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Nonprofit Controller Jobs in Indiana (NOW HIRING)

CFS

Controller (Non-Profit)

Indianapolis, IN · Hybrid

$95K - $120K/yr

Controller (Non‑Profit) Indianapolis, IN Hybrid schedule (up to 2 days work from home) $95,000 - $120,000 base salary (flexible based on experience and nonprofit complexity) A mission‑driven ...

CFS

Controller

Indianapolis, IN · Hybrid

$105K - $125K/yr

Controller Salary: $105,000 - $125,000 Location: Indianapolis, IN (Hybrid - 3 days in office / 2 ... Use modern nonprofit systems including Sage Intacct and Salesforce * Take ownership of compliance ...

CFS

Controller

Indianapolis, IN

$115K - $130K/yr

Indianapolis, IN Salary: $115,000 - $130,000 depending on experience Non-profit Industry Overview The Controller leads all accounting operations and financial reporting for a mission-driven nonprofit.

CFS

Assistant Controller

Indianapolis, IN

$90K - $110K/yr

Carmel, IN Salary: $90,000 - $110,000 Why This Opportunity Stands Out: • Our client is a mission-driven nonprofit organization seeking a strong Assistant Controller to support financial operations ...

CFS

Assistant Controller

Indianapolis, IN

$80K - $1M/yr

If you are a detail-oriented individual with a passion for non-profit organizations and a strong background in finance, we encourage you to apply. Title: Assistant Controller Salary: $80,000-$100 ...

Now CFO

Controller Consultant

Indianapolis, IN · On-site

$130K - $140K/yr

Seeking Controller accountants with a variety of experience in Multiple industries (preferably manufacturing, construction, non-profit and healthcare). We value candidates with a strong background in ...

Lasting Change Inc

Controller

Fort Wayne, IN · On-site

Our team supports a network of like-minded nonprofits, each working toward shared goals with unique approaches, allowing for meaningful, diverse impact. As a Controller, you'll play a key role in ...

Now CFO

Controller Consultant

Indianapolis, IN · Hybrid

$130K - $140K/yr

Seeking Controller accountants with a variety of experience in Multiple industries (preferably manufacturing, construction, non-profit and healthcare). We value candidates with a strong background in ...

Now CFO

Controller Consultant

Indianapolis, IN · Hybrid

$130K - $140K/yr

Seeking Controller accountants with a variety of experience in Multiple industries (preferably manufacturing, construction, non-profit and healthcare). We value candidates with a strong background in ...

CFS

Controller

South Bend, IN · Hybrid

$80K - $95K/yr

Controller Salary: $80,000-$95,000 Why This Role Stands Out: This is a unique opportunity to step ... Experience with government, municipal, nonprofit, or grant reporting strongly preferred

Masco Corporation

Category Controller

Indianapolis, IN · On-site

$121K - $190K/yr

The Category Controller is responsible for all financial analysis and accounting needs for the ... Employees share their time, skills and talent with charities and nonprofit organizations across the ...

CFS

Senior Accountant

Indianapolis, IN · Hybrid

$85K - $100K/yr

Nonprofit Schedule: Hybrid Why This Opportunity Stands Out: • Well-known, highly stable nonprofit ... directly to the Assistant Controller with strong visibility and leadership exposure • ...

New Hope Services Inc

Staff Accountant

Jeffersonville, IN · On-site

$50K - $57K/yr

... nonprofit finance within a structured, supportive environment. You'll work closely with the Controller and Senior Staff Accountant, gaining exposure to fund accounting, financial reporting, and audit ...

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Nonprofit Controller information

How does a Nonprofit Controller typically collaborate with program managers and development teams?

As a Nonprofit Controller, you will regularly work with program managers and development teams to ensure proper allocation of funds and compliance with grant requirements. This collaboration often involves budget planning, financial reporting, and providing guidance on allowable expenses. Open communication is key, as you'll help translate financial data into actionable insights that support program objectives and fundraising efforts. Building strong relationships with these teams is essential for accurate financial tracking and organizational success.

What are the key skills and qualifications needed to thrive as a Nonprofit Controller, and why are they important?

To thrive as a Nonprofit Controller, you need strong expertise in nonprofit accounting, financial analysis, and compliance, usually supported by a bachelor’s degree in accounting or finance and often a CPA certification. Familiarity with fund accounting software such as QuickBooks Nonprofit, Sage Intacct, or Blackbaud Financial Edge is typically required. Exceptional attention to detail, integrity, and strong communication skills help build trust and facilitate collaboration across departments. These skills are crucial for maintaining financial transparency, ensuring regulatory compliance, and supporting the organization's mission-driven goals.

What is a Nonprofit Controller?

