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Systems Engineer Jobs in Rochester, NY (NOW HIRING)

Join our mission as a Staff Systems Engineer supporting R&D Automation and Middleware. In this role, you will provide technical systems leadership to deliver new or significantly enhanced products ...

EHS Systems Engineer

Rochester, NY

$72K - $94K/yr

The EHS Systems Engineer is responsible for designing, maintaining, and continuously improving fairlife's Environmental and Occupational Health & Safety (EHS) Management System applications in ...

Senior Process & Systems Engineer

Fairport, NY · On-site

$98K - $127K/yr

The role combines deep process engineering expertise with systems integration thinking, aligning process design, equipment qualification, controls, quality systems, and manufacturing operations to ...

IT Systems Engineer

Rochester, NY · On-site

$75K - $85K/yr

... system configurations, procedures, and operational standards. • Collaborate with application teams, network engineers, and security teams to ensure reliable service delivery. Preferred ...

IT Systems Engineer

Rochester, NY · On-site

$75K - $85K/yr

Document system configurations, procedures, and operational standards. Collaborate with application teams, network engineers, and security teams to ensure reliable service delivery. Preferred ...

Power System Engineer Location : NY- Rochester, NY -Binghamton, CT - Orange, ME- Augusta, ME- Portland Work type : Office Avangrid, a leading U.S. energy company with more than 3.4 million electric ...

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Systems Engineer information

See Rochester, NY salary details

$52.8K

$125.6K

$164.8K

How much do systems engineer jobs pay per year?

As of Jul 12, 2026, the average yearly pay for systems engineer in Rochester, NY is $125,576.00, according to ZipRecruiter salary data. Most workers in this role earn between $96,700.00 and $155,000.00 per year, depending on experience, location, and employer.

Will AI replace system engineers?

System engineers design, implement, and maintain complex IT systems, and while AI can automate certain tasks like monitoring and troubleshooting, it is unlikely to fully replace the role. Human expertise is essential for system architecture, decision-making, and adapting to new technologies, making system engineers valuable for overseeing AI tools and ensuring system security and reliability.

What exactly does a systems engineer do?

A systems engineer designs, develops, and manages complex IT systems and infrastructure, ensuring they operate efficiently and securely. They analyze requirements, integrate hardware and software components, and often use tools like network protocols and scripting languages to troubleshoot and optimize systems. Certification and strong problem-solving skills are important in this role.

What are systems engineers?

Systems engineers are professionals who design, integrate, and manage complex systems throughout their life cycles. They work across various industries, ensuring that all aspects of a project or system—hardware, software, processes, and people—work together efficiently and effectively. Systems engineers coordinate between different engineering teams, address technical and organizational challenges, and ensure requirements are met. Their role often involves both big-picture thinking and attention to detail to deliver reliable and scalable solutions.

What engineers make $200,000 a year?

Senior systems engineers, software engineers, and network engineers with extensive experience, specialized skills, and advanced certifications can earn $200,000 or more annually. High-paying roles often require expertise in cloud computing, cybersecurity, or engineering management, along with a strong track record of project success and leadership.

What Do Systems Engineers Do?

The role of a systems engineer varies based on the company they work for, but in every industry systems engineers use computerized systems to keep track of all the moving parts within their organizations. The term systems engineer usually refers to a computer systems engineer, which combines several disciplines to create, purchase, and install a computer system that suits the needs of each particular client. They will also work in a hands-on manner during the installation, acquisition, testing, and implementation phases of the project. Duties typically include making recommendations for scalability, troubleshooting any problems that arise during the use of the system, reviewing a company’s security requirements, and recommending security measures to allow the company to avoid compromising any sensitive data.

What is the difference between Systems Engineer vs Network Engineer?

AspectSystems EngineerNetwork Engineer
CertificationsCompTIA Network+, Cisco CCNA, Microsoft certificationsCompTIA Network+, Cisco CCNA, Juniper JNCIA
Work EnvironmentDesigning, implementing, and managing IT systems and infrastructureDesigning, configuring, and maintaining network hardware and connectivity
Industry UsageIT, technology, enterprise solutionsTelecommunications, IT, networking service providers
Common TasksSystem integration, troubleshooting, server managementNetwork setup, routing, switching, security

While both roles involve technical expertise in IT infrastructure, Systems Engineers focus on overall system architecture and integration, whereas Network Engineers specialize in network hardware, connectivity, and security. Understanding these differences helps employers and professionals align skills with job requirements.

