As a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your ...
As a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your ...
Bioinformatics Engineer, Pipelines
San Francisco, CA · On-site
$150K - $200K/yr
You will architect Nextflow and nf-core style pipelines, implement modality-specific validation and QC layers, and collaborate with the Tabular Data Team and Knowledge Curation Team to ensure ...
Bioinformatics Engineer, Pipelines
San Francisco, CA · On-site
$150K - $200K/yr
You will architect Nextflow and nf-core style pipelines, implement modality-specific validation and QC layers, and collaborate with the Tabular Data Team and Knowledge Curation Team to ensure ...
As a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your ...
Quick apply
As a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your ...
Bioinformatics Engineer, Pipelines
San Francisco, CA · On-site
$150K - $200K/yr
You will architect Nextflow and nf-core style pipelines, implement modality-specific validation and QC layers, and collaborate with the Tabular Data Team and Knowledge Curation Team to ensure ...
Quick apply
Bioinformatics Engineer, Pipelines
San Francisco, CA · On-site
$150K - $200K/yr
You will architect Nextflow and nf-core style pipelines, implement modality-specific validation and QC layers, and collaborate with the Tabular Data Team and Knowledge Curation Team to ensure ...
As a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your ...
As a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your ...
Bioinformatics Engineer
$70 - $80/hr
Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scaling. This position offers $70-$80/hr on W2
Bioinformatics Engineer
$70 - $80/hr
Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scaling. This position offers $70-$80/hr on W2
Own end-to-end Nextflow workflow execution: run launch, configuration, tracking, retries/failures, metadata capture, and auditability on AWS Batch. * Build internal web apps and services that enable ...
Own end-to-end Nextflow workflow execution: run launch, configuration, tracking, retries/failures, metadata capture, and auditability on AWS Batch. * Build internal web apps and services that enable ...
Staff Bioinformatics Engineer
San Diego, CA · On-site +1
Own end-to-end Nextflow workflow execution: run launch, configuration, tracking, retries/failures, metadata capture, and auditability on AWS Batch. * Build internal web apps and services that enable ...
Staff Bioinformatics Engineer
San Diego, CA · On-site +1
Own end-to-end Nextflow workflow execution: run launch, configuration, tracking, retries/failures, metadata capture, and auditability on AWS Batch. * Build internal web apps and services that enable ...
Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scaling. Preferred Qualifications • Deep genome assembly ...
Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scaling. Preferred Qualifications • Deep genome assembly ...
Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scali ng. Preferred Qualificat ions • Deep genome ...
Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scali ng. Preferred Qualificat ions • Deep genome ...
Associate Scientist - Bioinformatics V
Foster City, CA · On-site
$60 - $80.50/hr
Productionize workflows (Nextflow/Snakemake/WDL) with containers (Docker/Singularity) across on prem HPC and AWS;produce clear reports, docs, and release packages. Required Qualifications PhD in ...
Associate Scientist - Bioinformatics V
Foster City, CA · On-site
$60 - $80.50/hr
Productionize workflows (Nextflow/Snakemake/WDL) with containers (Docker/Singularity) across on prem HPC and AWS;produce clear reports, docs, and release packages. Required Qualifications PhD in ...
Build and maintain NGS analysis pipelines (e.g., Nextflow) to support quality control and performance tracking of synthetic biology products. * Leverage Oxford Nanopore Technologies (ONT), Illumina ...
Build and maintain NGS analysis pipelines (e.g., Nextflow) to support quality control and performance tracking of synthetic biology products. * Leverage Oxford Nanopore Technologies (ONT), Illumina ...
Build and maintain NGS analysis pipelines (e.g., Nextflow) to support quality control and performance tracking of synthetic biology products. * Leverage Oxford Nanopore Technologies (ONT), Illumina ...
Build and maintain NGS analysis pipelines (e.g., Nextflow) to support quality control and performance tracking of synthetic biology products. * Leverage Oxford Nanopore Technologies (ONT), Illumina ...
NGS Pipeline Development & Data Science Build and maintain NGS analysis pipelines (e.g., Nextflow) to support quality control and performance tracking of synthetic biology products Leverage Oxford ...
NGS Pipeline Development & Data Science Build and maintain NGS analysis pipelines (e.g., Nextflow) to support quality control and performance tracking of synthetic biology products Leverage Oxford ...
