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Executive Bioinformatics Engineer Jobs in Boston, MA

C10 Labs

Managing Director, AI Biohub

Cambridge, MA · On-site

Working alongside C10's CEO and AI Bio Hub partners, you will identify exceptional founders, shape ... engineering, computational biology, bioinformatics, or a related field is preferred. Equivalent ...

Formation Bio

Director, Data Science

Boston, MA · On-site

$235K - $307K/yr

Present complex analytical findings to senior stakeholders, including executive leadership About ... programming skills, particularly in Python * Extensive experience in multi-modal bioinformatics ...

Benchling

Leader, Professional Services

Boston, MA · On-site

$145K - $195K/yr

... Immunology, Bioinformatics, Biological Engineering, or a related field * At least 4 years of ... IT project leads, and executives * Self-starter with the ability to thrive in a startup ...

New

Sapio Sciences

Solutions Consultant

Boston, MA · On-site +1

The Sapio team consists of expert and highly collaborative scientists, software developers, and ... The Sapio platform makes it easy for scientific, laboratory, and bioinformatics professionals to ...

Sapio Sciences

Solutions Consultant

Boston, MA · On-site +1

The Sapio team consists of expert and highly collaborative scientists, software developers, and ... The Sapio platform makes it easy for scientific, laboratory, and bioinformatics professionals to ...

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All JobsBioinformatics Engineer JobsExecutive Bioinformatics Engineer JobsExecutive Bioinformatics Engineer Jobs in Boston, MA

Executive Bioinformatics Engineer information

See Boston, MA salary details

$46.7K

$142.4K

$259.1K

How much do executive bioinformatics engineer jobs pay per year?

As of Aug 28, 2026, the average yearly pay for executive bioinformatics engineer in Boston, MA is $142,376.00, according to ZipRecruiter salary data. Most workers in this role earn between $104,300.00 and $170,600.00 per year, depending on experience, location, and employer.

What is the difference between Executive Bioinformatics Engineer vs Bioinformatics Engineer?

AspectExecutive Bioinformatics EngineerBioinformatics Engineer
CredentialsBachelor's/Master's in Bioinformatics, Computer Science, or related; often with leadership experienceBachelor's or Master's in Bioinformatics, Computer Science, or related
Work EnvironmentLeadership roles in biotech or pharma companies, overseeing projects and teamsHands-on data analysis, software development, and research tasks
Industry UsageUsed in corporate leadership, strategic planning, and project managementPrimarily in research labs, biotech firms, and academic settings

The main difference is that an Executive Bioinformatics Engineer combines technical expertise with leadership responsibilities, focusing on strategic project oversight, while a Bioinformatics Engineer primarily conducts hands-on data analysis and software development. Both roles require strong bioinformatics skills, but the Executive role emphasizes management and strategic planning within the industry.

What are the most commonly searched types of Bioinformatics Engineer jobs in Boston, MA?

The most popular types of Bioinformatics Engineer jobs in Boston, MA are:

Executive Bioinformatics Engineer jobs near you

Customer Success Engineer, Bioinformatics

Cambridge, MA • On-site

Watershed Informatics
Biotechnology Research and Development • 1 - 10 employees
Learn more about Watershed Informaticsexternal

Full-time

Re-posted 13 days ago

Job description

About Watershed
Our vision is to become the leading biocomputing platform. The future of biology is in big data analysis, and we are on a mission to accelerate digital drug discovery with the Watershed platform. Watershed enables scientists to conduct all essential analysis - from lab data to plot - with a single software platform.
We have attracted some of the best bioinformatics, engineering, and commercial talent, and we are growing! Join a team that's intellectually curious with a bias for action, headquartered in Cambridge, Massachusetts, composed of people who have come together to enable outcomes while empowering the research of all those committed to changing lives - all while bringing transformational change to a $40 billion industry.
About the Role
Customer Success Engineers work at the intersection of software engineering, bioinformatics, and customer success to understand and fulfill customer support needs.
Customers choose Watershed to analyze and share large biological data sources in flexible, powerful computing environments. Customers will engage you as a first escalation point - you will draw on a knowledge of Linux systems, software engineering, and bioinformatics to unpack and resolve requests.
You will track down support requests across the platform, partnering with our Product Manager and Head of Operations. Expect variety in the complexity and kinds of technology and bioinformatics challenges you face. As you troubleshoot recurring issues, you will document and elevate common requests and fixes to improve future support.
Responsibilities
  • Develop an intimate understanding of how customers use the Watershed platform.
  • Analyze and share data on customer usage, activity, and trends. Suggest upsell opportunities and advise on account-specific insights.
  • Triage, manage, and resolve incoming customer support requests. Requests will vary in complexity from Level 1 support to interrelated Linux, software, and bioinformatics issues.
  • Establish and uphold company support standards. Create resolution metrics and expand support programs as needed.
  • Create & manage a system for documenting solutions and workarounds for recurring requests so team members can resolve similar issues quickly.
  • Write platform guides and FAQs to support new feature rollouts. Develop case studies detailing tailored customer solutions.
  • Directly report to the Head of Operations & CEO. Escalate key support insights (i.e., 'buggy functions' or common user misunderstandings).
  • Ensure an excellent user experience on the Watershed platform

Qualifications
  • 1-3 years of professional experience supporting technical and non-technical customers as a bioinformatician. Experience working in a bioinformatics consultancy is strongly preferred
  • A working understanding of Linux commands, system troubleshooting, and Docker.
  • Proficiency with any one of Bash, Python, or R. Familiarity with all three is preferred.
  • Familiarity with bioinformatics, computational biology, or a Masters in Bioinformatics is preferred

Apply