What are the key skills and qualifications needed to thrive as a Systems Engineer, and why are they important?

To thrive as a Systems Engineer, you need a strong background in systems architecture, troubleshooting, and integration, typically supported by a degree in computer science or engineering. Familiarity with operating systems (like Linux and Windows), virtualization platforms, scripting languages, and certifications such as CompTIA, Cisco (CCNA), or Microsoft (MCSA) are commonly required. Strong problem-solving abilities, effective communication, and teamwork make candidates stand out in this role. These skills and qualifications ensure the design, implementation, and maintenance of reliable, scalable systems critical for organizational operations.

How does a Systems Engineer typically collaborate with cross-functional teams during a project lifecycle?

Systems Engineers often serve as a bridge between various technical and non-technical teams, including software developers, network specialists, project managers, and end users. Throughout a project, they participate in requirements gathering, design reviews, and integration testing, ensuring that each component fits seamlessly within the overall system. Effective communication and documentation are crucial, as Systems Engineers must translate complex technical concepts into actionable tasks for diverse stakeholders. This collaborative approach not only streamlines problem-solving but also helps deliver robust, scalable solutions.

What engineers make $500,000?

Senior systems engineers with extensive experience, advanced certifications, and expertise in areas like cloud computing, cybersecurity, or network architecture can reach salaries of $500,000 or more, especially in high-demand industries or leadership roles. Such compensation often includes bonuses, stock options, or other incentives.
What are the most commonly searched types of Systems Engineer jobs in Rochester, NY? The most popular types of Systems Engineer jobs in Rochester, NY are:
What are popular job titles related to Systems Engineer jobs in Rochester, NY? For Systems Engineer jobs in Rochester, NY, the most frequently searched job titles are:
What job categories do people searching Systems Engineer jobs in Rochester, NY look for? The top searched job categories for Systems Engineer jobs in Rochester, NY are:
What cities near Rochester, NY are hiring for Systems Engineer jobs? Cities near Rochester, NY with the most Systems Engineer job openings:
Infographic showing various Systems Engineer job openings in Rochester, NY as of July 2026, with employment types broken down into 100% Full Time. Highlights an 100% In-person job distribution, with an average salary of $125,576 per year, or $60.4 per hour.
Staff Systems Engineer

Staff Systems Engineer

QuidelOrtho

Rochester, NY • On-site

Other

Medical, Dental, Vision, Life, Retirement, PTO

Re-posted 8 days ago


QuidelOrtho rating

7.6

Company rating: 7.6 out of 10

Based on 43 frontline employees who took The Breakroom Quiz

227th of 527 rated manufacturers


Job description

The Opportunity

QuidelOrtho unites the strengths of Quidel Corporation and Ortho Clinical Diagnostics, creating a world-leading in vitro diagnostics company with award-winning expertise in immunoassay and molecular testing, clinical chemistry and transfusion medicine. We are more than 6,000 strong and do business in over 130 countries, providing answers with fast, accurate and consistent testing where and when they are needed most - home to hospital, lab to clinic.

Our culture puts our team members first and prioritizes actions that support happiness, inspiration and engagement. We strive to build meaningful connections with each other as we believe that employee happiness and business success are linked. Join us in our mission to transform the power of diagnostics into a healthier future for all.

The Role

At QuidelOrtho, we're advancing the power of diagnostics for a healthier future for all. Join our mission as a Staff Systems Engineer supporting R&D Automation and Middleware. In this role, you will provide technical systems leadership to deliver new or significantly enhanced products and features across our portfolio, partnering closely with internal teams and external collaborators.

The individual should have an eye for leading the creation of custom engineering solutions and be well-versed in each stage of the R&D systems life cycle while driving results within the project constraints of schedule, cost, performance, quality and reliability objectives.

This position will be onsite full-time in Rochester, NY and will require the ability to travel up to 10% to western Europe, China and Japan.

