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Entry Level Bioinformatics Software Engineer Jobs in Washington, DC

Axle

Bioinformatics Scientist

Bethesda, MD · On-site

With experts in biomedical science, software engineering, and program management, we focus on ... Bioinformatics Scientist To be considered for this position, please upload a document as your Cover ...

Axle

Bioinformatics Scientist

Bethesda, MD

With experts in biomedical science, software engineering, and program management, we focus on ... Bioinformatics Scientist To be considered for this position, please upload a document as your Cover ...

Axle

Bioinformatics Scientist

Bethesda, MD

With experts in biomedical science, software engineering, and program management, we focus on ... Bioinformatics Scientist To be considered for this position, please upload a document as your Cover ...

Anthem Engineering

Software Engineer

Chantilly, VA · On-site

Software developer roles and responsibilities include providing expertise in the full software ... Experience developing in an Agile environment Level: Entry Level - SME Clearance: Active security ...

Guidehouse

Bioinformatics Scientist

Bethesda, MD

$65K - $108K/yr

Provide programming and troubleshooting support to the Federal Government in the dissemination of ... and programmatic software applications. * Present research findings at internal meetings ...

Guidehouse

Bioinformatics Scientist

Bethesda, MD · On-site

$65K - $108K/yr

Provide programming and troubleshooting support to the Federal Government in the dissemination of ... and programmatic software applications. * Present research findings at internal meetings ...

Anthem Engineering

Software Engineer

Chantilly, VA

Software developer roles and responsibilities include providing expertise in the full software ... Experience developing in an Agile environment Level: Entry Level - SME Clearance: Active security ...

Anthem Engineering

Software Engineer

Chantilly, VA · On-site

Software developer roles and responsibilities include providing expertise in the full software ... Experience developing in an Agile environment Level: Entry Level - SME Clearance: Active security ...

SZNS Solutions LLC

Software Engineer

Reston, VA · On-site

... an Entry-Level Software Engineer to join our growing team! As a member of our dynamic and fast-paced environment, you'll have the opportunity to contribute to exciting projects in cloud computing ...

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All JobsBioinformatics Software Engineer JobsEntry Level Bioinformatics Software Engineer JobsEntry Level Bioinformatics Software Engineer Jobs in Washington, DC

Entry Level Bioinformatics Software Engineer information

See Washington, DC salary details

$48.7K

$148.4K

$270.1K

How much do entry level bioinformatics software engineer jobs pay per year?

As of Aug 6, 2026, the average yearly pay for entry level bioinformatics software engineer in Washington, DC is $148,430.00, according to ZipRecruiter salary data. Most workers in this role earn between $108,700.00 and $177,800.00 per year, depending on experience, location, and employer.

What is the difference between Entry Level Bioinformatics Software Engineer vs Bioinformatics Data Analyst?

AspectEntry Level Bioinformatics Software EngineerBioinformatics Data Analyst
Required CredentialsBachelor's in Bioinformatics, Computer Science, or related field; programming skillsBachelor's in Bioinformatics, Biology, or related field; data analysis skills
Work EnvironmentDevelops software tools, collaborates with bioinformatics teamsAnalyzes biological data, prepares reports, supports research projects
Employer & Industry UsageBiotech, pharma, research institutionsResearch labs, healthcare, biotech companies

Entry Level Bioinformatics Software Engineers focus on developing and maintaining bioinformatics software tools, requiring programming skills and software development knowledge. Bioinformatics Data Analysts primarily interpret biological data and generate reports, emphasizing data analysis skills. Both roles are common in biotech and research industries but differ in daily tasks and skill sets.

How to become an entry level bioinformatics software engineer?

To become an entry-level bioinformatics software engineer, candidates typically need a bachelor's degree in bioinformatics, computer science, or a related field. Developing skills in programming languages such as Python or R, understanding biological data analysis, and gaining experience with bioinformatics tools and databases are essential. Internships, coding projects, and familiarity with Linux environments can also improve job prospects.

Is it hard to get a job in bioinformatics?

Securing an entry-level bioinformatics software engineer position can be competitive due to high demand for skills in programming, data analysis, and biological knowledge. Candidates with a strong foundation in programming languages like Python or R, experience with genomic data, and relevant internships or certifications often have better chances of employment.
What are the most commonly searched types of Bioinformatics Software Engineer jobs in Washington, DC? The most popular types of Bioinformatics Software Engineer jobs in Washington, DC are:
What are popular job titles related to Entry Level Bioinformatics Software Engineer jobs in Washington, DC? For Entry Level Bioinformatics Software Engineer jobs in Washington, DC, the most frequently searched job titles are:
What job categories do people searching Entry Level Bioinformatics Software Engineer jobs in Washington, DC look for? The top searched job categories for Entry Level Bioinformatics Software Engineer jobs in Washington, DC are:
Entry Level Bioinformatics Software Engineer jobs near you
Infographic showing various Entry Level Bioinformatics Software Engineer job openings in Washington, DC as of August 2026, with employment types broken down into 50% Full Time, and 50% Part Time. Highlights an 100% In-person job distribution, with an average salary of $148,430 per year, or $71.4 per hour.

