Foster City, CA · On-site
$80/hr
Associate Scientist - Bioinformatics V / Bioinformatics Engineer Location: Foster City, CA Duration ... solid software engineering practices (Git, testing, documentatio n). • Workflow + compute ...
Foster City, CA · On-site
$80/hr
Associate Scientist - Bioinformatics V / Bioinformatics Engineer Location: Foster City, CA Duration ... solid software engineering practices (Git, testing, documentatio n). • Workflow + compute ...
Bruker Spatial Biology is looking for an entry-level Bioinformatician to join our R&D department ... Evaluate, test, and improve existing internal software solutions, and partner with software teams ...
Bruker Spatial Biology is looking for an entry-level Bioinformatician to join our R&D department ... Evaluate, test, and improve existing internal software solutions, and partner with software teams ...
Bruker Spatial Biology is looking for an entry-level Bioinformatician to join our R&D department ... software teams during active development cycles. • Work cross-functionally with wetlab and ...
Bruker Spatial Biology is looking for an entry-level Bioinformatician to join our R&D department ... software teams during active development cycles. • Work cross-functionally with wetlab and ...
Bruker Spatial Biology is looking for an entry-level Bioinformatician to join our R&D department ... Evaluate, test, and improve existing internal software solutions, and partner with software teams ...
Bruker Spatial Biology is looking for an entry-level Bioinformatician to join our R&D department ... Evaluate, test, and improve existing internal software solutions, and partner with software teams ...
Bruker Spatial Biology is looking for an entry-level Bioinformatician to join our R&D department ... Evaluate, test, and improve existing internal software solutions, and partner with software teams ...
Bruker Spatial Biology is looking for an entry-level Bioinformatician to join our R&D department ... Evaluate, test, and improve existing internal software solutions, and partner with software teams ...
Job Purpose We are seeking a software engineer who is passionate about solving data processing ... Experience in bioinformatics and NGS. * Capable of understanding and translating high-level ...
Job Purpose We are seeking a software engineer who is passionate about solving data processing ... Experience in bioinformatics and NGS. * Capable of understanding and translating high-level ...
Boston, MA · On-site
... software platform ... We have attracted some of the best bioinformatics, engineering, and commercial talent, and we are ...
Boston, MA · On-site
... software platform ... We have attracted some of the best bioinformatics, engineering, and commercial talent, and we are ...
Sc. plus a minimum of 3 years' experience in Bioinformatics, Computer Science, Programming, Software Development, or related field Previous experience with NGS data and associated bioinformatics ...
Sc. plus a minimum of 3 years' experience in Bioinformatics, Computer Science, Programming, Software Development, or related field Previous experience with NGS data and associated bioinformatics ...
The Select Group is seeking an Entry-Level Software Engineer with a strong apt for Object-Oriented Design and a passion for technology in Bellevue, WA . * This enterprise-storage and advanced ...
The Select Group is seeking an Entry-Level Software Engineer with a strong apt for Object-Oriented Design and a passion for technology in Bellevue, WA . * This enterprise-storage and advanced ...
Software Engineer, Entry-Level Overview SimTech, Inc., recognized as one of the 2026 Best Places for Working Parents , is seeking a Software Engineer, Entry-Level to join our dynamic and diverse team ...
Software Engineer, Entry-Level Overview SimTech, Inc., recognized as one of the 2026 Best Places for Working Parents , is seeking a Software Engineer, Entry-Level to join our dynamic and diverse team ...
Software Engineer, Entry-Level Overview SimTech, Inc., recognized as one of the 2026 Best Places for Working Parents , is seeking a Software Engineer, Entry-Level to join our dynamic and diverse team ...
Quick apply
Software Engineer, Entry-Level Overview SimTech, Inc., recognized as one of the 2026 Best Places for Working Parents , is seeking a Software Engineer, Entry-Level to join our dynamic and diverse team ...
Software Engineer, Entry-Level Overview SimTech, Inc., recognized as one of the 2026 Best Places for Working Parents , is seeking a Software Engineer, Entry-Level to join our dynamic and diverse team ...
