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Bioinformatics Engineer Jobs in Boston, MA (NOW HIRING)

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Bioinformatics Scientist (Mid/Senior) Compensation: $170,000 - $190,000 Location: South San ... Is curious about the intersection of biology, algorithms, and software engineering. Gets excited ...

Vivo HealthStaff

Bioinformatics Scientist

Boston, MA

$170K - $190K/yr

Bioinformatics Scientist (Mid/Senior) Compensation: $170,000 - $190,000 Location: South San ... Is curious about the intersection of biology, algorithms, and software engineering. * Gets excited ...

ZS

Bioinformatics Leader

Boston, MA · On-site

$200K - $229K/yr

Deep, hands-on proficiency in bioinformatics tools and programming languages (e.g., Python, R, Nextflow, Snakemake) and experience with cloud-based compute environments * Domain expertise in at least ...

Watershed Informatics

Software Engineer

Boston, MA

We have attracted some of the best bioinformatics, engineering, and commercial talent, and we are growing! Join a team that's intellectually curious with a bias for action, headquartered in Cambridge ...

AA2IT

Bioinformatics Scientist - II

Cambridge, MA · On-site

$75/hr

Senior Bioinformatics Scientist Location: Cambridge, MA Pay Rate: $75/HR - 100/HR Must Have ... Strong programming skills in R, Python, and Bash. * Experience with HPC systems and AWS Cloud (IAM ...

AA2IT

Bioinformatics Scientist - II

Cambridge, MA · On-site

$75/hr

Senior Bioinformatics Scientist Location: Cambridge, MA Pay Rate: $75/HR - 100/HR Must Have ... Strong programming skills in R, Python, and Bash. * Experience with HPC systems and AWS Cloud (IAM ...

Watershed Informatics

Infrastructure Engineer

Cambridge, MA · On-site

$117K - $154K/yr

We have attracted some of the best bioinformatics, engineering, and commercial talent, and we are growing! Join a team that's intellectually curious with a bias for action, headquartered in Cambridge ...

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Showing results 21-40

All JobsBioinformatics Engineer JobsBioinformatics Engineer Jobs in Boston, MA

Bioinformatics Engineer information

See Boston, MA salary details

$46.7K

$142.4K

$259.1K

How much do bioinformatics engineer jobs pay per year?

As of Aug 19, 2026, the average yearly pay for bioinformatics engineer in Boston, MA is $142,374.00, according to ZipRecruiter salary data. Most workers in this role earn between $104,300.00 and $170,600.00 per year, depending on experience, location, and employer.

What is a bioinformatics engineer?

A Bioinformatics Engineer is a professional who combines expertise in computer science, statistics, and biology to develop software tools and algorithms for analyzing biological data. They often work with large datasets such as genomic sequences, protein structures, and clinical information to help scientists make sense of complex biological systems. Their work is essential in fields like genomics, personalized medicine, and drug discovery, where managing and interpreting vast amounts of data is crucial. Bioinformatics Engineers may also collaborate with researchers to design experiments and interpret results, bridging the gap between biology and technology.

What are the key skills and qualifications needed to thrive as a bioinformatics engineer?

To thrive as a Bioinformatics Engineer, you need a strong background in biology, computer science, and statistics, often supported by a degree in bioinformatics or a related field. Experience with programming languages such as Python or R, familiarity with databases, and knowledge of tools like BLAST, Bioconductor, or next-generation sequencing (NGS) analysis platforms are typically required. Strong problem-solving, analytical thinking, and effective communication skills help you collaborate with interdisciplinary teams and convey complex findings. These skills and qualifications are essential for efficiently analyzing biological data, developing robust computational tools, and advancing research in genomics and life sciences.

What are some common challenges faced by bioinformatics engineers when integrating new data sources into existing pipelines?

Bioinformatics Engineers often encounter challenges such as data format inconsistencies, varying quality of datasets, and the need to ensure compatibility with existing analysis pipelines. Integrating new data sources may require custom scripts or tools for parsing and preprocessing, as well as thorough validation to maintain reproducibility and reliability of results. Collaboration with wet-lab scientists and software engineers is essential to clarify data requirements and streamline the integration process.

What is the difference between Bioinformatics Engineer vs Bioinformatics Analyst?

AspectBioinformatics EngineerBioinformatics Analyst
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fields; programming skillsBachelor's or Master's in Bioinformatics, Biology, or related fields; data analysis skills
Work EnvironmentResearch labs, biotech companies, pharmaceutical firmsResearch institutions, healthcare organizations, biotech companies
Employer & Industry UsageDevelops tools, pipelines, and software for biological data analysisInterprets data, performs statistical analysis, and reports findings

While both roles require a background in bioinformatics and involve working with biological data, Bioinformatics Engineers focus on developing software and tools, whereas Bioinformatics Analysts primarily analyze and interpret data to support research and decision-making.