The Responsibilities

  • Single point of contact for function to the project team and is responsible for planning and execution control for R&D deliverables. Responsible for resource commitments to project leadership, and holding functional leaders accountable to resource commitments.
  • Conceives plans, and implements solutions to technical problems new designs, equipment and process development
  • Establishes R&D milestones and monitors adherence to master plans and schedules. Identifies program challenges/risks and obtains solutions to allocation of resources or changing specifications. Delivers critical, timely communications to the business (Head of R&D, and Project Leader) on project execution. Identifies critical dependences, risks and contingency plans. Proactively monitors progress, anticipating the effect of dependencies on schedule, cost, etc.
  • Applies extensive technical expertise within one of the following engineering disciplines, and has a working awareness of other related disciplines: Laboratory Automation, Robotics, Informatics, Software, middleware applications, Laboratory Information Systems, Serial and network Communications, Artificial Intelligence and understands the inter-relationship of multiple disciplines
  • Ensures the accurate recording of data, according to defined engineering practices and policies, for the making of decisions as
  • Provides solutions to various technical problems of both a specific and complex nature
  • Contributes to output that improve development cycle time, ensure the quality of data analysis, and further the achievement of specific project goals related to critical company objectives
  • Acts independently, without day-to-day direction, on execution of assigned activities.
  • Establishes and maintains partner relations at the technical level
  • Perform other work-related duties as assigned

The Individual

Required:

  • This position is not currently eligible for visa sponsorship
  • Bachelor's degree in engineering, physics, math, applied sciences or related field.
  • Typically requires 10+ years of experience with BS or equivalent work experience, or 7+ years with MS
  • Experience with Laboratory Automation systems and Clinical-Chemistry/Immuno-Assay analyzers
  • Experience with Middleware Applications or similar Software
  • Experience with product development tools, Office tools (Word, Excel, PowerPoint, Visio, etc.)
  • Demonstrated commitment to quality work
  • Exceptional oral and written communication and presentation skills required including communication with business partners
  • Ability to work within a team
  • Strong analytical capabilities, including quantitative and qualitative assessment skills, insight generation and critical thinking skills.
  • Self-initiator, results driven and action & detail oriented
  • Curiosity
  • Travel 10% (including Western Europe and potentially China/Japan)

Preferred:

  • Experience with Artificial Intelligence, Genetic algorithms, Large Language Models
  • Software programming, e.g. Python

The Key Working Relationships

Internal Partners:

  • Works cross-functionally: Marketing, Design Quality, Regulatory, Clinical Affairs, IT, Global Service Organization, Technical Publication, Supply Chian, Operations and Project Management

External Partners:

  • Various Automation and Middleware partners in accordance with Business Unit strategy
  • Provides Statement of Work, Acceptance Criteria, Requirements, input to risk management, test plans and procedures as required
  • Participate in product and design reviews, as required

The Work Environment

No strenuous physical activity, though occasional light lifting of files and related materials is required. 30% of time in meetings, working with team, or talking on the phone, 70% of the time at the desk on computer, doing analytical work. Travel requied. Travel includes airplane, automobile travel and overnight hotel. Frequent work in a BL-2 Lab environment will require wearing of approved and provided clothing and eye protection.

Physical Demands

Most of the work is to be performed in an office-type open space environment using laptop computers and accessories (sitting or standing). Occasional lifting/carrying of computers and accessories or similar items.

Salary Transparency

The salary range for this position takes into account a wide range of factors including education, experience, knowledge, skills, geography, and abilities of the candidate, in addition to internal equity and alignment with market data. At QuidelOrtho, it is not typical for an individual to be hired at or near the top range for their role and compensation decisions are dependent on the facts and circumstances of each case. The salary range for this position is $100,000 to $130,000 and is bonus eligible. QuidelOrtho offers a comprehensive benefits package including medical, dental, vision, life, and disability insurance, along with a 401(k) plan, employee assistance program, Employee Stock Purchase Plan, paid time off (including sick time), and paid Holidays. All benefits are non-contractual, and QuidelOrtho may amend, terminate, or enhance the benefits provided, as it deems appropriate.

Equal Opportunity

QuidelOrtho believes in Equal Opportunity for all and is committed to ensuring all individuals, including individuals with disabilities, have an opportunity to apply for those positions that they are interested in and qualify for without regard to race, religion, color, national origin, citizenship, sex, sexual orientation, gender identity, age, veteran status, disability, genetic information, or any other protected characteristic. QuidelOrtho is also committed to providing reasonable accommodations to qualified individuals so that an individual can perform the duties. If you are interested in applying for an employment opportunity and require special assistance or an accommodation to apply due to a disability, please contact us at recruiting@quidelortho.com.



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