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Senior Bioinformatics Software Engineer Jobs in Boston, MA

Senior Software Engineer

Boston, MA

$133K - $175K/yr

The Senior Software Engineer role focuses on developing secure new applications and functionality, enhancing and supporting existing applications, providing system redundancy, and collaborating ...

Senior Software Engineer -- Boston, MA area A well-established consumer media and technology company is hiring a Senior Software Engineer for its Engineering team. This is a senior, high-impact seat ...

Senior Software Engineer

Boston, MA · On-site

$150K - $170K/yr

Senior Software Engineer -- Boston, MA area A well-established consumer media and technology company is hiring a Senior Software Engineer for its Engineering team. This is a senior, high-impact seat ...

The Senior Software Engineer role focuses on developing secure new applications and functionality, enhancing and supporting existing applications, providing system redundancy, and collaborating ...

Senior Software Engineer

Boston, MA · On-site

$130 - $180/hr

We are hiring for four (4) Senior Software Engineer positions through this single posting. All four roles share the core requirements below. Who We Are EdgeBeam is the world's first Hybrid Network ...

What You'll Do As a Senior Software Engineer, you'll play a key role in designing and developing software that supports and enhances our advanced motion control products. * Design, develop, test, and ...

What You'll Do As a Senior Software Engineer, you'll play a key role in designing and developing software that supports and enhances our advanced motion control products. * Design, develop, test, and ...

Senior Software Engineer

Canton, MA · On-site

$120K - $156K/yr

What You'll Do As a Senior Software Engineer, you'll play a key role in designing and developing software that supports and enhances our advanced motion control products. * Design, develop, test, and ...

Senior Software Engineer

Boston, MA · On-site

$133K - $175K/yr

In this Senior Software Engineer role, you will design, build, and deploy AI Agentic systems to process and enrich intelligence data, while mentoring junior engineers and driving engineering ...

Senior Software Engineer

Boston, MA · Hybrid

$133K - $175K/yr

Description We are hiring a Senior Software Engineer with deep expertise in AI/ML engineering and data-intensive systems to join our Catastrophic and Risk Solutions team. You will be a key technical ...

Senior Software Engineer

Waltham, MA · Hybrid

$132K - $174K/yr

Xometry is seeking a Senior Software Engineer to join our software engineering organization. In this role, you'll work as part of a skilled, collaborative team to build and maintain solutions for the ...

Senior Software Engineer

Canton, MA · On-site

$129K - $170K/yr

Analogic is pushing the boundaries of motion control technology, and they are seeking a Senior Software Engineer who is excited to build reliable, scalable systems that impact real-world products.

Senior Software Engineer

Boston, MA

$133K - $175K/yr

Senior Software Engineer TEAM: Portfolio Implementation Technology LOCATION: Needham or Boston ..... At Wellington Management, technology is central to how we invest. Our Portfolio Implementation ...

Showing results 41-60

Senior Bioinformatics Software Engineer information

See Boston, MA salary details

$91.8K

$111.1K

$129.8K

How much do senior bioinformatics software engineer jobs pay per year?

As of Aug 10, 2026, the average yearly pay for senior bioinformatics software engineer in Boston, MA is $111,107.00, according to ZipRecruiter salary data. Most workers in this role earn between $102,700.00 and $119,500.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a senior bioinformatics software engineer?

To thrive as a Senior Bioinformatics Software Engineer, you need a strong background in computer science, biology, and data analysis, often supported by an advanced degree in bioinformatics or a related field. Expertise with programming languages (such as Python, R, or Java), cloud computing, bioinformatics tools, and version control systems is typically required, along with experience using databases and relevant software frameworks. Strong problem-solving skills, collaboration, and effective communication are crucial soft skills for working with multidisciplinary teams and presenting complex data. These combined skills enable the effective development and maintenance of robust software tools that support cutting-edge biological research and data-driven discoveries.

How does a senior bioinformatics software engineer typically collaborate with cross-functional teams in a research or clinical setting?

Senior Bioinformatics Software Engineers frequently work alongside biologists, data scientists, and clinicians to develop and maintain computational pipelines for data analysis. They play a key role in translating complex biological questions into scalable software solutions, often leading code reviews, mentoring junior developers, and ensuring data integrity. Regular meetings and clear communication are vital, as the role requires aligning technical development with scientific goals and regulatory requirements. This collaborative environment offers opportunities to influence project direction and contribute to impactful discoveries.