Bioinformatics Scientist

Axle

Bethesda, MD • On-site

Full-time

Medical, Dental, Vision, Retirement, PTO

Re-posted 9 days ago

Job description

(ID: 2026-1976)
Axle is a bioscience and information technology company that offers advancements in translational research, biomedical informatics, and data science applications to research centers and healthcare organizations nationally and abroad. With experts in biomedical science, software engineering, and program management, we focus on developing and applying research tools and techniques to empower decision-making and accelerate research discoveries. We work with some of the top research organizations and facilities in the country including multiple institutes at the National Institutes of Health (NIH).
Benefits We Offer:
  • 100% Medical, Dental & Vision Coverage for Employees
  • Paid Time Off and Paid Holidays
  • 401K match up to 5%
  • Educational Benefits for Career Growth
  • Employee Referral Bonus
  • Flexible Spending Accounts:
    • Healthcare (FSA)
    • Parking Reimbursement Account (PRK)
    • Dependent Care Assistant Program (DCAP)
    • Transportation Reimbursement Account (TRN)

Axle is seeking a highly ambitious, adaptable, structured, and detail-oriented Bioinformatics Scientist to join our vibrant team at the National Institutes of Health (NIH), National Institute of Allergy and Infectious Diseases (NIAID), Division of Intramural Research (DIR), Research Technologies Branch (RTB), Integrated Data Sciences Section (IDSS) in Bethesda, MD.
Cover Letter Required - Please Answer the Following Questions and submit application at: Bioinformatics Scientist
To be considered for this position, please upload a document as your Cover Letter that answers the six questions below. Applications submitted without this document will not be considered.
  1. What experience do you have working with large datasets and compute clusters?
  2. Describe your experience building workflows/pipelines and/or using bioinformatics software and tools to analyze data.
  3. What programming languages are you comfortable using for bioinformatics data analysis?
  4. What bioinformatics areas are you familiar with? (e.g., single cell, bulk genomics, transcriptomics, epigenetics, flow, spatial, metagenomics, etc.)
  5. What life science disciplines do you have experience in? (e.g., immunology, infectious disease, cancer research, etc.)
  6. Provide examples of basic machine learning/AI concepts and/or how you've applied them in bioinformatics data analysis.

Responsibilities:
  • Address bioinformatics, scientific computing, and data analysis needs of users within the Division of Intramural Research (DIR) at NIAID and their collaborators by lending expertise in the proper statistical design of biological experiments involving high-throughput genome-scale technologies, data mining and knowledge discovery techniques, automated workflow development, statistical and scientific experimental design consulting.
  • Provide bioinformatics support to include somatic and germline variant calling and analysis, single-cell and bulk gene expression analysis, de novo assembly of genomes and transcriptomes, comparative genomics of model and non-model organisms, proteomics, ChIP-seq, ATAC-seq, and the development of high-throughput pipelines for the analysis of the above data modalities.
  • Provide programming and troubleshooting support to the Research Technologies Branch (RTB) of the National Institute of Allergy and Infectious Diseases (NIAID) and collaborating Institutes in the dissemination of research data.
  • Perform computational data analysis on genomic and clinical research data.
  • Work with staff on scientific programming and experimental design. Provide statistical support/analysis on research data.
  • Contribute to and co-author scientific publications in leading peer-reviewed journals.
  • Contribute to the development of a scalable and flexible resource to provide NGS bioinformatics, structural biological and computational, machine learning data support to NIAID scientists and investigators.
  • It is expected that the bioinformatics scientist will need strong skills in the following:
    • NGS analysis (whole-exome, whole-genome, RNA-seq, ChIP-Seq, both long- and short-read technologies, etc.)
    • Statistical modeling
    • Scripting
    • Biological interpretation

Specific Qualifications:
  • Ability to obtain and maintain a Public Trust Security clearance
  • Minimum Bachelor's degree in related field, Master's or Ph.D. preferred
  • 4+ years of experience in bioinformatics
  • 2+ years of experience developing and maintaining production bioinformatics pipelines
  • Expert in two (2) of the following languages: Python, R, C/C++, sh/bash
  • Experience building images using one (1) of the following: Docker, Podman, Singularity/Apptainer
  • Expert in one (1) pipeline framework: Snakemake, Nextflow, CWL/WDL
  • Expertise building technical and user documentation for tools, pipelines, and applications
  • Experience building pipelines locally on-premise using available HPC infrastructure
  • Experience building pipelines/applications in the Cloud with AWS/GCP/Azure is a plus
  • Experience building applications using one (1) of the following frameworks is a plus: Django, Flask, RShiny, Electron, Flutter, React
  • Experience working in a laboratory setting is a plus but not required

Disclaimer: The above description is meant to illustrate the general nature of work and level of effort being performed by individuals assigned to this position or job description. This is not restricted as a complete list of all skills, responsibilities, duties, and/or assignments required. Individuals may be required to perform duties outside of their position, job description or responsibilities as needed.
The diversity of Axle's employees is a tremendous asset. We are firmly committed to providing equal opportunity in all aspects of employment and will not tolerate any illegal discrimination or harassment based on age, race, gender, religion, national origin, disability, marital status, covered veteran status, sexual orientation, status with respect to public assistance, and other characteristics protected under state, federal, or local law and to deter those who aid, abet, or induce discrimination or coerce others to discriminate.
Accessibility: If you need an accommodation as part of the employment process please contact: careers@axleinfo.com
This role has a market-competitive salary with an anticipated base compensation range listed below. Actual salaries will vary depending on a candidate's experience, qualifications, skills, and location.
Salary Range
$120,000-$130,000 USD

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