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Application Integration Manager Jobs (NOW HIRING)

RKL a dynamic

Application Integration Specialist

York, PA · On-site

$75K - $85K/yr

The Application Integration Specialist manages desktop and web-based application software solutions typically purchased from third party vendors with a strong understanding of network protocols and ...

RKL

Application Integration Specialist

Lancaster, PA · On-site

$75K - $85K/yr

The Application Integration Specialist manages desktop and web-based application software solutions typically purchased from third party vendors with a strong understanding of network protocols and ...

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How much do application integration manager jobs pay per year?

As of Jul 11, 2026, the average yearly pay for application integration manager in the United States is $111,122.00, according to ZipRecruiter salary data. Most workers in this role earn between $80,000.00 and $132,500.00 per year, depending on experience, location, and employer.

What does an Application Integration Manager do?

An Application Integration Manager oversees the process of connecting different software applications within an organization to ensure they work together seamlessly. This role involves managing integration projects, coordinating with various IT teams, and resolving any issues related to data flow or system compatibility. They are responsible for selecting integration tools, designing integration strategies, and ensuring that all applications communicate effectively to support business operations. Additionally, they monitor performance and troubleshoot integration problems to maintain system efficiency.

What are the key skills and qualifications needed to thrive as an Application Integration Manager, and why are they important?

To thrive as an Application Integration Manager, you need a strong background in software integration, project management, and enterprise architecture, often supported by a degree in computer science or IT-related fields. Familiarity with integration platforms (like MuleSoft, Dell Boomi, or IBM Integration Bus), APIs, and certifications such as TOGAF or PMP are commonly required. Excellent communication, leadership, and problem-solving skills help coordinate cross-functional teams and manage stakeholder expectations. These competencies are vital for ensuring seamless system interoperability, minimizing downtime, and delivering complex integration projects on time and within budget.

What are some common challenges faced by an Application Integration Manager when coordinating between different software teams?

One of the main challenges for an Application Integration Manager is ensuring effective communication and collaboration between diverse software teams, each of which may use different technologies, processes, and priorities. Aligning timelines, managing dependencies, and resolving compatibility issues are frequent hurdles. Successful managers typically establish clear integration protocols, facilitate regular cross-team meetings, and proactively address roadblocks to keep projects on track and ensure seamless data flow between systems.
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Application Integration Manager jobs near you
Infographic showing various Application Integration Manager job openings in the United States as of July 2026, with employment types broken down into 75% Full Time, 20% Part Time, 1% Temporary, and 4% Contract. Highlights an 92% Physical, 2% Hybrid, and 6% Remote job distribution, with an average salary of $111,122 per year, or $53.4 per hour.
Application Integration Manager

Application Integration Manager

Thermo Fisher Scientific

Carlsbad, CA

$113K - $150K/yr

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 10 days ago

Thermo Fisher Scientific rating

7.7

Company rating: 7.7 out of 10

Based on 411 frontline employees who took The Breakroom Quiz

193rd of 527 rated manufacturers

Job description

Work Schedule

Standard (Mon-Fri)

Environmental Conditions

Office

Job Description

You will lead complex FSD application and site-level migrations during the integration of purification and filtration businesses into the Thermo Fisher Scientific IT ecosystem, ensuring seamless transitions and business continuity.

What you will do:

  • Lead and manage the application migration kanban, coordinating complex FSD integrations across multiple workstreams
  • Apply Agile methodologies and frameworks to drive project execution, scope management, schedules, budgets, and resources
  • Leverage deep IT landscape knowledge to design and implement scalable migration strategies and support models
  • Foster continuous improvement and innovation by applying PPI principles throughout migration activities
  • Collaborate cross-functionally with business stakeholders, technical teams, and vendors to deliver strategic technology solutions
  • Build and maintain strong relationships across organizational levels to ensure successful project delivery
  • Ensure compliance with quality standards and regulatory requirements throughout all project phases
  • Develop repeatable models that drive business continuity, process efficiency, and sustainable application support
REQUIREMENTS
  • Advanced degree plus 6 years of experience, or Bachelor's degree plus 8 years of IT project management experience, including large-scale enterprise implementations
  • Preferred Fields of Study: Computer Science, Information Systems, Business Administration, Engineering, or related field
  • Project Management Professional (PMP) certification required or preferred
  • Agile/Scrum certifications (SAFe, CSM, etc.) preferred
  • Strong expertise in project management methodologies including Agile, Scrum, SAFe, and Waterfall
  • Experience with project/portfolio management tools (MS Project, Planview, Jira, etc.)
  • Demonstrated success managing complex technical projects in regulated environments (GxP, SOX, HIPAA, etc.)
  • Excellent financial acumen and budget management capabilities
  • Demonstrated ability to guide and collaborate across multiple teams and organizational levels
  • Experience managing distributed teams and external vendors
  • Excellent communication and presentation skills, both written and verbal
  • Proficiency with MS Office suite and project management software
  • Strong analytical and problem-solving abilities
  • Knowledge of change management principles and methodologies
  • Experience with enterprise systems like ERP, CRM, LIMS preferred
  • Travel may be required up to 20%
  • Life sciences or pharmaceutical industry experience preferred
  • Demonstrated success in project delivery within scope, timeline and budget constraints
  • Excellent risk management and issue resolution skills

Compensation and Benefits

The salary range estimated for this position based in California is $113,500.00–$150,000.00.

This position may also be eligible to receive a variable annual bonus based on company, team, and/or individual performance results in accordance with company policy. We offer a comprehensive Total Rewards package that our U.S. colleagues and their families can count on, which includes:

  • A choice of national medical and dental plans, and a national vision plan, including health incentive programs

  • Employee assistance and family support programs, including commuter benefits and tuition reimbursement

  • At least 120 hours paid time off (PTO), 10 paid holidays annually, paid parental leave (3 weeks for bonding and 8 weeks for caregiver leave), accident and life insurance, and short- and long-term disability in accordance with company policy

  • Retirement and savings programs, such as our competitive 401(k) U.S. retirement savings plan

  • Employees’ Stock Purchase Plan (ESPP) offers eligible colleagues the opportunity to purchase company stock at a discount

For more information on our benefits, please visit: https://jobs.thermofisher.com/global/en/total-rewards

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