What does a senior bioinformatics software engineer do?

A Senior Bioinformatics Software Engineer designs, develops, and maintains software tools and pipelines to analyze biological data, such as genomic or proteomic information. They work closely with scientists and researchers to understand data requirements and translate them into efficient, scalable computational solutions. Their responsibilities often include coding, troubleshooting, optimizing algorithms, as well as mentoring junior engineers and contributing to project planning. Senior engineers are expected to have strong programming skills, a solid understanding of bioinformatics concepts, and experience working with large biological datasets.

What is the difference between Senior Bioinformatics Software Engineer vs Bioinformatics Software Engineer?

AspectSenior Bioinformatics Software EngineerBioinformatics Software Engineer
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related field; experience in software development and bioinformatics toolsBachelor's or Master's in Bioinformatics, Computer Science, or related field; less emphasis on extensive experience
Work EnvironmentResearch labs, biotech companies, healthcare institutions, often leading projectsResearch teams, biotech firms, academic settings, supporting bioinformatics analysis
Employer & Industry UsageUsed in biotech, pharma, healthcare, research institutionsCommon in similar industries, often as entry to mid-level roles

The main difference between a Senior Bioinformatics Software Engineer and a Bioinformatics Software Engineer lies in experience and responsibility. Senior roles typically require more advanced skills, leadership, and project management, while entry-level roles focus on supporting bioinformatics analysis and software development. Both roles are vital in biotech and research industries, but senior positions involve greater oversight and strategic input.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in Boston, MA? The most popular types of Bioinformatics Software Engineer jobs in Boston, MA are:
What are popular job titles related to Senior Bioinformatics Software Engineer jobs in Boston, MA? For Senior Bioinformatics Software Engineer jobs in Boston, MA, the most frequently searched job titles are:
What job categories do people searching Senior Bioinformatics Software Engineer jobs in Boston, MA look for? The top searched job categories for Senior Bioinformatics Software Engineer jobs in Boston, MA are:
Infographic showing various Senior Bioinformatics Software Engineer job openings in Boston, MA as of August 2026, with employment types broken down into 67% Full Time, and 33% Contract. Highlights an 67% In-person, and 33% Remote job distribution, with an average salary of $111,107 per year, or $53.4 per hour.

$133K - $175K/yr

Full-time

Medical, Dental, Vision, Retirement, PTO

Re-posted 21 days ago


Harvard University rating

8.5

Company rating: 8.5 out of 10

Based on 12 frontline employees who took The Breakroom Quiz

80th of 617 rated colleges and universities


Job description

Company Description

By working at Harvard University, you join a vibrant community that advances Harvard's world-changing mission in meaningful ways, inspires innovation and collaboration, and builds skills and expertise. We are dedicated to creating a diverse and welcoming environment where everyone can thrive.

Why join Harvard Medical School?

Harvard Medical School's mission is to nurture a diverse, inclusive community dedicated to alleviating suffering and improving health and well-being for all through excellence in teaching and learning, discovery and scholarship, and service and leadership.

You'll be at the heart of biomedical discovery, education, and innovation, working alongside world-renowned faculty and a community dedicated to improving human health. This is more than a job - it's an opportunity to shape the future of medicine.

Job Description

The Senior Software Engineer role focuses on developing secure new applications and functionality, enhancing and supporting existing applications, providing system redundancy, and collaborating closely with AA&D staff and cross-functional teams to deliver innovative, cost-effective, and timely solutions. The Senior Software Engineer is responsible for leading application development efforts and adhering to Software Development Life Cycle (SDLC) best practices. The role performs the full application development lifecycle, including requirements gathering, functional analysis, design, development, unit testing, documentation, implementation, maintenance, and support of applications and reports. Key responsibilities include developing PL/SQL stored procedures, functions, packages, triggers, and supporting database objects. The role may leverage Oracle AOP, Dynamic SQL, ref cursors, bulk collection, explain plans, materialized views, shell scripting, and performance tuning techniques. The position also applies knowledge of object-oriented programming, API development, and API management to build scalable and maintainable solutions. The Senior Software Engineer uses Oracle APEX, JavaScript, jQuery, CSS, and web services to rapidly deliver secure, user-focused web applications and reports. This role employs REST design principles in the development of web services and integrations and works to ensure application usability, security, reliability, and performance. The position is responsible for troubleshooting critical production issues and providing timely resolution. It also provides architectural guidance and leadership on software development best practices, user interface design frameworks, server-side development, integrations, messaging solutions, and related tools and technologies. The role evaluates the Oracle APEX technology roadmap and emerging tools to identify capabilities that would benefit the HMS-AAD platform. In addition, the Senior Software Engineer collaborates with consultants, vendors, and internal technology partners as needed to conduct code reviews, security reviews, integrations, and adoption of best practices. The role serves as a technical liaison to internal and external stakeholders, mentors junior staff, and researches new technologies, tools, and software products to determine their feasibility and alignment with the organization's technology strategy.

