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Full Time Bioinformatics Engineer Jobs in Boston, MA

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

South San Francisco, CA Job Type: Full-time ( Hybrid ) Equity: Highly Competitive Equity About Our ... Is curious about the intersection of biology, algorithms, and software engineering. * Gets excited ...

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

South San Francisco, CA Job Type: Full-time ( Hybrid ) Equity: Highly Competitive Equity About Our ... Is curious about the intersection of biology, algorithms, and software engineering. * Gets excited ...

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

South San Francisco, CA Job Type: Full-time ( Hybrid ) Equity: Highly Competitive Equity About Our ... Is curious about the intersection of biology, algorithms, and software engineering. * Gets excited ...

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

South San Francisco, CAJob Type: Full-time (Hybrid)Equity: Highly Competitive Equity About Our ... Is curious about the intersection of biology, algorithms, and software engineering. Gets excited ...

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

South San Francisco, CAJob Type: Full-time (Hybrid)Equity: Highly Competitive Equity About Our ... Is curious about the intersection of biology, algorithms, and software engineering. Gets excited ...

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

South San Francisco, CA Job Type: Full-time ( Hybrid ) Equity: Highly Competitive Equity About Our ... Is curious about the intersection of biology, algorithms, and software engineering. * Gets excited ...

Prime Medicine

Informatics Engineer

Cambridge, MA · On-site

Requirements : * 5+ years of full-time engineering experience (3+ for those with an MS or PhD) in production environments. * Strong Python programming skills. * Production AWS experience with depth ...

European Bioinformatics Institute

Field Engineer

Boston, MA · On-site

$85K - $100K/yr

Position Summary EBI Consulting looks to immediately hire a Field Engineer to join our Agency Due ... This is a full-time, salaried position, reporting to the Associate Operations Manager. The ideal ...

Addgene

Senior Quality Scientist I

Watertown, MA · On-site

$84K - $92K/yr

  • Medical

  • Dental

  • Life

  • Retirement

  • PTO

Lead NGS-related bioinformatic processes; serve as a technical resource for post-run data ... Experience with a programming or scripting language (Python, Bash, R, etc) and command line tools

Addgene

Senior Quality Scientist I

Watertown, MA · On-site

$84K - $92K/yr

  • Medical

  • Dental

  • Life

  • Retirement

  • PTO

Lead NGS-related bioinformatic processes; serve as a technical resource for post-run data ... Experience with a programming or scripting language (Python, Bash, R, etc) and command line tools

Alnylam Pharmaceuticals

Scientist, Metabolomics

Cambridge, MA · On-site

$110K - $165K/yr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Experience with relevant omics-based bioinformatics software; familiarity with basic programming ... Pay Range $110,400.00 - $165,600.00 The pay range reflects the full-time base salary range we ...

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All JobsBioinformatics Engineer JobsFull Time Bioinformatics Engineer JobsFull Time Bioinformatics Engineer Jobs in Boston, MA

Full Time Bioinformatics Engineer information

See Boston, MA salary details

$46.7K

$142.4K

$259.1K

How much do full time bioinformatics engineer jobs pay per year?

As of Aug 13, 2026, the average yearly pay for full time bioinformatics engineer in Boston, MA is $142,376.00, according to ZipRecruiter salary data. Most workers in this role earn between $104,300.00 and $170,600.00 per year, depending on experience, location, and employer.

How does a full time bioinformatics engineer typically collaborate with interdisciplinary teams?

As a full-time Bioinformatics Engineer, you will frequently work alongside biologists, data scientists, software developers, and clinical researchers. Collaboration often involves interpreting complex biological data, integrating analytical pipelines, and ensuring computational tools meet the needs of both research and clinical teams. Effective communication is key, as you'll translate biological questions into computational workflows and share results with non-technical stakeholders. This interdisciplinary teamwork not only enhances project outcomes but also contributes to your professional growth by exposing you to diverse perspectives and expertise.

What is a full time bioinformatics engineer?

