1

Clinical Application Manager Jobs in Indiana (NOW HIRING)

As a Manager, Clinical Applications , you will lead a team of Clinical Application Specialists across the Western U.S. region , providing both people leadership and technical oversight to drive the ...

next page

Showing results 1-20

Clinical Application Manager information

See Indiana salary details

$37.6K

$115.6K

$192.2K

How much do clinical application manager jobs pay per year?

As of Aug 12, 2026, the average yearly pay for clinical application manager in Indiana is $115,583.00, according to ZipRecruiter salary data. Most workers in this role earn between $91,800.00 and $135,100.00 per year, depending on experience, location, and employer.

What is the difference between Clinical Application Manager vs Clinical Systems Specialist?

AspectClinical Application ManagerClinical Systems Specialist
CredentialsHealthcare IT certifications, clinical backgroundIT certifications, clinical knowledge
Work EnvironmentHealthcare facilities, hospitals, clinicsHealthcare IT departments, vendor sites
Employer & IndustryHospitals, healthcare providersHealthcare IT vendors, hospitals
Primary FocusOverseeing clinical application implementation and supportSupporting and troubleshooting clinical systems

The Clinical Application Manager primarily manages the implementation, support, and optimization of clinical software in healthcare settings, ensuring clinical workflows are supported effectively. In contrast, the Clinical Systems Specialist focuses on technical support, troubleshooting, and system maintenance. Both roles require clinical and technical knowledge but differ in their scope of responsibilities and focus areas.

What does a clinical application manager do?

A Clinical Application Manager oversees the implementation, maintenance, and optimization of clinical software systems within healthcare organizations. They work closely with clinical staff, IT teams, and vendors to ensure that applications such as electronic health records (EHRs) and other clinical tools support patient care effectively and comply with regulations. Their responsibilities also include training staff, troubleshooting issues, and managing upgrades or new deployments to ensure seamless clinical operations.

What skills and qualifications are needed to be a clinical application manager?

To thrive as a Clinical Application Manager, you need a solid background in healthcare IT, clinical workflows, and project management, often supported by a degree in health informatics or related fields. Familiarity with electronic health record (EHR) systems, clinical software, and certifications like PMP or Epic certification are typically required. Strong leadership, communication, and problem-solving skills help manage teams and facilitate collaboration between clinical staff and IT professionals. These skills and qualifications are essential to ensure smooth implementation, optimization, and support of clinical applications that enhance patient care and operational efficiency.

How does a clinical application manager collaborate with clinical staff and IT teams?

A Clinical Application Manager plays a central role in bridging the gap between clinical staff and IT teams during the rollout of new healthcare applications. They gather feedback from clinicians to ensure the software meets practical workflow needs, while also working closely with IT to address technical requirements and troubleshoot issues. Regular meetings, training sessions, and hands-on support are common methods used to facilitate smooth adoption and ongoing optimization. This collaboration is crucial for minimizing disruptions to patient care and maximizing the value of the technology investment.
What are the most commonly searched types of Clinical Application jobs in Indiana? The most popular types of Clinical Application jobs in Indiana are:
What cities in Indiana are hiring for Clinical Application Manager jobs? Cities in Indiana with the most Clinical Application Manager job openings:
Infographic showing various Clinical Application Manager job openings in Indiana as of August 2026, with employment types broken down into 88% Full Time, 9% Part Time, and 3% Contract. Highlights an 72% In-person, 7% Hybrid, and 21% Remote job distribution, with an average salary of $115,583 per year, or $55.6 per hour.

Clinical Application Analyst - Beaker

Deaconess

Evansville, IN • On-site

Full-time

Re-posted 22 days ago


Deaconess Health System rating

6.7

Company rating: 6.7 out of 10

Based on 157 frontline employees who took The Breakroom Quiz

531st of 887 rated healthcare providers


Job description

Help Advance Laboratory Excellence Through Technology
We are seeking a detail-oriented and technically skilled Clinical Application Analyst - Beaker to join our Digital Technology Services (DTS) team. In this role, you will support, optimize, and enhance the technology that powers laboratory operations across our health system.
Working closely with laboratory leaders, clinicians, and technology teams, you will help ensure that Beaker and related laboratory applications are configured, maintained, and improved to support efficient workflows, accurate data, and exceptional patient care. Your expertise will play a critical role in connecting technology and laboratory operations to improve both the user experience and clinical outcomes.
This position is ideal for someone who enjoys problem-solving, system optimization, collaboration, and applying technology to improve healthcare delivery.
What You'll Do
  • Configure, build, maintain, and optimize Beaker and related laboratory applications
  • Support laboratory workflows by ensuring systems operate reliably, accurately, and efficiently
  • Troubleshoot production issues and provide ongoing application support, maintenance, and upgrades
  • Collaborate with laboratory leadership, clinicians, and DTS teams to identify opportunities for workflow improvements and system enhancements
  • Support new implementations, upgrades, integrations, and process improvement initiatives
  • Monitor and troubleshoot interfaces and data exchange between laboratory and third-party systems
  • Assist with system testing, validation, patching, and security-related activities
  • Maintain documentation, workflows, build standards, and support materials
  • Ensure data integrity and system performance across laboratory applications
  • Serve as a technical resource for laboratory application functionality and best practices
  • Mentor and provide guidance to team members on laboratory workflows and application support processes
  • Support compliance with organizational, regulatory, and security requirements
What We're Looking For
  • Associate's degree in Information Technology, Laboratory Science, or a related field
  • Three or more years of experience supporting laboratory information systems or clinical applications
  • Strong understanding of laboratory workflows, healthcare technology, and data integrity principles
  • Experience supporting Beaker, laboratory information systems, or similar clinical applications preferred
  • Strong analytical, troubleshooting, and problem-solving skills
  • Ability to manage multiple priorities while maintaining attention to detail
  • Effective communication and collaboration skills with both technical and non-technical stakeholders
  • Experience supporting application upgrades, testing, and system implementations preferred
  • Commitment to customer service, continuous improvement, and teamwork

Preferred:
  • Bachelor's degree in a related field
  • Experience with Epic Beaker or other laboratory information systems
  • Experience with healthcare system integrations and interface support
  • Knowledge of laboratory regulatory and compliance requirements
What We Offer
  • An opportunity to directly support laboratory teams and the technology that impacts patient care every day
  • Meaningful work that combines healthcare, technology, and process improvement
  • Collaboration with laboratory professionals, clinicians, and healthcare technology experts
  • Exposure to enterprise healthcare applications, integrations, and innovative technology solutions
  • Opportunities to lead system enhancements, workflow optimization efforts, and strategic projects
  • Professional growth within healthcare IT, clinical informatics, and application management
  • Flexible hybrid or remote work opportunities based on location
  • A supportive team environment focused on learning, innovation, and continuous improvement
  • A stable healthcare organization committed to delivering high-quality care through technology and teamwork

Equal Opportunity Employer
This employer is required to notify all applicants of their rights pursuant to federal employment laws. For further information, please review the Know Your Rights notice from the Department of Labor.

What Deaconess Health System employees say

Pay

Benefits

Hours and flexibility

Workplace

Get the full story on Breakroom