Computational Biologist
Palo Alto, CA · On-site
Experience building and running reproducible workflows using tools such as Snakemake, Nextflow, or equivalent; familiarity with version control (Git) and best practices for collaborative code ...
Computational Biologist
Palo Alto, CA · On-site
Experience building and running reproducible workflows using tools such as Snakemake, Nextflow, or equivalent; familiarity with version control (Git) and best practices for collaborative code ...
Senior Bioinformaticist - Information Services (Hybrid Role)
San Diego, CA · Hybrid
$52.95 - $72.81/hr
... g., Nextflow, Snakemake, WDL, Cromwell, orsimilar frameworks) PREFERRED QUALIFICATIONS: Ph.D Experience in CNV and SV detection tools and interpretation of complex genomic variation. Previous ...
Senior Bioinformaticist - Information Services (Hybrid Role)
San Diego, CA · Hybrid
$52.95 - $72.81/hr
... g., Nextflow, Snakemake, WDL, Cromwell, orsimilar frameworks) PREFERRED QUALIFICATIONS: Ph.D Experience in CNV and SV detection tools and interpretation of complex genomic variation. Previous ...
Bioinformatics Scientist
$170K - $190K/yr
Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:
Bioinformatics Scientist
$170K - $190K/yr
Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required. * Sequencing Data:
Computational Scientist
South San Francisco, CA · On-site
$65.18/hr
... nextflow or snakemake Practical experience with working on HPC systems / SLURM Pay range: up to $65.18 per hour Only candidates available and ready to work directly as Aptask Global Workforce (AGW ...
Computational Scientist
South San Francisco, CA · On-site
$65.18/hr
... nextflow or snakemake Practical experience with working on HPC systems / SLURM Pay range: up to $65.18 per hour Only candidates available and ready to work directly as Aptask Global Workforce (AGW ...
Establish and implement modern workflow management systems (Snakemake, Nextflow) and reproducible research practices. * External collaboration: Cultivate and manage academic and industry ...
Establish and implement modern workflow management systems (Snakemake, Nextflow) and reproducible research practices. * External collaboration: Cultivate and manage academic and industry ...
Bioinformatics Scientist
South San Francisco, CA · On-site
$170K - $190K/yr
Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required.Sequencing Data:
Quick apply
Bioinformatics Scientist
South San Francisco, CA · On-site
$170K - $190K/yr
Significant, hands-on experience with Nextflow and Docker is critical for pipeline development. Proficiency with standard bioinformatics tooling (Python, Linux, Git) is required.Sequencing Data:
Workflow orchestration (Prefect, Airflow, Nextflow, WDL), CI/CD, and Linux/bash scripting. Strong learning agility--willingness to step outside comfort zone and adopt new technologies to get the job ...
Workflow orchestration (Prefect, Airflow, Nextflow, WDL), CI/CD, and Linux/bash scripting. Strong learning agility--willingness to step outside comfort zone and adopt new technologies to get the job ...
... Nextflow. • Proven expertise in clinical biomarker analysis, with a particular focus on Omics biomarker data for hematology, oncology and immunology-related drug discovery and development. • ...
... Nextflow. • Proven expertise in clinical biomarker analysis, with a particular focus on Omics biomarker data for hematology, oncology and immunology-related drug discovery and development. • ...
Bioinformatics Software Engineer
$130K - $160K/yr
... Nextflow, Snakemake, WDL, CWL). * Proven experience optimizing and scaling bioinformatics pipelines for performance and reliability. * Proficient in Python, with bonus points for experience in other ...
Quick apply
Bioinformatics Software Engineer
$130K - $160K/yr
... Nextflow, Snakemake, WDL, CWL). * Proven experience optimizing and scaling bioinformatics pipelines for performance and reliability. * Proficient in Python, with bonus points for experience in other ...
Workflow orchestration (Prefect, Airflow, Nextflow, WDL), CI/CD, and Linux/bash scripting. Strong learning agility--willingness to step outside comfort zone and adopt new technologies to get the job ...
Workflow orchestration (Prefect, Airflow, Nextflow, WDL), CI/CD, and Linux/bash scripting. Strong learning agility--willingness to step outside comfort zone and adopt new technologies to get the job ...
Computational Biologist
San Francisco, CA · On-site
$125K - $185K/yr
Strong programming skills in Python and/or R, with experience building reproducible analytical workflows (i.e., Snakemake, Nextflow, Git) * Proven ability to move quickly and deliver rigorous results ...
Computational Biologist
San Francisco, CA · On-site
$125K - $185K/yr
Strong programming skills in Python and/or R, with experience building reproducible analytical workflows (i.e., Snakemake, Nextflow, Git) * Proven ability to move quickly and deliver rigorous results ...
Experience with Nextflow is a plus Location, Compensation, and Benefits: * Location: Hybrid role, 2 days onsite at our Menlo Park, CA office. * Compensation: $75.00 to $140.00 an hour based on ...
Quick apply
Experience with Nextflow is a plus Location, Compensation, and Benefits: * Location: Hybrid role, 2 days onsite at our Menlo Park, CA office. * Compensation: $75.00 to $140.00 an hour based on ...
