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Temporary Bioinformatics Software Engineer Jobs in California

Probably Genetic

Senior Software Engineer

San Francisco, CA · On-site

$150K - $210K/yr

About the Role We are looking for a Senior Software Engineer who will contribute to the design and ... Create APIs, laboratory integrations, bioinformatic tooling, and ML infrastructure using Python ...

BillionToOne

Quality Engineer, Prenatal

Union City, CA · On-site

$82K - $105K/yr

Lab Operations, Bioinformatics, Process Engineering, Software Engineering, R&D). You will lead the analysis of data to identify improvement initiatives and will execute those process improvements ...

GATC Health

Bioinformatics Analyst - CA

Irvine, CA · On-site

... software development methods and tools in a team environment. • Experience in programming in ... and bioinformatics innovation. Company : GATC Health uses AI to speed drug discovery, predict ...

Mithrl

Bioinformatics Engineer, Pipelines

San Francisco, CA · On-site

$150K - $200K/yr

ABOUT THE ROLE We are looking for a Lead Bioinformatics Pipeline Engineer to build and scale Mithrl ... Previous work in a tech bio startup, biotech R&D group, or scientific software company WHAT YOU ...

Mithrl

Bioinformatics Engineer, Pipelines

San Francisco, CA · On-site

$150K - $200K/yr

ABOUT THE ROLE We are looking for a Lead Bioinformatics Pipeline Engineer to build and scale Mithrl ... Previous work in a tech bio startup, biotech R&D group, or scientific software company WHAT YOU ...

GATC Health

Bioinformatics Analyst - CA

Irvine, CA · On-site

$70K - $85K/yr

... software development methods and tools in a team environment. * Experience in programming in ... Computational biology and bioinformatics innovation. Why Join Us: * Opportunity to work at the ...

GATC Health

Bioinformatics Analyst - CA

Irvine, CA · On-site

$70K - $85K/yr

... software development methods and tools in a team environment. * Experience in programming in ... Computational biology and bioinformatics innovation. $70,000 - $85,000 a year Why Join Us: • ...

Natera

Senior Bioinformatics Scientist

San Carlos, CA · On-site

$130K - $163K/yr

Natera is seeking a Senior Bioinformatics Scientist to join our Bioinformatics team dedicated to ... business professionals, software engineers and many other professionals from world-class ...

Natera

Principal Software Engineer

South San Francisco, CA · Remote

$162K - $217K/yr

Principal Software Engineer Location: South San Francisco, CA preferred; Remote optional Job Type ... or bioinformatics computing, LIMS or laboratory data systems, workflow orchestration engines ...

Natera

Principal Software Engineer

South San Francisco, CA · On-site

$162K - $217K/yr

Principal Software Engineer Location: South San Francisco, CA preferred; Remote optional Job Type ... or bioinformatics computing, LIMS or laboratory data systems, workflow orchestration engines ...

TEKsystems

Software Engineer

Redondo Beach, CA

$45 - $75/hr

The Software Engineer will develop software which will operate in a resource constrained target ... If eligible, the benefits available for this temporary role may include the following: • Medical ...

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All JobsBioinformatics Software Engineer JobsTemporary Bioinformatics Software Engineer JobsTemporary Bioinformatics Software Engineer Jobs in California

Temporary Bioinformatics Software Engineer information

What is the difference between Temporary Bioinformatics Software Engineer vs Bioinformatics Data Analyst?

AspectTemporary Bioinformatics Software EngineerBioinformatics Data Analyst
CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fieldBachelor's or Master's in Bioinformatics, Biology, or related field
Work EnvironmentProject-based, software development teams, research labsData interpretation, reporting, research teams
Industry UsageBiotech, pharma, research institutionsHealthcare, research, biotech

Temporary Bioinformatics Software Engineers focus on developing and maintaining bioinformatics tools and pipelines, often working in software development environments. Bioinformatics Data Analysts primarily interpret and analyze biological data, providing insights for research or clinical decisions. While both roles require bioinformatics knowledge, their core responsibilities and work settings differ.

What types of projects and collaborations can a temporary bioinformatics software engineer expect to be involved in?

As a Temporary Bioinformatics Software Engineer, you will typically work on short-term projects such as developing or maintaining data analysis pipelines, optimizing algorithms for genomic data processing, or integrating software tools with laboratory information management systems. Collaboration is frequent with research scientists, data analysts, and other engineers, often through agile project teams or cross-functional meetings. The fast-paced nature of temporary roles means you’ll need to quickly adapt to new codebases, contribute to ongoing research, and communicate technical findings effectively. This can be a great opportunity to build specialized skills, expand your professional network, and gain exposure to the latest advancements in bioinformatics.

What are the key skills and qualifications needed to thrive as a temporary bioinformatics software engineer, and why are they important?