Support and troubleshoot scientific workflow pipelines (Nextflow preferred) * Operate and debug Linux-based production environments * Investigate and resolve complex issues across the entire platform ...
Support and troubleshoot scientific workflow pipelines (Nextflow preferred) * Operate and debug Linux-based production environments * Investigate and resolve complex issues across the entire platform ...
Build reproducible and scalable workflows using Nextflow, Snakemake, or WDL. * Containerize pipelines using Docker and/or Singularity. * Execute large-scale genomics workloads on HPC clusters and AWS ...
Build reproducible and scalable workflows using Nextflow, Snakemake, or WDL. * Containerize pipelines using Docker and/or Singularity. * Execute large-scale genomics workloads on HPC clusters and AWS ...
Data Infrastructure Engineer
Berkeley, CA · On-site
$131K - $172K/yr
Own and extend end-to-end Nextflow pipelines on AWS (Seqera Platform) that process nanopore sequencing output: basecalling (Dorado), amino acid calling, signal alignment, and ML-based amino acid ...
Data Infrastructure Engineer
Berkeley, CA · On-site
$131K - $172K/yr
Own and extend end-to-end Nextflow pipelines on AWS (Seqera Platform) that process nanopore sequencing output: basecalling (Dorado), amino acid calling, signal alignment, and ML-based amino acid ...
Own and extend end-to-end Nextflow pipelines on AWS (Seqera Platform) that process nanopore sequencing output: basecalling (Dorado), amino acid calling, signal alignment, and ML-based amino acid ...
Own and extend end-to-end Nextflow pipelines on AWS (Seqera Platform) that process nanopore sequencing output: basecalling (Dorado), amino acid calling, signal alignment, and ML-based amino acid ...
Practical experience with workflow orchestration (Nextflow, Snakemake, or similar). Solid software engineering habits - reproducible analysis, version control, peer review, and testing. Comfort ...
Practical experience with workflow orchestration (Nextflow, Snakemake, or similar). Solid software engineering habits - reproducible analysis, version control, peer review, and testing. Comfort ...
Proficiency with workflow orchestration frameworks such as Snakemake, Nextflow or Martian * Programming best practices including data analysis reproducibility, version control, design patterns ...
Proficiency with workflow orchestration frameworks such as Snakemake, Nextflow or Martian * Programming best practices including data analysis reproducibility, version control, design patterns ...
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Full-time
Medical, Dental, Vision, Retirement, PTO
Posted 10 days ago
Job description
As a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your contributions will directly impact innovative scientific discoveries and product development. You'll collaborate closely with scientists, engineers, and researchers, contributing your technical expertise to streamline processes, maintain automation, and drive our bioinformatics capabilities forward.
Responsibilities:
- Design, implement, and develop tests and documentation for established robust bioinformatics pipelines.
- Optimize computational workflows for high-performance execution and reproducible data analysis.
- Maintain, monitor, and improve pipeline automation to ensure smooth operational workflows.
- Manage GitHub repositories, oversee version control, and streamline the software release process.
- Develop and manage infrastructure on AWS to ensure scalability, reliability, and efficiency.
- Collaborate with cross-functional teams to integrate bioinformatics solutions.
- Proactively identify opportunities to enhance infrastructure efficiency and security.
Requirements
Qualifications:
- Bachelor's degree or higher in Bioinformatics, Computational Biology, Computer Science, or a related field. with at least 3+ years of working experience out of college.
- Experience with bioinformatics workflow development and optimization, particularly using Nextflow.
- Experience developing software following best practices, including comprehensive testing and clear documentation.
- Proficiency in scripting languages (Python, Bash) and familiarity with container technologies (Docker, Kubernetes).
- Hands-on experience with AWS cloud computing services (EC2, S3, Batch, Lambda).
- Excellent communication and collaborative skills.
Preferred Qualifications:
- Familiarity with CI/CD practices.
- Experience with infrastructure-as-code (Terraform, CloudFormation).
Benefits
- Health Care Plan (Medical, Dental & Vision)
- Retirement Plan (401k, IRA)
- Paid Time Off (Vacation, Sick & Public Holidays)
About Accuragen
Sourced by ZipRecruiter
Industry
Biotechnology research and development
Company size
11 - 50 Employees
Headquarters location
Menlo Park, CA, US
Year founded
2013