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Senior Automation Engineer Jobs in Boston, MA (NOW HIRING)

Senior Automation Engineer with hands-on Rockwell Technologies, specifically on Rockwell PLCs, FactoryTalk View Studio, FactoryTalk View SE, and FactoryTalk Batch. Important to have Life Sciences GMP ...

... level engineers on the squad, establishing code quality standards, review practices, and AI integration patterns. * Support the evaluation and adoption of emerging automation and AI tooling ...

Sr. Automation Control Engineer

Waltham, MA · On-site

$112K - $147K/yr

Nova Biomedical is building its next generation of automation capabilities across multiple manufacturing sites and is seeking a hands-on Sr. Automation Control Engineer with strong manufacturing ...

Showing results 21-40

Senior Automation Engineer information

See Boston, MA salary details

$56K

$132.4K

$182.5K

How much do senior automation engineer jobs pay per year?

As of Sep 2, 2026, the average yearly pay for senior automation engineer in Boston, MA is $132,383.00, according to ZipRecruiter salary data. Most workers in this role earn between $113,000.00 and $148,300.00 per year, depending on experience, location, and employer.

What is a senior automation engineer?

The duties of a senior automation engineer are to develop, design, and configure systems that automate processes, such as manufacturing or software processes. Some people in this position work exclusively with software design while others work with hardware design and production. Some may provide both digital and physical solutions to automation problems. Regardless of the field, the responsibilities of a senior automation engineer are to improve efficiency while reducing the number of people it takes to complete a given process. Qualifications typically include a bachelor’s or master’s degree, experience in the industry, and leadership skills.

What are the key skills and qualifications needed to thrive as a senior automation engineer, and why are they important?

To thrive as a Senior Automation Engineer, you need a deep understanding of automation frameworks, scripting languages (such as Python or Java), and a relevant engineering degree. Familiarity with tools like Selenium, Jenkins, Docker, and CI/CD systems, along with certifications like ISTQB or Certified Automation Professional (CAP), is often required. Strong problem-solving abilities, leadership, effective communication, and collaboration skills help you excel in guiding teams and managing complex projects. These skills and qualifications are vital for ensuring the reliability, scalability, and efficiency of automated systems in fast-paced technical environments.

How does a senior automation engineer typically collaborate with cross-functional teams during large-scale projects?

Senior Automation Engineers frequently work alongside software developers, QA specialists, and operations teams to design and implement robust automated testing frameworks or process automation solutions. They often lead discussions to identify automation opportunities, define requirements, and ensure that automation integrates smoothly into existing workflows. Effective communication and documentation skills are essential, as they must translate complex technical needs for non-technical stakeholders and align efforts across departments. Collaboration may also involve mentoring junior engineers and conducting code reviews to maintain high standards and consistency.

What is the difference between Senior Automation Engineer vs Automation Engineer?

AspectSenior Automation EngineerAutomation Engineer
Required CredentialsBachelor's degree in engineering or related field; often some certifications in automation toolsBachelor's degree in engineering or related field; certifications in automation tools are common
Work EnvironmentDesigning, developing, and overseeing automation systems; leading projectsImplementing automation solutions; supporting existing systems
Employer & Industry UsageManufacturing, software, automotive, and industrial sectorsManufacturing, software development, and industrial sectors

Senior Automation Engineers typically have more experience, lead projects, and handle complex automation systems, while Automation Engineers focus on implementing and supporting automation solutions. Both roles require similar credentials and are used across various industries, but senior roles involve more leadership and strategic responsibilities.

What are the most commonly searched types of Automation Engineer jobs in Boston, MA?

The most popular types of Automation Engineer jobs in Boston, MA are:

What are popular job titles related to Senior Automation Engineer jobs in Boston, MA?

For Senior Automation Engineer jobs in Boston, MA, the most frequently searched job titles are:

What cities near Boston, MA are hiring for Senior Automation Engineer jobs?

Cities near Boston, MA with the most Senior Automation Engineer job openings:

Infographic showing various Senior Automation Engineer job openings in Boston, MA as of August 2026, with employment types broken down into 90% Full Time, 5% Part Time, and 5% Contract. Highlights an 87% Physical, 5% Hybrid, and 8% Remote job distribution, with an average salary of $132,383 per year, or $63.6 per hour.

$137K - $215K/yr

Full-time

Posted 7 days ago


Takeda Pharmaceuticals rating

7.3

Company rating: 7.3 out of 10

Based on 71 frontline employees who took The Breakroom Quiz

70th of 86 rated pharmaceutical


Job description

By clicking the "Apply" button, I understand that my employment application process with Takeda will commence and that the information I provide in my application will be processed in line with Takeda's Privacy Notice and Terms of Use. I further attest that all information I submit in my employment application is true to the best of my knowledge.