Software Engineer, Entry-Level Overview SimTech, Inc., recognized as one of the 2026 Best Places for Working Parents , is seeking a Software Engineer, Entry-Level to join our dynamic and diverse team ...
Emeryville, CA · On-site
$131K - $183K/yr
Embedded on a team of bioinformatics data scientists and software engineers, you will integrate the tools you build into our production software ecosystem. This work will improve manufacturing ...
Emeryville, CA · On-site
$131K - $183K/yr
Embedded on a team of bioinformatics data scientists and software engineers, you will integrate the tools you build into our production software ecosystem. This work will improve manufacturing ...
Currently, we are looking for entry-level software programmers, Java Full stack developers, Python/Java developers, data analysts/data scientists, machine learning engineers for full-time positions ...
Currently, we are looking for entry-level software programmers, Java Full stack developers, Python/Java developers, data analysts/data scientists, machine learning engineers for full-time positions ...
Entry Level Software Engineer Company: The Boeing Company The successful candidate for this Entry Level Software Engineer position will join the B-2 Software team located at Tinker AFB in Oklahoma ...
Entry Level Software Engineer Company: The Boeing Company The successful candidate for this Entry Level Software Engineer position will join the B-2 Software team located at Tinker AFB in Oklahoma ...
Dubuque, IA · On-site
$65K - $90K/yr
... Entry Level Software Engineer This position is associated with the design and development of embedded software that controls machine operations and functions. Various development roles are available ...
Dubuque, IA · On-site
$65K - $90K/yr
... Entry Level Software Engineer This position is associated with the design and development of embedded software that controls machine operations and functions. Various development roles are available ...
Concord, NC · On-site
Entry Level Software Engineer Company: The Boeing Company The successful candidate for this Entry Level Software Engineer position will join the B-2 Software team located at Tinker AFB in Oklahoma ...
Concord, NC · On-site
Entry Level Software Engineer Company: The Boeing Company The successful candidate for this Entry Level Software Engineer position will join the B-2 Software team located at Tinker AFB in Oklahoma ...
Foster City, CA · On-site
$81.67/hr
Your main responsibilities as a Bioinformatics Engineer -- T2T Genome Assembly: · Plan assembly ... solid software engineering practices (Git, testing, documentation). · Workflow + compute ...
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Foster City, CA · On-site
$81.67/hr
Your main responsibilities as a Bioinformatics Engineer -- T2T Genome Assembly: · Plan assembly ... solid software engineering practices (Git, testing, documentation). · Workflow + compute ...
Gary, IN · On-site
Required skills for Java/software programmers: * Bachelor's degree or Master's degree in computer ... entry-level position. The additional skills and project work with hands-on experience building ...
Gary, IN · On-site
Required skills for Java/software programmers: * Bachelor's degree or Master's degree in computer ... entry-level position. The additional skills and project work with hands-on experience building ...
Chicago, IL · On-site
Required Skills for Java/Software Programmers: * Bachelors degree or Masters degree in Computer ... entry level position the additional skills and project work with hands on experience building ...
Chicago, IL · On-site
Required Skills for Java/Software Programmers: * Bachelors degree or Masters degree in Computer ... entry level position the additional skills and project work with hands on experience building ...
$43K - $60.8K
6% of jobs
$60.8K - $78.5K
6% of jobs
$93.1K is the 25th percentile. Wages below this are outliers.
$78.5K - $96.3K
15% of jobs
$96.3K - $114.1K
11% of jobs
The median wage is $126.3K / yr.
$114.1K - $131.9K
17% of jobs
$131.9K - $149.6K
13% of jobs
$156.1K is the 75th percentile. Wages above this are outliers.