Qualifications

Basic Qualifications:

  • Minimum of seven years' post-secondary education or relevant work experience.


Additional Qualifications and Skills:

    Experience designing interactive Oracle APEX applications. 
    Ability to develop software in Java, JavaScript, PL/SQL, or other programming languages. 
    Experience developing web applications using at least one popular web framework. 
    Experience with test-driven development. 
    Proficiency with software engineering tools and development best practices. 
    Ability to document business and technical requirements, specifications, and solutions clearly. 
    Excellent knowledge of relational databases and database-driven applications. 
    Bachelor's degree in Computer Science, Engineering, or a related field preferred. 
    Strong interpersonal, facilitation, and consensus-building skills. 
    Excellent verbal, written, and presentation communication skills. 
    Proven ability to communicate and collaborate effectively with staff at all organizational levels. 
    Experience with higher education fundraising is a plus. 
    Strategic approach to problem-solving and the ability to develop and communicate a sound plan. 
    Strong analytical and quantitative skills, with the ability to connect product design and features to strategic objectives. 
    Experience with both Agile and Lean development methodologies.
Certificates and Licenses:

  • Completion of Harvard IT Academy specified foundational courses (or external equivalent) preferred.
Additional Information
  • Standard Hours/Schedule: 35 hours per week
  • Visa Sponsorship Information: Harvard University is unable to provide visa sponsorship for this position.
  • Pre-Employment Screening: Identity
  • Staying Informed About Your Application: Due to the high volume of applications, we may not always be able to reach out right away, but you can track your status anytime through the Careers@Harvard portal.

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Work Format Details

This position has been determined by school or unit leaders that some of the duties and responsibilities can be effectively performed at a non-Harvard location. The work schedule and location will be set by the department at its discretion and based upon operational needs. When not working at a Harvard or Harvard-designated location, employees in hybrid positions must work in a Harvard registered state in compliance with the University's Policy on Employment Outside of Massachusetts. Additional details will be discussed during the interview process. Certain visa types and funding sources may limit work location. Individuals must meet work location sponsorship requirements prior to employment.

Salary Grade and Ranges

This position is salary grade level 059. Please visit Harvard's Salary Ranges to view the corresponding salary range and related information. 

Benefits

Harvard offers a comprehensive benefits package that is designed to support a healthy work-life balance and your physical, mental and financial wellbeing. Because here, you are what matters. Our benefits include, but are not limited to: 

  • Generous paid time off including parental leave 
  • Medical, dental, and vision health insurance coverage starting on day one 
  • Retirement plans with university contributions 
  • Wellbeing and mental health resources 
  • Support for families and caregivers 
  • Professional development opportunities including tuition assistance and reimbursement 
  • Commuter benefits, discounts and campus perks 

Learn more about these and additional benefits on our Benefits & Wellbeing Page. 

EEO/Non-Discrimination Commitment Statement

Harvard University is committed to equal opportunity and non-discrimination. We seek talent from all parts of society and the world, and we strive to ensure everyone at Harvard thrives. Our differences help our community advance Harvard's academic purposes.

Harvard has an equal employment opportunity policy that outlines our commitment to prohibiting discrimination on the basis of race, ethnicity, color, national origin, sex, sexual orientation, gender identity, veteran status, religion, disability, or any other characteristic protected by law or identified in the university's non-discrimination policy. Harvard's equal employment opportunity policy and non-discrimination policy help all community members participate fully in work and campus life free from harassment and discrimination.


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