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Nonprofit Audit Manager Jobs (NOW HIRING)

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Not for Profit Audit Senior

Braintree, MA

$85K - $100K/yr

This Not-for-Profit Audit Senior role will be based out of our Braintree, MA office. You'll work ... Manage multiple engagements concurrently with various teams to efficiently meet client deadlines

BerryDunn

Audit Manager Not-for-Profit

$105K - $120K/yr

Overview BerryDunn is seeking an Audit Manager join our Not-for-Profit Practice Group and to help lead our engagement service team. You will join a core team tasked with conducting audits, reviews ...

BerryDunn

Audit Manager Not-for-Profit

$105K - $120K/yr

Overview BerryDunn is seeking an Audit Manager join our Not-for-Profit Practice Group and to help lead our engagement service team. You will join a core team tasked with conducting audits, reviews ...

BerryDunn

Audit Manager Not-for-Profit

Manchester, NH · On-site +1

$105K - $120K/yr

Overview BerryDunn is seeking an Audit Manager join our Not-for-Profit Practice Group and to help lead our engagement service team. You will join a core team tasked with conducting audits, reviews ...

Maher Duessel

Audit Manager

Lancaster, PA · On-site

$101K - $132K/yr

Audit Managers have exhibited technical proficiency and the ability to supervise and complete ... Government and non-profit audit experience preferred * CPA strongly preferred * Must have spent at ...

Maher Duessel

Audit Manager

Lancaster, PA · Hybrid

$101K - $132K/yr

Audit Managers have exhibited technical proficiency and the ability to supervise and complete ... Government and non-profit audit experience preferred * CPA strongly preferred * Must have spent at ...

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Nonprofit Audit Manager information

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$61K

$120.2K

$157.5K

How much do nonprofit audit manager jobs pay per year?

As of Aug 15, 2026, the average yearly pay for nonprofit audit manager in the United States is $120,236.00, according to ZipRecruiter salary data. Most workers in this role earn between $104,000.00 and $136,500.00 per year, depending on experience, location, and employer.

What is the difference between Nonprofit Audit Manager vs Nonprofit Auditor?

AspectNonprofit Audit ManagerNonprofit Auditor
CertificationsCPA, CIA often preferredCPA or equivalent certification
Work EnvironmentOversees audit teams, manages audit processesPerforms audit procedures, tests financial statements
ResponsibilitiesLeading audits, planning, reporting, team managementExecuting audit tests, gathering evidence, compliance checks
Industry UsageCommon in nonprofit organizations' finance departmentsFound in audit firms or internal audit teams of nonprofits

The main difference is that a Nonprofit Audit Manager oversees the entire audit process and manages teams, while a Nonprofit Auditor focuses on executing audit procedures. Both roles require similar certifications and work within nonprofit organizations, but the manager has broader responsibilities and leadership duties.

What is a nonprofit audit manager?

Nonprofit Audit Managers are accounting professionals who oversee and conduct audits for nonprofit organizations to ensure compliance with financial regulations, internal controls, and grant requirements. They lead audit teams, review financial statements, and identify areas for process improvement or risk mitigation. Their role is crucial in maintaining transparency and accountability, helping nonprofits meet both regulatory standards and the expectations of donors and stakeholders.

What are the key skills and qualifications needed to thrive as a nonprofit audit manager?

To thrive as a Nonprofit Audit Manager, you need a solid background in accounting or finance, experience with nonprofit regulations, and often a CPA or similar professional certification. Familiarity with accounting software, audit management tools, and financial reporting systems is typically required. Strong leadership, analytical thinking, and effective communication skills set top candidates apart. These competencies are critical for ensuring compliance, maintaining financial integrity, and building trust with stakeholders within the nonprofit sector.

What are some unique challenges nonprofit audit managers face compared to those in the for-profit sector?