What does a bioinformatics engineer do?

A bioinformatics engineer develops and applies computational tools and algorithms to analyze biological data, such as genetic sequences and molecular structures. They often work with programming languages like Python or R, utilize databases, and collaborate with biologists to interpret data for research or medical purposes.
More about Bioinformatics Engineer jobs

What are the most commonly searched types of Bioinformatics Engineer jobs in Boston, MA?

The most popular types of Bioinformatics Engineer jobs in Boston, MA are:

What are popular job titles related to Bioinformatics Engineer jobs in Boston, MA?

For Bioinformatics Engineer jobs in Boston, MA, the most frequently searched job titles are:

What job categories do people searching Bioinformatics Engineer jobs in Boston, MA look for?

The top searched job categories for Bioinformatics Engineer jobs in Boston, MA are:

What cities near Boston, MA are hiring for Bioinformatics Engineer jobs?

Cities near Boston, MA with the most Bioinformatics Engineer job openings:

Bioinformatics Engineer jobs near you
Infographic showing various Bioinformatics Engineer job openings in Boston, MA as of August 2026, with employment types broken down into 90% Full Time, 5% Part Time, and 5% Contract. Highlights an 86% Physical, 6% Hybrid, and 8% Remote job distribution, with an average salary of $142,374 per year, or $68.4 per hour.

Bioinformatics Scientist

Vivo HealthStaff

Boston, MA • On-site

$170K - $190K/yr

Full-time

Re-posted 6 days ago

Job description

Bioinformatics Scientist (Mid/Senior) Compensation: $170,000 - $190,000 Location: South San Francisco, CAJob Type: Full-time (Hybrid)Equity: Highly Competitive Equity About Our ClientTechStaffers has partnered with one of our clients & they are on a mission to accelerate new cures and promote a healthier planet by unlocking a new level of productivity for scientists. Their sequencing services are used daily by thousands of innovators, including Nobel laureates, Fortune 100 pharma, and over 70,000 scientists. They began by revolutionizing plasmid sequencing, making it exponentially cheaper and faster. Now, they are expanding that same disruptive model across all of genomics, including a new RNA-seq service, to provide scientists everywhere with faster and more affordable access to data. Every team member plays a crucial role in driving the future of biotech research, building the world's most efficient sequencing engine that operates overnight and scales globally.Position OverviewWe are seeking a highly motivated mid- to senior-level Bioinformatics Scientist to work on the bioinformatics engine that powers this impact. This role is heavily bioinformatics-focused, emphasizing deep domain expertise and the building of scalable products over general software platform skills. You will wear many hats, leading projects from concept through production while maintaining strong ownership of your work. Key ResponsibilitiesBuild blazing-fast, production-grade bioinformatics workflows that process thousands of samples per day. Develop novel algorithms that turn raw sequencing data into fast, intuitive, and accurate insights. Hunt down bugs and tame the chaos of real-world sequencing data, including biological artifacts and platform quirks. Translate bioinformatics outputs into a dynamic scientific UX that feels magical to researchers. Stay on top of cutting-edge tools and find creative ways to integrate them into real-world pipelines. Mentor teammates and grow your own skills in a fast-moving, collaborative environment. Qualifications & RequirementsEducation: PhD in Bioinformatics, Computer Science, Statistics, Biology, Biochemistry, Physics, or a closely related field.Experience: 3+ years of experience developing production bioinformatics pipelines. Industry Background: Minimum of 2 years of industry experience; candidates whose only experience is in academia will not be considered.Domain Expertise: Strong background in microbial ecology or related fields, with a distinct preference for expertise in microbial genomics.Technical Tools: Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required.Sequencing Data: Hands-on work with Illumina or Oxford Nanopore sequencing platforms.Product Impact: Proven experience building scalable bioinformatics products and clear evidence of delivering impactful, independent projects.Bonus: Contribution of a novel bioinformatics tool or algorithm is highly regarded as a signal of a top-tier candidate. Ideal Candidate ProfileThrives with high agency and high ownership, leading projects from idea to production. Exhibits strong leadership qualities, initiative, and a clear motivation to advance their career.Is curious about the intersection of biology, algorithms, and software engineering. Gets excited knowing their work directly accelerates the next generation of medicines and biotechnology. Values clear communication and loves helping others level up. Is energized by a tight-knit, fast-paced team environment. Visa RequirementsVisa sponsorship is generally not available.Able to accommodate TN or H-1B1
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About Vivo HealthStaff

Sourced by ZipRecruiter

Vivo HealthStaff provides permanent recruitment services for both clinical and administrative positions in the healthcare sector. Over the past 2 years, our clients have seen a 98% retention rate with Vivo HealthStaff placements.

Industry

Health care and social assistance

Company size

11 - 50 Employees

Headquarters location

Dublin, CA, US

Year founded

2016

Social media

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