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Bioinformatics Engineer Jobs in California (NOW HIRING)

ChromoLogic

Senior Scientist, Bioinformatics

Monrovia, CA · On-site

$90K - $120K/yr

We are seeking an innovative and highly motivated Senior Scientist, Bioinformatics to lead the ... Strong proficiency in Python, R, or similar programming languages * Experience applying machine ...

ChromoLogic

Senior Scientist, Bioinformatics

Monrovia, CA · On-site

$90K - $120K/yr

We are seeking an innovative and highly motivated Senior Scientist, Bioinformatics to lead the ... Strong proficiency in Python, R, or similar programming languages * Experience applying machine ...

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Bioinformatics Engineer information

See California salary details

$42.4K

$129.3K

$235.4K

How much do bioinformatics engineer jobs pay per year?

As of Sep 15, 2026, the average yearly pay for bioinformatics engineer in California is $129,337.00, according to ZipRecruiter salary data. Most workers in this role earn between $94,700.00 and $154,900.00 per year, depending on experience, location, and employer.

What is a bioinformatics engineer?

A Bioinformatics Engineer is a professional who combines expertise in computer science, statistics, and biology to develop software tools and algorithms for analyzing biological data. They often work with large datasets such as genomic sequences, protein structures, and clinical information to help scientists make sense of complex biological systems. Their work is essential in fields like genomics, personalized medicine, and drug discovery, where managing and interpreting vast amounts of data is crucial. Bioinformatics Engineers may also collaborate with researchers to design experiments and interpret results, bridging the gap between biology and technology.

What are the key skills and qualifications needed to thrive as a bioinformatics engineer?

To thrive as a Bioinformatics Engineer, you need a strong background in biology, computer science, and statistics, often supported by a degree in bioinformatics or a related field. Experience with programming languages such as Python or R, familiarity with databases, and knowledge of tools like BLAST, Bioconductor, or next-generation sequencing (NGS) analysis platforms are typically required. Strong problem-solving, analytical thinking, and effective communication skills help you collaborate with interdisciplinary teams and convey complex findings. These skills and qualifications are essential for efficiently analyzing biological data, developing robust computational tools, and advancing research in genomics and life sciences.

What are some common challenges faced by bioinformatics engineers when integrating new data sources into existing pipelines?

Bioinformatics Engineers often encounter challenges such as data format inconsistencies, varying quality of datasets, and the need to ensure compatibility with existing analysis pipelines. Integrating new data sources may require custom scripts or tools for parsing and preprocessing, as well as thorough validation to maintain reproducibility and reliability of results. Collaboration with wet-lab scientists and software engineers is essential to clarify data requirements and streamline the integration process.

What is the difference between Bioinformatics Engineer vs Bioinformatics Analyst?

AspectBioinformatics EngineerBioinformatics Analyst
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fields; programming skillsBachelor's or Master's in Bioinformatics, Biology, or related fields; data analysis skills
Work EnvironmentResearch labs, biotech companies, pharmaceutical firmsResearch institutions, healthcare organizations, biotech companies
Employer & Industry UsageDevelops tools, pipelines, and software for biological data analysisInterprets data, performs statistical analysis, and reports findings

While both roles require a background in bioinformatics and involve working with biological data, Bioinformatics Engineers focus on developing software and tools, whereas Bioinformatics Analysts primarily analyze and interpret data to support research and decision-making.

What does a bioinformatics engineer do?

A bioinformatics engineer develops and applies computational tools and algorithms to analyze biological data, such as genetic sequences and molecular structures. They often work with programming languages like Python or R, utilize databases, and collaborate with biologists to interpret data for research or medical purposes.
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Bioinformatics Engineer jobs near you
Infographic showing various Bioinformatics Engineer job openings in California as of August 2026, with employment types broken down into 87% Full Time, 8% Part Time, and 5% Contract. Highlights an 85% Physical, 5% Hybrid, and 10% Remote job distribution, with an average salary of $129,337 per year, or $62.2 per hour.

Bioinformatics Scientist II

El Monte, CA • On-site

Fulgent Therapeutics LLC
Chemical Manufacturing • 1 - 10 employees
Learn more about Fulgent Therapeutics LLCexternal

Other

This job post has expired today. Applications are no longer accepted.

Job description

As a Bioinformatics Scientist, you will collaborate in cross‑functional teams to design, implement, and continually improve advanced computational pipelines for high‑throughput analysis of multiple types of NGS data. You will refine methodologies for data analysis, processing, visualization, and storage, and strive to maximize efficiency, quality, reliability, and customer usability and satisfaction.

Research and Development
  • Investigate and compare available algorithms, methods, and data sources.
  • Make recommendations for pipeline component improvements or new pipelines.
  • Write SOPs for new or updated pipeline components or new pipelines.
  • Write specifications for implementation by software developers.
  • Oversee pipeline development and integration.
Production and Customer Support
  • Investigate and resolve analysis and pipeline production issues.
  • Review client projects for compatibility with current pipelines, make recommendations, and implement customizations as needed.
  • Oversee sequencing service projects, ensuring timely processing, quality results, and client satisfaction.
  • Support software and LIMS developers in automation efforts.
  • Perform specialized analyses as needed for specific projects.
  • Keep up‑to‑date with current best practices and emerging methods.
  • Treat data with a high level of integrity and ethics.
Data Maintenance
  • Investigate available annotation and reference data sources.
  • Validate and deploy/update selected data sources.
  • Write reports detailing validation/update methodology and results.
  • Write SOPs for updating existing or new data sources.
Validation
  • Develop appropriate procedures for testing and validation of new or updated pipelines or pipeline components.
  • Document and maintain data used for testing and validation.
  • Write validation reports detailing validation methodology and results.
Qualifications
  • Ph.D. degree from an accredited institution in Bioinformatics, Biostatistics, or related field.
  • 3+ years of experience in a related scientific discipline (Bioinformatics preferred).
  • Experience analyzing multiple types of next‑generation sequencing (NGS) data and facility with statistics for big data analysis and multi‑omics data integration.
  • Strong hands‑on skills in bioinformatics databases, bioinformatics tools, and relevant programming languages.
  • Must enjoy working in a multi‑disciplinary and collaborative environment.
  • Ability to troubleshoot both individually and as part of a team.
  • Excellent oral and written skills with the ability to communicate in an open, transparent, timely, and consistent manner.
  • Experience in team software development and integration projects is a plus.

Reports to: Senior Bioinformatics II

Fulgent Therapeutics LLC is an Equal Employment Opportunity Employer.

The work environment characteristics described here are representative of those an employee encounters while performing the essential functions of this job. Reasonable accommodations may be made to enable qualified individuals with disabilities to perform the essential functions. The term “qualified individual with a disability” means an individual with a disability who, with or without reasonable accommodation, can perform the essential functions of the position.

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