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Contract Bioinformatics Engineer Jobs in Boston, MA

Winaxis

Cloud Infrastructure/AI/ML Engineer

Boston, MA · On-site

$116K - $153K/yr

Cloud Infrastructure/AI/ML Engineer (Contract, 12+ months, Hybrid) - Location : Waltham, MA (Hybrid ... Must have strong experience in bioinformatics, including pipeline execution and workflow management ...

ApTask Global Workforce

Software Developer

Boston, MA · On-site

$89.49/hr

This is a 6+ month contract opportunity. The successful candidate will support the development and ... Bachelor's degree in Computer Science, Software Engineering, Bioinformatics, Data Science, or a ...

New

C10 Labs

AI BioHub Fellow

Cambridge, MA · On-site

$53K - $72K/yr

Contract / Temp Location: Cambridge Description About the AI Bio Hub The AI Bio Hub is a venture ... engineering, computational biology, bioinformatics, biomedical engineering, biology, chemistry ...

Addison Group

AI Curation Operator

Boston, MA · On-site

$35/hr

Contract Pay Rate: $35/Hour Benefits: This position is eligible for medical, dental, vision, and ... and engineering teammates to combine domain judgment with sound engineering practice. What you ...

All JobsContract Bioinformatics Engineer JobsContract Bioinformatics Engineer Jobs in Boston, MA

Contract Bioinformatics Engineer information

See Boston, MA salary details

$46.7K

$142.4K

$259.1K

How much do contract bioinformatics engineer jobs pay per year?

As of Aug 6, 2026, the average yearly pay for contract bioinformatics engineer in Boston, MA is $142,376.00, according to ZipRecruiter salary data. Most workers in this role earn between $104,300.00 and $170,600.00 per year, depending on experience, location, and employer.

What is a contract bioinformatics engineer?

Contract Bioinformatics Engineers are professionals who work on a temporary or project basis to analyze biological data using computational tools. They often collaborate with researchers and institutions in fields like genomics, pharmaceuticals, and biotechnology. Their work involves writing code, processing large datasets, and developing algorithms to interpret complex biological information. By working on a contract basis, they provide specialized expertise for specific projects without being permanent employees.

What are the common challenges faced by contract bioinformatics engineers, and how can they be addressed?

Contract Bioinformatics Engineers often face challenges related to rapidly onboarding to new projects, adapting to diverse data pipelines, and working with teams that may use different workflows or tools. To address these challenges, it's important to maintain strong communication with project leads, quickly familiarize yourself with the organization’s data standards, and leverage your experience with a variety of bioinformatics tools and programming languages. Flexibility and the ability to document your work thoroughly will also help ensure smooth collaboration and successful project delivery.

What are the key skills and qualifications needed to thrive as a contract bioinformatics engineer?

To thrive as a Contract Bioinformatics Engineer, you typically need expertise in computational biology, programming (such as Python or R), and a background in life sciences or related fields. Familiarity with bioinformatics tools, next-generation sequencing (NGS) platforms, version control systems, and data analysis software is commonly required. Strong problem-solving abilities, clear communication, and adaptability are crucial soft skills for collaborating with multidisciplinary teams and meeting project deadlines. These skills ensure efficient data interpretation, accurate results, and successful project delivery in a dynamic, contract-based environment.
What are the most commonly searched types of Bioinformatics Engineer jobs in Boston, MA? The most popular types of Bioinformatics Engineer jobs in Boston, MA are:
What are popular job titles related to Contract Bioinformatics Engineer jobs in Boston, MA? For Contract Bioinformatics Engineer jobs in Boston, MA, the most frequently searched job titles are:
What job categories do people searching Contract Bioinformatics Engineer jobs in Boston, MA look for? The top searched job categories for Contract Bioinformatics Engineer jobs in Boston, MA are:
Contract Bioinformatics Engineer jobs near you
Infographic showing various Contract Bioinformatics Engineer job openings in Boston, MA as of August 2026, with employment types broken down into 25% Full Time, 25% Temporary, and 50% Contract. Highlights an 100% In-person job distribution, with an average salary of $142,376 per year, or $68.5 per hour.

Cloud Infrastructure/AI/ML Engineer

Winaxis

Boston, MA • On-site

$116K - $153K/yr

Contractor

Re-posted 15 days ago

Job description

Job Summary (List Format):
- Position: Cloud Infrastructure/AI/ML Engineer (Contract, 12+ months, Hybrid)
- Location: Waltham, MA (Hybrid: 1-2 days onsite; free parking; relocation at candidate’s expense)
- Focus: Enable infrastructure for AI/ML model development and bioinformatics applications
- Bioinformatics: Must have strong experience in bioinformatics, including pipeline execution and workflow management
- Key Responsibilities:
- Develop, deploy, and manage AI/ML models and frameworks
- Execute and manage bioinformatics pipelines and environments
- Manage data for diverse bioinformatics workflows
- Technical Skills:
- Minimum 3+ years in cloud infrastructure, AI/ML, and bioinformatics pipeline management
- Expertise in HPC (High Performance Computing), AWS, DNAnexus, AWS Sagemaker AI
- Experience with cloud platforms: AWS, GCP
- Proficiency in Python and Bash
- Containerization experience (Docker, Kubernetes preferred)
- Familiarity with S3 AWS Storage and data storage (nice to have)
- Experience with NGS data analysis workflow automation (Snakemake, Nextflow is a plus)
- Education: MS or PhD required
- Communication: Strong communication skills are essential
- Visa/Employment:
- All visa types accepted (including H1B, EAD-GC, L2 EAD, H4-EAD, but not OPT/CPT/TN/E3)
- C2C
- References required for interview
- Interview Policy:
- No AI assistance allowed during interviews; use of AI tools will result in immediate termination of the interview
- Client name disclosed after resume submission
- Additional Requirements:
- Willingness to relocate if not local
- Formatted resume, government photo ID, visa copy, I94/travel history (if applicable) required for submission