Nonprofit Audit Managers often encounter distinct challenges such as navigating complex grant compliance requirements, ensuring proper stewardship of restricted funds, and adapting to frequent changes in nonprofit accounting standards. Unlike for-profit audits, nonprofit audits typically require a deeper understanding of donor reporting and government regulations. Additionally, Nonprofit Audit Managers work closely with diverse stakeholders—including boards, donors, and program managers—to communicate financial findings in a way that supports organizational transparency and mission fulfillment.
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Nonprofit Audit Manager jobs near you
Infographic showing various Nonprofit Audit Manager job openings in the United States as of August 2026, with employment types broken down into 88% Full Time, 11% Part Time, and 1% Contract. Highlights an 85% Physical, 2% Hybrid, and 13% Remote job distribution, with an average salary of $120,236 per year, or $57.8 per hour.

Audit Manager, Government and Not-for-Profit

Doeren Mayhew

Melbourne, FL • On-site

$96K - $126K/yr

Full-time

Re-posted 18 days ago

Job description

Doeren Mayhew is the 36th largest U.S. tax, assurance and advisory firm headquartered in Troy, Michigan with over 25 offices across the country and abroad. Founded in 1932, Doeren Mayhew is positioned for successful future growth. If you want to join a rising firm that is consistently named among the 50 best-managed firms in the nation, this is the firm for you.

Our firm is seeking a Governmental Audit Manager to join our Melbourne or Orlando, FL office. The Audit Manager is responsible for leading client engagements, delivering high-quality service through technical quality control, cost effectiveness, accuracy, and timeliness. The Manager will have the opportunity to serve a diverse client base of Governmental and non-profit organizations.

Responsibilities:

  • Lead the planning, execution, and completion of governmental audit engagements.
  • Lead all phases of an audit, including planning, control analysis and testing, substantive procedures, as well as identifying and assisting clients with issues and reporting.
  • Prepare and review financial statements, workpapers, audit programs, etc.
  • Research and resolve complex accounting and assurance issues.
  • Review and conclude on the validity of analytical review procedures performed by staff.
  • Work closely with clients and associates to develop client and project risk assessments, implementations, and recommendations.
  • Maintain proactive communication with engagement team and clients to manage expectations, deadlines, and deliverables.
  • Serve as a trusted client advisor, demonstrate knowledge of industry trends, identify emerging issues and deliver strategic, value-added solutions.
  • Supervise, coach and mentor Associates and Senior Associates, providing ongoing technical guidance and performance feedback.
  • Train new Associates and interns on firm technology, processes and procedures.
  • Provide technical guidance on complex governmental accounting and auditing matters.
  • Identify opportunities to expand client relationships through cross-selling and additional service offerings.
  • Manage multiple engagements simultaneously while meeting quality standards, budgets and deadlines.

Qualifications:

  • Bachelors degree in accounting required.
  • CPA License required.
  • Minimum 5+ years of current experience in audit practice.
  • Experience leading and performing financial, operational or system audits required.
  • Governmental and/or non-profit audit experience preferred.
  • Ability to demonstrate strong analytical and problem-solving skills.
  • Excellent oral and written communication skills.
  • Strong proficiency in Microsoft Excel and Microsoft Office Suite.
  • ProSystem Engagement experience a plus.
  • Ability to adapt quickly to new technology platforms.
  • Ability to travel up to 15%

Doeren Mayhew is an Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race; color; religion; national origin; sex; age; disability; sexual orientation; gender identity or expression; genetic predisposition or carrier status; veteran, marital, or any other status protected by law.

"Doeren Mayhew" is the brand name under which Doeren Mayhew Assurance and Doeren Mayhew Advisors, LLC and its subsidiary entities provide professional services. Doeren Mayhew Assurance and Doeren Mayhew Advisors, LLC (and its subsidiary entities) practice as an alternative practice structure in accordance with the AICPA Code of Professional Conduct and applicable law, regulations and professional standards. Doeren Mayhew Assurance is a licensed independent CPA firm that provides attest services to its clients, and Doeren Mayhew Advisors, LLC and its subsidiary entities provide tax and business consulting services to their clients. Doeren Mayhew Advisors, LLC and its subsidiary entities are not licensed CPA firms.

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