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Protein Engineer Jobs in Indiana (NOW HIRING)

Amgen

Protein Design Product Owner What you will do Let'sdo this.Let'schange the world.Within Amgen ... Software Engineering,Computer Science, Computational Biology * A strong background inworkflow ...

Cargill

Process Engineer

Hammond, IN · On-site

Our portfolio includes poultry, beef, egg, alternative protein, salt, oils, starches, sweeteners, cocoa and chocolate. Job Purpose and Impact The Process Engineer will apply process and project ...

1440 Foods

Senior Process Engineer

Jeffersonville, IN · On-site

$99K - $128K/yr

Pure Protein ® nutrition bars; and Body Fortress ® high efficacy protein powders; MET-Rx ® high ... The Senior Process Engineer serves as a cornerstone of operational excellence at our food ...

New

Cargill

Process Engineer

Hammond, IN · On-site

Our portfolio includes poultry, beef, egg, alternative protein, salt, oils, starches, sweeteners, cocoa and chocolate. Job Purpose and Impact The Process Engineer will apply process and project ...

Cargill

Process Engineer

Hammond, IN

Our portfolio includes poultry, beef, egg, alternative protein, salt, oils, starches, sweeteners, cocoa and chocolate. Job Purpose and Impact The Process Engineer will apply process and project ...

CYNET SYSTEMS

Associate Investigator

Indianapolis, IN · On-site

$28/hr

We are seeking a contract Associate Investigator to support protein expression and analytical ... Bachelor's degree in Biology, Microbiology, Molecular Biology, Biochemistry, Chemical Engineering ...

Elanco

Principal Research Scientist

Indianapolis, IN · Hybrid

Act as a key scientific liaison, collaborating closely with leaders in medicinal chemistry, protein engineering, immunology, and virology to drive projects forward. What You Need to Succeed (Minimum ...

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All JobsProtein Engineer JobsProtein Engineer Jobs in Indiana

Protein Engineer information

See Indiana salary details

$22.5K

$86.3K

$156.6K

How much do protein engineer jobs pay per year?

As of Jun 19, 2026, the average yearly pay for protein engineer in Indiana is $86,262.00, according to ZipRecruiter salary data. Most workers in this role earn between $59,058.00 and $108,742.00 per year, depending on experience, location, and employer.

What are the typical daily tasks and projects for a Protein Engineer?

Protein Engineers typically spend their days designing and conducting experiments to modify and improve protein characteristics, analyzing data from assays, and collaborating with cross-functional teams such as molecular biologists and biochemists. Their work often involves using specialized laboratory equipment, computational modeling tools, and maintaining detailed records of their experimental results. Projects may include developing enzymes for industrial processes, optimizing therapeutic proteins, or engineering innovative biomaterials. The pace can be dynamic, with a mix of independent bench work and group meetings to discuss progress, troubleshoot challenges, and plan next steps. This collaborative environment offers opportunities to learn from peers and contribute to cutting-edge scientific advancements.

What are the key skills and qualifications needed to thrive in the Protein Engineer position, and why are they important?

To thrive as a Protein Engineer, you need expertise in molecular biology, biochemistry, and protein structure-function analysis, often supported by an advanced degree in a relevant scientific field. Familiarity with tools such as protein modeling software, high-throughput screening systems, and genetic engineering techniques is commonly required. Attention to detail, strong analytical thinking, and effective teamwork are valuable soft skills in this role. These abilities are crucial for designing, optimizing, and testing proteins with desired properties, ensuring impactful contributions to research or product development.

What does a Protein Engineer do?

A Protein Engineer designs and modifies proteins for specific functions in fields like medicine, biotechnology, and bioengineering. They use computational modeling, molecular biology techniques, and biochemical assays to improve protein stability, activity, or binding properties. Their work is crucial for developing new therapeutics, enzymes, and biomaterials for various industries.

What are the most commonly searched types of Protein Engineer jobs in Indiana? The most popular types of Protein Engineer jobs in Indiana are:
What are popular job titles related to Protein Engineer jobs in Indiana? For Protein Engineer jobs in Indiana, the most frequently searched job titles are:
What job categories do people searching Protein Engineer jobs in Indiana look for? The top searched job categories for Protein Engineer jobs in Indiana are:
Protein Engineer jobs near you
Infographic showing various Protein Engineer job openings in Indiana as of June 2026, with employment types broken down into 92% Full Time, 4% Part Time, and 4% Contract. Highlights an 87% Physical, 6% Hybrid, and 7% Remote job distribution, with an average salary of $86,262 per year, or $41.5 per hour.

Biologist-Protein Optimization Team

MyGradJob

Indianapolis, IN • On-site

Other

Posted 12 days ago

Job description

Company Description

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our 39,000 employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities through philanthropy and volunteerism. We give our best effort to our work, and we put people first. We're looking for people who are determined to make life better for people around the world.

Job Description
  • APPLY HERE!!! http://mygradjob.com/job/biologist-protein-optimization-team/

This position is within the Protein Optimization Team of Biotechnology Discovery Research, which is responsible for generating, characterizing, and optimizing biotherapeutics from lead generation to lead optimization and preclinical development.

We are seeking a motivated researchassociate to join our talented multidisciplinary team focused on optimizing protein biotherapeutics. You will be responsible for purifying proteins and antibodies for protein engineering and structure/function analysis. Youl will also be responsible for characterizing biopharmaceutical properties using biochemical, analytical and biophysical techniques towards the identification and mitigation of developability risks. You should possess strong core competency in protein biochemistry, with experience in molecular biology, purification, and protein characterization. Moreover, individuals within the Protein Optimization Team are expected to engage in cross-disciplinary efforts across discovery and development.

Qualifications

Basic Qualifications

  • Bachelor's degree with 2+ years of research experience or
  • MS degree in Biochemistry or related field

Qualified candidates must be legally authorized to be employed in the United States. Lilly does not anticipate providing sponsorship for employment visa status (e.g., H-1B or TN status) for this employment position.

Additional Skills/Preferences

  • Hands-on experience in cloning, purification, and characterization of proteins.
  • Capability of independently designing experiments, generating data, interpreting results and documenting work.
  • Effective oral and written communication skills, self management, task planning and organization skills
  • Demonstrated ability to work in a team environment
  • Experience with AKTA purification systems and analytical HPLC chromatography (SEC, IEX, RP) is a plus
  • Working knowledge of protein-protein interaction binding kinetics
Additional Information

All your information will be kept confidential according to EEO guidelines.

Apply