A Full Time Bioinformatics Engineer is a professional who applies computational techniques and software development to analyze biological data, such as DNA, RNA, and protein sequences. They work with large datasets generated from experiments like genome sequencing to extract meaningful insights and support research in fields like genomics, drug discovery, and personalized medicine. Bioinformatics Engineers often collaborate with biologists, data scientists, and clinicians to develop tools, databases, and algorithms that advance our understanding of biological systems. Their work is essential in bridging the gap between biology and technology, enabling more efficient and accurate biological research.

What is the difference between Full Time Bioinformatics Engineer vs Data Scientist?

AspectFull Time Bioinformatics EngineerData Scientist
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fieldBachelor's or Master's in Data Science, Statistics, Computer Science
Work EnvironmentResearch labs, biotech companies, healthcare institutionsTech companies, finance, healthcare, consulting firms
Industry UsageGenomics, biotech, healthcare researchBusiness analytics, machine learning, predictive modeling

Full Time Bioinformatics Engineers focus on analyzing biological data, often in healthcare and biotech settings, requiring specialized bioinformatics skills. Data Scientists work across various industries, applying statistical and machine learning techniques to diverse datasets. While both roles involve data analysis, Bioinformatics Engineers specialize in biological and genomic data, whereas Data Scientists have a broader scope across different sectors.

What are the key skills and qualifications needed to thrive as a full time bioinformatics engineer?

To thrive as a Full Time Bioinformatics Engineer, you need a strong background in computational biology, proficiency in programming languages such as Python or R, and a relevant degree in bioinformatics, computer science, or a related field. Experience with bioinformatics tools (e.g., BLAST, GATK), databases, and familiarity with cloud computing platforms or high-throughput sequencing data is typically expected. Strong problem-solving skills, attention to detail, and effective communication abilities help you collaborate with interdisciplinary teams and translate complex data into actionable insights. These skills and qualities are essential for accurately analyzing biological data, supporting research goals, and driving innovation in life sciences.
What are the most commonly searched types of Bioinformatics Engineer jobs in Boston, MA? The most popular types of Bioinformatics Engineer jobs in Boston, MA are:
Full Time Bioinformatics Engineer jobs near you

Lead Bioinformatics Engineer (Hybrid)

Quest Diagnostics

Marlborough, MA • On-site

$155K/yr

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Re-posted 7 days ago

ExamOne rating

6.6

Company rating: 6.6 out of 10

Based on 9 frontline employees who took The Breakroom Quiz

97th of 120 rated laboratories

Job description


Pay Range: $155,000.00 - $175,000.00 / year
Salary offers are based on a wide range of factors including relevant skills, training, experience, education, and, where applicable, certifications obtained. Market and organizational factors are also considered. Successful candidates may be eligible to receive annual performance bonus compensation.
Benefits Information:
We are proud to offer best-in-class benefits and programs to support employees and their families in living healthy, happy lives. Our pay and benefit plans have been designed to promote employee health in all respects - physical, financial, and developmental. Depending on whether it is a part-time or full-time position, some of the benefits offered may include:
• Day 1 Medical, supplemental health, dental & vision for FT employees who work 30+ hours
• Best-in-class well-being programs
• Annual, no-cost health assessment program Blueprint for Wellness®
• healthyMINDS mental health program
• Vacation and Health/Flex Time
• 6 Holidays plus 1 "MyDay" off
• FinFit financial coaching and services
• 401(k) pre-tax and/or Roth IRA with company match up to 5% after 12 months of service
• Employee stock purchase plan
• Life and disability insurance, plus buy-up option
• Flexible Spending Accounts
• Annual incentive plans
• Matching gifts program
• Education assistance through MyQuest for Education
• Career advancement opportunities
• and so much more!
At Quest, we are on a continuous journey of discovery and development. It's this attitude that has made us an industry leader and the #1 Diagnostic Lab in the US. For those joining us, we offer exciting and fast-moving career opportunities where you can affect change at a rate unheard of in many organizations of our size and scope. While we invest in and develop technology to drive our innovations, our ongoing success relies on our people.
Quest Diagnostics Specialty Genetics products provide specific answers that clinicians need to deliver the appropriate diagnostic and prognostic care to their patients. You will work for the world leader in the industry, with a career where you will have the opportunity to collaborate and affect change while expanding your leadership skills and technical knowledge. You can make a real impact in a market that is growing and developing.
This position is in our Bioinformatics Solutions Engineering group, part of the Research and Development organization, in Molecular Genomics & Oncology unit. The team supports genetic/genomic testing in a highly regulated CAP/CLIA laboratory environment primarily using short and long-read sequencing as the basis of evidence. The right candidate will know how to balance innovation, standards, and quality with a practical understanding of when each is appropriate. The Bioinformatics Solutions Engineering group is a cross-functional unit focusing on end-to-end design, develop, document, validation and launching of new high quality diagnostic tests and services for the benefit our patients.
This professional will work in a Hybrid capacity requiring 3 days onsite at our Marlborough, MA facility.
Responsibilities
  • Lead technical design, implementation and delivery of projects aiming to launch new diagnostic tests and services. Act as technical owner for your project, being responsible for the end-to-end solution from technical side.
  • Work with cross-functional partners from business, operations, IT, R&D lab, geneticists, medical directors, and other bioinformatics stakeholders to create solutions that meet business and operational requirements.
  • Lead solution architecture and interface design including system architecture for bioinformatics and detailed data flow mapping.
  • Collaborate with stakeholders to ensure compliance of the solution with internal and external IT security and clinical policies and processes.
  • Work with bioinformatics domain leaders to select appropriate technology platforms for each step in the diagnostic process.
  • Oversee end-to-end testing and diagnostic test validation activities with the project team.
  • Lead the technical documentation and plan and execute handover to operations to ensure effective launch and operation of the solution.
  • Work with project management and report on progress, analyze risks and escalate issues to ensure accurate project management.