$149.6K - $167.4K
19% of jobs
$167.4K - $185.2K
10% of jobs
$185.2K - $203K
3% of jobs
$203K - $220.7K
0% of jobs
$220.7K - $238.5K
0% of jobs
$43K
$131.1K
$238.5K
| Aspect | Entry Level Bioinformatics Software Engineer | Bioinformatics Data Analyst |
|---|---|---|
| Required Credentials | Bachelor's in Bioinformatics, Computer Science, or related field; programming skills | Bachelor's in Bioinformatics, Biology, or related field; data analysis skills |
| Work Environment | Develops software tools, collaborates with bioinformatics teams | Analyzes biological data, prepares reports, supports research projects |
| Employer & Industry Usage | Biotech, pharma, research institutions | Research labs, healthcare, biotech companies |
Entry Level Bioinformatics Software Engineers focus on developing and maintaining bioinformatics software tools, requiring programming skills and software development knowledge. Bioinformatics Data Analysts primarily interpret biological data and generate reports, emphasizing data analysis skills. Both roles are common in biotech and research industries but differ in daily tasks and skill sets.
Job Title: Associate Scientist - Bioinformatics V / Bioinformatics Engineer
Location: Foster City, CA
Duration: 12+ Months
Pay rate: $80/hr on w2
Job Descriptio
nBioinformatics Engineer — T2T Genome Assembly (Non model Organisms
)This is a 12 month contract Bioinformatics Engineer role to deliver telomere to telomere (T2T) reference genomes for non model organisms by building and operating long read assembly and curation pipelines using PacBio HiFi and/or Oxford Nanopore, with complementary data (Hi C/Omni C, Strand seq, optical maps, short reads) as needed. You will partner with wet lab and computational teams to troubleshoot complex genomes (polyploidy, high heterozygosity, repeats) and package results for internal and external release
.
Key Responsibiliti
es•Plan assembly approaches for non model organisms (data QC, genome profiling, contamination screening, coverage targets) and advise sequencing strateg
y.•Run and iterate long read assemblies and consensus refinement (e.g., hifiasm/Verkko/Flye/Canu; polishing as appropriate) toward chromosome scale, T2T quality result
s.•Resolve haplotypes and complex ploidy/heterozygosity (e.g., trio binning; Hi C/Strand seq assisted phasing) and deliver haplotype resolved assemblies when require
d.•Scaffold and curate assemblies with long range data (e.g., Hi C/Omni C, Strand seq, optical maps): detect/resolve mis joins, close gaps where feasible, and document curation decision
s.•Benchmark quality and completeness (e.g., k mer spectra/Merqury, BUSCO, QUAST, read mapping), including repeat/centromere/telomere assessments to guide iterative improvement
s.•Productionize workflows (Nextflow/Snakemake/WDL) with containers (Docker/Singularity) across on prem HPC and AWS; produce clear reports, docs, and release package
s.
Required Qualificati
ons•PhD in bioinformatics, computational biology, computer science, or related fie
ld.•Proven de novo assembly experience on long reads (PacBio HiFi and/or ONT), including tuning and iterative improveme
nt.•Assembly QC/validation expertise and ability to diagnose common failure modes in complex genom
es.•Strong scripting/programming skills (Python and/or Bash) in Linux; solid software engineering practices (Git, testing, documentatio
n).•Workflow + compute operations experience: Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scali
ng.
Preferred Qualificat
ions•Deep genome assembly and/or annotation experience in non model organisms (repeat annotation and evidence driven gene annotation is a pl
us).•Demonstrated progress toward T2T completeness (telomeres/centromeres/segmental duplications) and chromosome scale scaffold
ing.•Evidence of impact (reference releases, preprints/publications, community datasets) is a p
lus.Additional Skills (Nice to H
ave)•Annotation evidence integration by RNA-Seq and delivery of genome browser enabled tra
cks.•AWS pipeline operations (S3 data transfer, Batch or HealthOmics) and strong cross functional communication (clear status updates, documentation, handof
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ACL Digital is a global digital technology firm based in San Jose, CA, US, operating within the IT and services industry. The company offers a broad spectrum of services and solutions, including digital transformation, product engineering, industry solutions, and design-led experiences, among others. ACL Digital has its roots established in 1991 with the aim to become a leading-edge innovator in the digital space and has since grown significantly to work with an array of global customers. The company's mission incorporates a commitment to aiding customers to achieve their business goals by adopting and accelerating their digital transformation journeys.
Technology, communication and media
1,001 - 5,000 Employees
San Jose, CA, US
1992
