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Bioinformatics Engineer Jobs in Boston, MA (NOW HIRING)

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA

$170K - $190K/yr

Bioinformatics Scientist (Mid/Senior) Compensation: $170,000 - $190,000 Location: South San ... Is curious about the intersection of biology, algorithms, and software engineering. * Gets excited ...

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Bioinformatics Scientist (Mid/Senior) Compensation: $170,000 - $190,000 Location: South San ... Is curious about the intersection of biology, algorithms, and software engineering. * Gets excited ...

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Bioinformatics Scientist (Mid/Senior) Compensation: $170,000 - $190,000 Location: South San ... Is curious about the intersection of biology, algorithms, and software engineering. * Gets excited ...

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Bioinformatics Scientist (Mid/Senior) Compensation: $170,000 - $190,000 Location: South San ... Is curious about the intersection of biology, algorithms, and software engineering. * Gets excited ...

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA

$170K - $190K/yr

Bioinformatics Scientist (Mid/Senior) Compensation: $170,000 - $190,000 Location: South San ... Is curious about the intersection of biology, algorithms, and software engineering. * Gets excited ...

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Bioinformatics Scientist (Mid/Senior) Compensation: $170,000 - $190,000 Location: South San ... Is curious about the intersection of biology, algorithms, and software engineering. * Gets excited ...

ZS

Bioinformatics Leader

Boston, MA · On-site

$200K - $229K/yr

Deep, hands-on proficiency in bioinformatics tools and programming languages (e.g., Python, R, Nextflow, Snakemake) and experience with cloud-based compute environments * Domain expertise in at least ...

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Showing results 1-20

All JobsBioinformatics Engineer JobsBioinformatics Engineer Jobs in Boston, MA

Bioinformatics Engineer information

See Boston, MA salary details

$46.7K

$142.4K

$259.1K

How much do bioinformatics engineer jobs pay per year?

As of Jul 18, 2026, the average yearly pay for bioinformatics engineer in Boston, MA is $142,376.00, according to ZipRecruiter salary data. Most workers in this role earn between $104,300.00 and $170,600.00 per year, depending on experience, location, and employer.

What is a Bioinformatics Engineer?

A Bioinformatics Engineer is a professional who combines expertise in computer science, statistics, and biology to develop software tools and algorithms for analyzing biological data. They often work with large datasets such as genomic sequences, protein structures, and clinical information to help scientists make sense of complex biological systems. Their work is essential in fields like genomics, personalized medicine, and drug discovery, where managing and interpreting vast amounts of data is crucial. Bioinformatics Engineers may also collaborate with researchers to design experiments and interpret results, bridging the gap between biology and technology.

What are the key skills and qualifications needed to thrive as a Bioinformatics Engineer, and why are they important?

To thrive as a Bioinformatics Engineer, you need a strong background in biology, computer science, and statistics, often supported by a degree in bioinformatics or a related field. Experience with programming languages such as Python or R, familiarity with databases, and knowledge of tools like BLAST, Bioconductor, or next-generation sequencing (NGS) analysis platforms are typically required. Strong problem-solving, analytical thinking, and effective communication skills help you collaborate with interdisciplinary teams and convey complex findings. These skills and qualifications are essential for efficiently analyzing biological data, developing robust computational tools, and advancing research in genomics and life sciences.

What Is Bioinformatics Engineering?

A bioinformatics engineer uses various methods for the analysis of complex biological data such as gene sequence and protein absorption. In this career, your job duties include performing detailed data analysis, developing data queries, and presenting your results back to the research team. The qualifications needed for a career as a bioinformatics engineer include a bachelor’s degree in engineering, statistics, computer science, or mathematics. Some employers prefer a master’s degree as well. You also need strong analytical skills and a good understanding of the biosciences.

What are some common challenges faced by Bioinformatics Engineers when integrating new data sources into existing pipelines?

Bioinformatics Engineers often encounter challenges such as data format inconsistencies, varying quality of datasets, and the need to ensure compatibility with existing analysis pipelines. Integrating new data sources may require custom scripts or tools for parsing and preprocessing, as well as thorough validation to maintain reproducibility and reliability of results. Collaboration with wet-lab scientists and software engineers is essential to clarify data requirements and streamline the integration process.

What is the difference between Bioinformatics Engineer vs Bioinformatics Analyst?

AspectBioinformatics EngineerBioinformatics Analyst
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fields; programming skillsBachelor's or Master's in Bioinformatics, Biology, or related fields; data analysis skills
Work EnvironmentResearch labs, biotech companies, pharmaceutical firmsResearch institutions, healthcare organizations, biotech companies
Employer & Industry UsageDevelops tools, pipelines, and software for biological data analysisInterprets data, performs statistical analysis, and reports findings

While both roles require a background in bioinformatics and involve working with biological data, Bioinformatics Engineers focus on developing software and tools, whereas Bioinformatics Analysts primarily analyze and interpret data to support research and decision-making.

