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Automation Engineer Iii Jobs (NOW HIRING)

AccuScan Sciences

Automation Engineer III

Milpitas, CA · On-site

As an Automation Engineer III at AccuScan Sciences you will assume a strategic role, responsible for the advanced operation, optimization, and innovation of automated workflows for nucleic acid ...

AccuScan Sciences

Automation Engineer III

Milpitas, CA · On-site

As an Automation Engineer III at AccuScan Sciences you will assume a strategic role, responsible for the advanced operation, optimization, and innovation of automated workflows for nucleic acid ...

Whelen Engineering

Automation Engineer III

NH · On-site

Automation Engineer III Department: Manufacturing Engineering Employment Type: Full Time Location: Charlestown, NH Description Design, fabricate and assemble the mechanical elements of automated ...

Faith Technologies Inc

Automation Engineer III

Menasha, WI · On-site

$90 - $120/hr

The Automation Engineer III is responsible for the software design and implementation, and support of automation and process control systems projects including new installations, modification s , and ...

Baylor Genetics

Automation Engineer III

Houston, TX · On-site

JOB SUMMARY The Automation Engineer III assumes a strategic role, responsible for the advanced operation, optimization, and innovation of automated workflows for nucleic acid extractions, NGS, and ...

Baylor Genetics

Automation Engineer III

Houston, TX · On-site

$80 - $100/hr

Headquarters Baylor Genetics Houston, TX 77021, USA Description Job Summary The Automation Engineer III assumes a strategic role, responsible for the advanced operation, optimization, and innovation ...

Genezen

Automation Engineer I/II/III

Lexington, MA

JOB SUMMARY Genezen is hiring for an Automation Engineer in our Lexington, MA office. The position will be hired as an Engineer I, II or III dependent on experience level of the successful candidate.

Daikin

Mechanical Automation Engineer 3

Waller, TX

The Mechanical Automation Engineering 3 position is part of the Production Engineering group that supports all areas of production and assembly in the factory. This includes sheet metal stamping ...

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Automation Engineer III information

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$37K

$107.1K

$163K

How much do automation engineer iii jobs pay per year?

As of Aug 30, 2026, the average yearly pay for automation engineer iii in the United States is $107,126.00, according to ZipRecruiter salary data. Most workers in this role earn between $86,500.00 and $123,500.00 per year, depending on experience, location, and employer.

What is an Automation Engineer III?

Automation Engineer III positions are advanced-level engineering roles focused on designing, developing, and maintaining automated systems and processes within industries such as manufacturing, technology, or energy. These professionals work on optimizing production efficiency, integrating new automation technologies, troubleshooting complex systems, and sometimes leading projects or mentoring junior engineers. The 'III' designation typically indicates a higher level of experience or responsibility compared to entry-level or mid-level automation engineers, often requiring several years of relevant work experience and proficiency with automation tools and programming languages.

What are some typical challenges an Automation Engineer III faces when integrating new automation systems into existing workflows?

Automation Engineer III professionals often encounter challenges such as ensuring compatibility between new automation technologies and legacy systems, minimizing downtime during implementation, and managing change across cross-functional teams. Balancing the need for innovation with regulatory compliance and safety standards is also a common concern. Strong communication and project management skills are essential, as the role frequently involves coordinating with operations, IT, and maintenance teams to ensure smooth transitions.

What are the key skills and qualifications needed to thrive as an Automation Engineer III, and why are they important?

To thrive as an Automation Engineer III, you need advanced knowledge of automation systems, control theory, and engineering principles, typically backed by a bachelor's degree in engineering or a related field. Experience with PLC programming, SCADA systems, robotics, and relevant certifications (such as ISA or Siemens) are commonly required. Strong problem-solving skills, attention to detail, and effective communication set standout professionals apart in this role. These skills ensure the design, implementation, and maintenance of reliable automation solutions that optimize processes and support organizational goals.
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Automation Engineer III jobs near you
Infographic showing various Automation Engineer Iii job openings in the United States as of August 2026, with employment types broken down into 94% Full Time, 2% Part Time, and 4% Contract. Highlights an 85% Physical, 5% Hybrid, and 10% Remote job distribution, with an average salary of $107,126 per year, or $51.5 per hour.

Automation Engineer III

AccuScan Sciences

Milpitas, CA

Full-time

Re-posted 3 days ago

Job description

As an Automation Engineer III at AccuScan Sciences you will assume a strategic role, responsible for the advanced operation, optimization, and innovation of automated workflows for nucleic acid extractions, NGS, and molecular assays. The Automation Engineer III will lead strategic planning and execution of automated processes, working closely with Labs to ensure alignment with organizational goals and needs.

KEY RESPONSIBILITES 

  • Leads strategic planning and execution of automated processes, working closely with Labs to ensure alignment with organizational goals and needs. 
  • Exhibits expert-level proficiency in operating and optimizing Automation platforms like Tecan, Beckman, PerkinElmer, constantly researching and integrating cutting-edge technologies. 
  • Designs, develops, and implements sophisticated liquid handling strategies, collaborating with cross-functional teams to streamline operations. 
  • Leads software configuration and programming efforts, introducing advanced automation methods to enhance efficiency and precision. 
  • Takes primary responsibility for troubleshooting complex hardware/software issues during live runs, providing advanced technical solutions and guidance. 
  • Ensures comprehensive and up-to-date education on automation equipment and processes. 
  • Drives innovation by initiating and managing continuous improvement projects, employing advanced problem-solving skills and technical expertise. 
  • Develops and maintains high-level documentation, including advanced SOPs, protocols, and user guides, ensuring accuracy and adherence to regulatory standards. 
  • Provides expert-level guidance on automation-related matters, serving as the go-to resource for complex technical issues and decision-making. 
  • Takes the lead in implementing new liquid handling methods, managing changes effectively and ensuring seamless integration and documentation. 
  • Oversees a culture of Continuous Improvement, encouraging a dynamic environment focused on innovative solutions and best practices. 
  • Engages in specialized projects and initiatives aimed at pushing the boundaries of automation capabilities within the organization. 

Requirements

Required 

  • Education: Bachelor's degree in Engineering, Molecular Biology, Biotechnology, Biochemistry, or a related field. 
  • Experience: Minimum of 8 years of relevant experience.

COMPETENCIES 

  • Extensive experience in a biotechnology environment, showcasing mastery in troubleshooting liquid handling equipment and leading automation projects, especially with Tecan, Beckman, PerkinElmer systems. 
  • Proven track record in method development on automation platforms and driving process improvements. 
  • Exceptional leadership, problem-solving, and communication skills, with the ability to guide and inspire a team effectively. 
  • Advanced proficiency in Microsoft Excel for complex data analysis and manipulation. 
  • In-depth knowledge of precision, accuracy, and Six-Sigma methodologies. 

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