Select offers you:
Comprehensive benefits package focusing on your physical, financial and emotional health to include the following perks as well as the standard benefit offerings (health, dental, vision, etc.):
  • Paid Time Off
  • Paid Holidays Off
  • Uniform Program
  • Shoe Allowance
  • Onsite Gym
  • Career Advancement Opportunities
  • Leadership Development
  • Opportunities to support our local communities
  • Chance to apply best practices in sustainability and environmental initiatives
  • Commitment to producing high quality nutritious products and providing nourishment around the world

What this role is all about:
We are looking for an IT Applications Manager near La Crosse, WI.
*To be considered, applicants must currently reside within 90 miles of La Crosse, WI. *
Location: This role can be primarily hybrid/remote but would require occasional onsite days.
Schedule: Monday - Friday, regular business hours + on call/weekends as projects dictate
The IT Applications Manager is responsible for the planning, development, support, and enhancement of the organization's business applications, including the ERP system, custom in-house applications, other off-the-shelf business applications, and reporting solutions. This role leads and supervises the applications and development team members, providing direction, coaching, and career development. Working alongside the infrastructure and project management teams and partnering with business owners, the IT Applications Manager ensures that applications, data, and reporting platforms are reliable, secure, and aligned with the current and future needs of the business and oversees development projects from requirements through deployment and operations support.
Job Duties:
  • Plan, direct, and oversee the development, support, and enhancement of the organization's business applications, including the ERP system, custom in-house applications, other off-the-shelf business applications, and reporting solutions.
  • Provide leadership, direction, and day-to-day supervision to the IT applications team
  • Work with development staff, analysts, and business owners to plan and execute enhancement and support projects based on defined requirements and technical specifications; establish realistic estimates and manage efforts against them to keep projects on target to meet deadlines.
  • Ensure that application support activities are appropriately managed to support day-to-day business needs and operations.
  • Provide oversight for all business application platforms to ensure they perform to the needs of the business and remain reliable, secure, and well-maintained.
  • Oversee the design, development, and delivery of data and reporting solutions that provide accurate, consistent, and accessible information for data-driven decision-making.
  • Track and report the status of enhancement and support requests while ensuring that project requirements are adequately defined.
  • Drive application and development planning in alignment with the technical strategies of the business and that considers the future needs of the organization.
  • Evolve existing application systems, integrations, and architecture across ERP, business applications, and reporting systems as needed.
  • Establish and enforce standards, documentation, and best practices for application configuration, development, data governance, and reporting.
  • Collaborate with IT and business teams to gather requirements and translate business needs into functional and technical specifications.
  • Help team members resolve problems, both technical and interpersonal, and provide guidance to coach, motivate, and lead staff to their optimum performance levels and in their career development.
  • With prior approval, evaluate, recommend, and coordinate the purchase of software and services, and manage relationships with external vendors and service providers.
  • Oversee and promote the responsible adoption and use of artificial intelligence (AI) tools and capabilities to improve application development, support, and reporting, and advance departmental and organizational goals.
  • Responsible for employee relations, including work direction of employees, hiring, training, performance reviews, administering policies and procedures, disciplinary action, and compensation recommendations.
  • Direct the implementation of departmental objectives, goals, and policies.
  • Carry out supervisory responsibilities in accordance with the organization's policies, procedures, and guidelines.
  • Understand and adhere to Good Manufacturing Practices.
  • Safety Protocol:
  • Stop any observed unsafe acts and obey facility safety rules and procedures.
  • Correct or report any observed safety hazards.
  • Support safety policies and programs.

Qualifications:
Education Required:
  • Bachelor's Degree in Computer Science, Information Technology, Business Administration, or related field required.
  • Equivalent combination of education and/or experience may be considered.

Experience Required:
  • Minimum five (5) years of experience supporting software development processes (SDLC) required.
  • Minimum one (1) year of experience in a supervisory, lead, or coordinator role preferred
  • Experience supporting, administering, or implementing an ERP system such as Microsoft Dynamics 365 Business Central or a similar ERP.
  • Experience programming in C#.NET, HTML, CSS, JavaScript, or related programming environments, and a solid understanding of Transact-SQL and database administration required.
  • Knowledge of reporting tools, including Power BI or similar systems
  • Experience with software development to integrate ERP and related applications, including working with APIs, required.
  • Understanding of functional business areas such as Accounting, Supply Chain, and Manufacturing required.
  • Enterprise application development experience preferred.

This list of duties and responsibilities is not all-inclusive and may be expanded to include other duties and responsibilities, as management may deem necessary from time to time.
Where you'll be working:
Our La Crosse, WI, plant is home to approximately 330 employees. This facility supplies the food, beverage, and nutritional industries with innovative functional ingredients and superior quality contract manufacturing services.
La Crosse, WI, is nestled between the Mississippi River and the rolling river bluffs. This town is home to a plethora of colleges, high-quality health care, community events, and cultural opportunities. If you want to enjoy outdoor activities there are many opportunities, such as hiking, cycling, skiing, and boating. The town hosts multiple events annually and is famously known for their Oktoberfest celebration as well as offering a minor league baseball team. Visit the La Crosse Chamber site https://www.lacrossechamber.com/ for more information on local events.
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