A Nonprofit Controller is a senior financial professional responsible for managing the accounting, financial reporting, budgeting, and compliance functions within a nonprofit organization. They ensure that all financial practices adhere to regulatory standards and support the organization’s mission. Nonprofit Controllers oversee the preparation of financial statements, manage audits, and often supervise accounting staff. Their work helps maintain transparency and accountability in the organization’s use of funds.

What Does a Nonprofit Controller Do?

A nonprofit controller manages accounting operations for a charitable organization. In this career, you oversee the collection of data and information for use in financial statement reports. You supervise budget planning. You coordinate both internal and external audit processes and make operational adjustments based on the results of those audits. As a controller, you have hiring and training responsibilities in addition to your operational management duties. You select new employees and make sure they receive proper training, and you ensure that your employees account for all necessary information that you use for reporting and financial summaries for donors and regulatory authorities.

What is the difference between Nonprofit Controller vs Nonprofit Accountant?

AspectNonprofit ControllerNonprofit Accountant
CredentialsCPA or equivalent, financial management experienceAccounting degree or certification, entry to mid-level experience
Work EnvironmentOversees financial operations, manages staff, strategic planningHandles day-to-day bookkeeping, reconciliations, and reporting
Employer & Industry UsageNonprofit organizations, foundations, charitiesNonprofits, small organizations, community groups
Search & Comparison IntentHigher-level financial management rolesEntry to mid-level accounting roles

The Nonprofit Controller typically holds a CPA and manages the organization's financial strategy, staff, and compliance. In contrast, a Nonprofit Accountant focuses on routine bookkeeping and financial reporting. While both roles require accounting skills, the Controller's position is more strategic and supervisory, making it suitable for those with more experience and credentials.

More about Nonprofit Controller jobs
What are the most commonly searched types of Nonprofit Controller jobs in Indiana? The most popular types of Nonprofit Controller jobs in Indiana are:
What are popular job titles related to Nonprofit Controller jobs in Indiana? For Nonprofit Controller jobs in Indiana, the most frequently searched job titles are:
What job categories do people searching Nonprofit Controller jobs in Indiana look for? The top searched job categories for Nonprofit Controller jobs in Indiana are:
What cities in Indiana are hiring for Nonprofit Controller jobs? Cities in Indiana with the most Nonprofit Controller job openings:
Nonprofit Controller jobs near you
Infographic showing various Nonprofit Controller job openings in Indiana as of July 2026, with employment types broken down into 92% Full Time, 5% Part Time, 1% Temporary, and 2% Contract. Highlights an 86% Physical, 4% Hybrid, and 10% Remote job distribution.
Controller (Non-Profit)

Controller (Non-Profit)

CFS

Indianapolis, IN • Hybrid

$95K - $120K/yr

Full-time

Posted 14 days ago

Job description

Controller (Non‑Profit)

Indianapolis, IN
Hybrid schedule (up to 2 days work from home)
$95,000 – $120,000 base salary (flexible based on experience and nonprofit complexity)

A mission‑driven organization in the Indianapolis area is seeking a Controller to lead accounting operations and ensure financial integrity in support of organizational goals. This role is ideal for an experienced accounting professional with nonprofit experience who enjoys blending hands‑on accounting with leadership, oversight, and strategic collaboration.

The Controller will play a key role in financial reporting, compliance, and process improvement while partnering closely with leadership to support transparency and stewardship of funds.

Key Responsibilities
  • Oversee all accounting operations, including general ledger, month‑end close, and financial reporting
  • Prepare and review monthly, quarterly, and annual financial statements
  • Ensure compliance with nonprofit accounting standards, including GAAP and fund accounting
  • Manage budgeting, forecasting, and variance analysis in collaboration with leadership
  • Oversee grant tracking, restricted funds, and donor‑related reporting
  • Coordinate annual audits and serve as the primary point of contact for external auditors
  • Maintain and strengthen internal controls and accounting policies
  • Lead and develop accounting staff; provide guidance, training, and oversight
  • Support process improvements and system efficiencies within the accounting function
Qualifications
  • Bachelor’s degree in Accounting, Finance, or related field (required)
  • 5–10+ years of progressive accounting experience, ideally within a nonprofit organization
  • Strong knowledge of nonprofit accounting, including fund and grant accounting
  • Prior experience in a controller, assistant controller, or accounting manager role
  • Experience managing or mentoring accounting staff
  • Strong understanding of internal controls and audit processes
  • Proficiency with accounting systems and Excel
  • CPA preferred but not required
Compensation & Opportunity
  • Base salary range of $95K–$120K, depending on experience
  • Hybrid work environment with remote flexibility
  • High‑impact leadership role supporting a mission‑driven organization
  • Opportunity to influence financial strategy and operational improvements
  • Stable organization with long‑term growth and visibility

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