More about Bioinformatics Engineer jobs
What are the most commonly searched types of Bioinformatics Engineer jobs in Boston, MA? The most popular types of Bioinformatics Engineer jobs in Boston, MA are:
What are popular job titles related to Bioinformatics Engineer jobs in Boston, MA? For Bioinformatics Engineer jobs in Boston, MA, the most frequently searched job titles are:
What job categories do people searching Bioinformatics Engineer jobs in Boston, MA look for? The top searched job categories for Bioinformatics Engineer jobs in Boston, MA are:
What cities near Boston, MA are hiring for Bioinformatics Engineer jobs? Cities near Boston, MA with the most Bioinformatics Engineer job openings:
Bioinformatics Engineer jobs near you
Infographic showing various Bioinformatics Engineer job openings in Boston, MA as of July 2026, with employment types broken down into 88% Full Time, 5% Part Time, and 7% Contract. Highlights an 86% In-person, 2% Hybrid, and 12% Remote job distribution, with an average salary of $142,376 per year, or $68.5 per hour.
Bioinformatics Engineer

Bioinformatics Engineer

Dana-Farber Cancer Institute

Boston, MA

$75K - $81K/yr

Full-time

Re-posted 29 days ago

Dana-Farber Cancer Institute rating

8.3

Company rating: 8.3 out of 10

Based on 18 frontline employees who took The Breakroom Quiz

Job description

The McGraw/Patterson Center for Population Sciences at the Dana-Farber Cancer Institute (DFCI) is seeking a motivated entry-level Bioinformatics Engineer to join its Data Management team, supporting high-impact research initiatives while contributing to the development of scalable data and AI-driven platforms.
This position is closely aligned with research programs at the Lowe Center for Thoracic (Lung) Oncology, leveraging a robust engineering and multi-cloud ecosystem, and providing a unique opportunity to collaborate directly with research and clinical teams focused on thoracic cancers within a cross-center model.
The successful candidate will work at the intersection of biology, data science, engineering, and AI—supporting immediate research needs while helping design and develop systems that scale across teams, centers, and the broader institute.

Located in Boston and the surrounding communities, Dana-Farber Cancer Institute is a leader in life changing breakthroughs in cancer research and patient care. We are united in our mission of conquering cancer, HIV/AIDS, and related diseases. We strive to create an inclusive, diverse, and equitable environment where we provide compassionate and comprehensive care to patients of all backgrounds, and design programs to promote public health particularly among high-risk and underserved populations. We conduct groundbreaking research that advances treatment, we educate tomorrow's physician/researchers, and we work with amazing partners, including other Harvard Medical School-affiliated hospitals.
 

PRIMARY DUTIES AND RESPONSIBILITIES:

  • Designs and develops software, databases and interfaces for analyzing and manipulating biological data. 
  • Draws upon knowledge of biology to improve data mining and management techniques.
  • Collaborates with laboratory researchers to develop high throughput data processing and analysis capability.
  • Adds new software that has been internally developed or imported from outside sources to in-house systems.
  • Directs and guides DNA, RNA and protein sequence database searches and the computational analysis of resulting data.
  • Provides direct technical and scientific customer support and helps guide, implement and maintain further improvements to bioinformatics software.
  • Works with the entire life science team to diagnose and fix issues with software.

MINIMUM JOB QUALIFICATIONS:

Bachelors degree required, MS preferred or PhD in bioinformatics, computer science and/or the life sciences and 0-2 years relevant experience. Performs primary duties as above as directed and requires close to moderate supervision.  

KNOWLEDGE, SKILLS, AND ABILITIES REQUIRED:

  • Familiarity with simple programming using Perl/Python or Java, statistical programming using R or related tools, web-development, and database query through SQL.
  • Familiarity with principles of experimental design and modern data analysis paradigms is required.
  • Strong interpersonal skills – ability to effectively interact with all levels of staff and external contacts.
  • Excellent analytical, organizational and time management skills.

At Dana-Farber Cancer Institute, we work every day to create an innovative, caring, and inclusive environment where every patient, family, and staff member feels they belong. As relentless as we are in our mission to reduce the burden of cancer for all, we are committed to having faculty and staff who offer multifaceted experiences. Cancer knows no boundaries and when it comes to hiring the most dedicated and compassionate professionals, neither do we. If working in this kind of organization inspires you, we encourage you to apply.

Dana-Farber Cancer Institute is an equal opportunity employer and affirms the right of every qualified applicant to receive consideration for employment without regard to race, color, religion, sex, gender identity or expression, national origin, sexual orientation, genetic information, disability, age, ancestry, military service, protected veteran status, or other characteristics protected by law.  

EEO Poster.

Pay Transparency Statement

The hiring range is based on market pay structures, with individual salaries determined by factors such as business needs, market conditions, internal equity, and based on the candidate’s relevant experience, skills and qualifications.

For union positions, the pay range is determined by the Collective Bargaining Agreement (CBA).

$75,000.00 - $81,500.00

What Dana-Farber Cancer Institute employees say

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About Dana-Farber Cancer Institute

Sourced by ZipRecruiter

Dana-Farber Cancer Institute is a leader in life changing breakthroughs in cancer research and patient care. We are united in our mission of conquering cancer, HIV/AIDS and related diseases. We strive to create an inclusive, diverse, and equitable environment where we provide compassionate and comprehensive care to patients of all backgrounds, and design programs to promote public health particularly among high-risk and underserved populations. We conduct groundbreaking research that advances treatment, we educate tomorrow's physician/researchers, and we work with amazing partners, including other Harvard Medical School-affiliated hospitals.

Industry

Health care and social assistance

Company size

1,001 - 5,000 Employees

Headquarters location

Boston, MA, US

Year founded

1947

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