Job Description

About the role:
The Senior Automation Engineer is responsible for leading lab automation and digital capability initiatives that support in-process analytical testing across biologics and synthetic molecule testing to improve organization KPI matrix. In this role, you will help design, implement, and maintain fit-for-purpose, modular, fully automated, end-to-end analytical testing platforms and digital tools that support faster, more reliable laboratory work.
How you will contribute:

  • Lead the design, implementation, and life cycle management of modular and fully automated analytical testing platforms for in-process testing.

  • Implement digital capabilities such as agentic and non-agentic agents, visualization tools, data management platforms, and database solutions to improve business efficiency.

  • Partner with Process Development, Analytical Development, Characterization and Attribute Sciences, Quality, and Stability teams to understand their needs, reduce redundancy, and deliver lab automation solutions.

  • Lead lab automation and digital projects using clear project plans, change management approaches, and practical delivery of methods.

  • Evaluate, onboard, and manage robotic systems, software, and vendor solutions for lab automation.

  • Develop technical strategies, identify gaps and opportunities, and support decisions on automation, digital tools, and analytical method development.

  • Contribute to the value capture from automation and digital work through continuous improvement and scalable solutions.


What you bring to Takeda:

  • Either BSc., MSc., or Ph.D. in Analytical Chemistry, Pharmaceutical Sciences or related fields with lab automation and digital industry experience OR a degree in Information Technology or Computer Science with industry experience in analytical testing and method development environment.

  • Minimum of 3 years (PhD) or 9 years (MS) or 11 years (BS) of relevant industry experience.

  • Strong expertise in integrated and modular laboratory automation systems, including liquid handlers such as Tecan Evo and Fluent, and SCARA robotic modular systems such as Thermo Inspire and HiRes FlexPod or FlexCart.

  • Experience developing automated analytical methods and orchestration workflows using scheduler and control platforms such as Momentum and Cellario OS.

  • Expertise in basic programming & coding for statistical and advanced data analytics (Py-thon, R); data automation platforms such as Domino Data Lab and database solutions such as SQL.

  • Proven track record of leading projects and initiatives with minimal supervision.

  • Effective verbal, written, and scientific data presentation skills.

  • Knowledge of analytical testing methods used for in-process testing of biologics and synthetic molecules is desirable.

  • Knowledge of ICH and other regulatory guidance for analytical method development and life cycle management is desirable.

  • Exposure to chromatographic, electrophoretic, and isoelectric focusing methods, including ultra-high-performance liquid chromatography, high-performance liquid chromatography, capillary electrophoresis, CE-SDS, Maurice, LabChip GXII, or enzyme-linked immunosorbent assay methods.

Takeda Compensation and Benefits Summary

We understand compensation is an important factor as you consider the next step in your career. We are committed to equitable pay for all employees, and we strive to be more transparent with our pay practices.

For Location:

Lexington, MA

U.S. Base Salary Range:

$137,000.00 - $215,270.00


The estimated salary range reflects an anticipated range for this position. The actual base salary offered may depend on a variety of factors, including the qualifications of the individual applicant for the position, years of relevant experience, specific and unique skills, level of education attained, certifications or other professional licenses held, and the location in which the applicant lives and/or from which they will be performing the job.The actual base salary offered will be in accordance with state or local minimum wage requirements for the job location.


For information about our benefits, please click here.


EEO Statement

Takeda is proud in its commitment to creating a diverse workforce and providing equal employment opportunities to all employees and applicants for employment without regard to race, color, religion, sex, sexual orientation, gender identity, gender expression, parental status, national origin, age, disability, citizenship status, genetic information or characteristics, marital status, status as a Vietnam era veteran, special disabled veteran, or other protected veteran in accordance with applicable federal, state and local laws, and any other characteristic protected by law.

LocationsLexington, MAWorker TypeEmployeeWorker Sub-TypeRegularTime TypeFull time

Job Exempt

YesIt is unlawful in Massachusetts to require or administer a lie detector test as a condition of employment or continued employment. An employer who violates this law shall be subject to criminal penalties and civil liability.

What Takeda Pharmaceuticals employees say

Pay

Benefits

Hours and flexibility

Workplace

Get the full story on Breakroom


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About Takeda Ventures

Sourced by ZipRecruiter

Industry

Investment clubs and venture capital companies, pharmaceutical product wholesalers and pharmaceutical and medicine manufacturing

Company size

1 - 10 Employees

Headquarters location

San Diego, CA, US

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