Qualifications
  • BS with 7+ years of experience, MS with 4+ years of experience, or PhD with 3+ years of experience in an industrial or academic setting working with clinical and biological data or equivalent and underlying technologies including bioinformatic methods, database development, query/scripting/programming languages, cloud development, agile methodology, DevOps and other data analysis tools.
  • At least 5 years of experience working in a regulated industrial life sciences environment.
  • At least 4 years of professional software development or technical engineering experience

Preferred Work experience and Skills:
  • Thorough understanding of end-to-end diagnostic process including ordering, wet lab, dry lab, result interpretation and result and data delivery.
  • Experience with solution design, system architecture, solution architecture, data flow modeling.
  • Experience in leading technical design and implementation of complex projects.
  • Experience with sequencing data analysis, bioinformatics, variant data analysis.
  • Knowledge of bioinformatics tools and workflow managers for sequencing data analysis and quality control.
  • Experience working with SQL and NoSQL databases.
  • Experience with designing and working with application programming interfaces (e.g. JSON based RESTful APIs).
  • Experience with designing and implementing solutions in the cloud. AWS experience is preferred.
  • Experience of working in clinical diagnostics setting (regulations, controlled processes, diagnostic test validation, environment management).
  • Solid understanding of human genetics and oncology in diagnostic setting.
  • Solid understanding of web lab process for DNA sequencing and working with or developing LIMS systems.
  • Infrastructure management: Terraform, AWS CDK.
  • Architecture design: Microsoft Visio, DrawIO, similar for crafting architecture diagrams.
  • Programming Languages: Python, javascript/typescript, R, etc.
  • Containerizing: Docker
  • Web Frameworks: Python Flask, React Native, Bootstrap
  • Reporting: R Markdown, Jupyter Notebook
  • Visualization: Experience with any of ggplot2/tidyverse, Plotly, matplot lib, Tableau, d3.js
  • Source Control: Git
  • CI/CD: Gitlab CI/CD, Github CI/CD

Education
  • Bachelor's Degree Required
  • Master's Degree or PhD Preferred

About the Team
Quest Diagnostics honors our service members and encourages veterans to apply.
While we appreciate and value our staffing partners, we do not accept unsolicited resumes from agencies. Quest will not be responsible for paying agency fees for any individual as to whom an agency has sent an unsolicited resume.
Equal Opportunity Employer: Race/Color/Sex/Sexual Orientation/Gender Identity/Religion/National Origin/Disability/Vets or any other legally protected status.

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