To thrive as a Temporary Bioinformatics Software Engineer, you need a solid background in computer science, biology, and programming languages such as Python, R, or Java, often with a degree in bioinformatics or a related field. Familiarity with bioinformatics tools, databases (e.g., BLAST, Ensembl), and experience using version control systems like Git are typically required. Strong analytical thinking, adaptability, and effective communication are crucial for collaborating with multidisciplinary teams and handling changing project needs. These skills enable efficient development and maintenance of software solutions that support complex biological data analysis in a fast-paced, project-driven environment.

What does a temporary bioinformatics software engineer do?

A Temporary Bioinformatics Software Engineer develops and maintains software tools and applications used in biological and genomic research, typically for a specific short-term project or to cover a staffing gap. They collaborate with scientists to analyze data, automate workflows, and ensure the accuracy of computational methods. Their work often involves writing code, managing databases, and troubleshooting technical issues related to the processing of biological data. Temporary roles usually focus on delivering specific features or supporting research within a defined timeframe.
What are the most commonly searched types of Bioinformatics Software Engineer jobs in California? The most popular types of Bioinformatics Software Engineer jobs in California are:
What cities in California are hiring for Temporary Bioinformatics Software Engineer jobs? Cities in California with the most Temporary Bioinformatics Software Engineer job openings:
Temporary Bioinformatics Software Engineer jobs near you

Lead Bioinformatics Scientist, NGS

Profluent

Emeryville, CA • On-site, Remote

$160K - $230K/yr

Full-time

Medical, Dental, Vision, Retirement, PTO

Re-posted 24 days ago

Job description

Profluent is the frontier AI lab for biology. Profluent builds powerful foundation models for all of life's molecules, unlocking solutions that transform medicine, agriculture, and beyond. Founded in 2022 and headquartered in Emeryville, CA, Profluent is backed by leading investors including Altimeter Capital, Bezos Expeditions, Spark Capital, Insight Partners, Air Street Capital, AIX Ventures, and Convergent Ventures and has raised over $150M to date.
We're seeking an experienced computational scientist to lead the design, development, and operation of the NGS analysis platform that powers Profluent's gene editing and protein design programs. You'll work at the intersection of computational biology, software engineering, and experimental biology to build scalable systems that extract clear, actionable insights from large-scale sequencing data.
In this role, you'll architect core bioinformatics infrastructure, define analytical strategy, and collaborate closely with experimental and ML teams to accelerate design-build-test-learn cycles. You'll also mentor team members, promote software engineering best practices, and help shape the future of Profluent's computational biology capabilities.
Responsibilities
  • Lead design and implementation of scalable NGS analysis pipelines supporting gene editing and protein engineering workflows
  • Develop clear, intuitive visualizations and reports to communicate sequencing results and biological insights
  • Manage cloud-based compute environments and data systems for large-scale datasets
  • Partner with biology teams to analyze results, troubleshoot, and optimize experimental design
  • Collaborate with machine learning teams to curate data for model training
  • Establish best practices for code review, testing, and CI/CD in computational workflows
  • Mentor junior scientists and foster a culture of rigor, reproducibility, and innovation

Qualifications
  • PhD or MS in Bioinformatics, Computational Biology, Computer Science, or a related quantitative field
  • 5+ years of experience analyzing NGS datasets (e.g., amplicon sequencing, high-throughput editing, or screening experiments)
  • Strong programming skills in Python (pandas, numpy, biopython, etc.)
  • Expertise with workflow orchestration tools (Nextflow, Snakemake) and cloud environments (GCP, AWS)
  • Experience with containerization (Docker, Kubernetes) and scalable compute infrastructure
  • Deep understanding of Linux, git-based version control, and software engineering best practices
  • Proven ability to transform complex sequencing data into actionable biological insights

Preferences
  • Experience with gene editing technologies (CRISPR, base or prime editing; strongly preferred)
  • Familiarity with SQL and data modeling for biological or experimental data
  • Experience with LIMS platforms (e.g., Benchling) and lab data integration
  • Track record of developing production-quality scientific software or open-source bioinformatics tools

What We Offer
  • High-growth opportunity with meaningful impact on the future of protein design
  • Competitive compensation package with equity participation
  • 401(k) with a strong employer match
  • Comprehensive benefits including health/dental/vision insurance
  • Generous PTO policy and commitment to work-life balance
  • Professional development opportunities in a cutting-edge field at the intersection of AI and biology

Profluent Bio, Inc is an equal opportunity employer promoting diversity and inclusion in the workspace. We do not discriminate on the basis of race, color, religion, marital status, age, national origin, ancestry, physical or mental disability, medical conditions, veteran status, sexual orientation, gender (including gender identity and gender expression), sex (which includes pregnancy, childbirth, and breastfeeding), genetic information, taking or requesting statutorily protected leave, or any other basis protected by law.
Work Authorization Requirement
Applicants must have ongoing work authorization in the United States that does not require employer sponsorship. Sponsorship will not be provided now or at any time in the future for this position.
Employment Eligibility Verification
Legal authorization to work in the United States is required. In compliance with federal law, all persons hired must verify their identity and work eligibility and complete the required employment verification form upon hire.
Hiring Salary Range
$160,000-$230,000 USD

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