Workflow orchestration (Prefect, Airflow, Nextflow, WDL), CI/CD, and Linux/bash scripting. * Strong learning agility-willingness to step outside comfort zone and adopt new technologies to get the job ...
Workflow orchestration (Prefect, Airflow, Nextflow, WDL), CI/CD, and Linux/bash scripting. * Strong learning agility-willingness to step outside comfort zone and adopt new technologies to get the job ...
Workflow orchestration (Prefect, Airflow, Nextflow, WDL), CI/CD, and Linux/bash scripting. * Strong learning agility-willingness to step outside comfort zone and adopt new technologies to get the job ...
Workflow orchestration (Prefect, Airflow, Nextflow, WDL), CI/CD, and Linux/bash scripting. * Strong learning agility-willingness to step outside comfort zone and adopt new technologies to get the job ...
Establish and implement modern workflow management systems (Snakemake, Nextflow) and reproducible research practices. * External collaboration: Cultivate and manage academic and industry ...
Establish and implement modern workflow management systems (Snakemake, Nextflow) and reproducible research practices. * External collaboration: Cultivate and manage academic and industry ...
Bioinformatics Scientist
Redwood City, CA · On-site
$115K - $175K/yr
Expertise with cloud computing environments (AWS or GCP), container solutions (Docker), and common workflow management tools (Nextflow, Snakemake) * Proven scientific reputation as demonstrated by ...
Bioinformatics Scientist
Redwood City, CA · On-site
$115K - $175K/yr
Expertise with cloud computing environments (AWS or GCP), container solutions (Docker), and common workflow management tools (Nextflow, Snakemake) * Proven scientific reputation as demonstrated by ...
Architect end-to-end analysis workflows in Python and/or R using modern workflow orchestration (Nextflow, Snakemake, or equivalent) that are reproducible, version-controlled, and designed to run at ...
Architect end-to-end analysis workflows in Python and/or R using modern workflow orchestration (Nextflow, Snakemake, or equivalent) that are reproducible, version-controlled, and designed to run at ...
Familiarity with workflow frameworks such as Nextflow, Snakemake, or similar tools. * Experience with container technologies such as Docker is helpful. * Exposure to cloud computing platforms such as ...
Familiarity with workflow frameworks such as Nextflow, Snakemake, or similar tools. * Experience with container technologies such as Docker is helpful. * Exposure to cloud computing platforms such as ...
Data Engineer, Scientific Data Ingestion
San Francisco, CA · On-site
$150K - $200K/yr
Nextflow, Prefect, Airflow, Dagster), or building pipeline abstractions. * Experience with cloud infrastructure and data storage (AWS S3, data lakes/warehouses, database schemas) to support multi ...
Quick apply
Data Engineer, Scientific Data Ingestion
San Francisco, CA · On-site
$150K - $200K/yr
Nextflow, Prefect, Airflow, Dagster), or building pipeline abstractions. * Experience with cloud infrastructure and data storage (AWS S3, data lakes/warehouses, database schemas) to support multi ...
Lead Bioinformatics Scientist, NGS
Emeryville, CA · On-site +1
$160K - $230K/yr
Expertise with workflow orchestration tools (Nextflow, Snakemake) and cloud environments (GCP, AWS) * Experience with containerization (Docker, Kubernetes) and scalable compute infrastructure * Deep ...
Lead Bioinformatics Scientist, NGS
Emeryville, CA · On-site +1
$160K - $230K/yr
Expertise with workflow orchestration tools (Nextflow, Snakemake) and cloud environments (GCP, AWS) * Experience with containerization (Docker, Kubernetes) and scalable compute infrastructure * Deep ...
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Full-time
Re-posted 15 days ago
Job description
About Transcripta Bio
Transcripta Bio is a preclinical-stage AI drug discovery company pioneering a patient-first approach to therapeutics. Headquartered in Palo Alto, CA, we have built a proprietary closed-loop discovery engine - comprising our Disease Signature Atlas, Drug-Gene Atlas, and Conductor AI platform - that integrates single-cell patient transcriptomics, causal human genetics, and pre-validated chemistry to identify and advance drug candidates with a structural edge over conventional approaches.
WHAT YOU'LL DO
WHAT YOU'LL BRING
NICE TO HAVE
Transcripta Bio is a preclinical-stage AI drug discovery company pioneering a patient-first approach to therapeutics. Headquartered in Palo Alto, CA, we have built a proprietary closed-loop discovery engine - comprising our Disease Signature Atlas, Drug-Gene Atlas, and Conductor AI platform - that integrates single-cell patient transcriptomics, causal human genetics, and pre-validated chemistry to identify and advance drug candidates with a structural edge over conventional approaches.
WHAT YOU'LL DO
- Develop, maintain, and optimize reproducible bioinformatics pipelines for processing, QC, and analysis of high-throughput datasets, including bulk RNA-seq, single-cell RNA-seq, and high-content imaging data.
- Analyze data from drug perturbation screens to identify transcriptomic signatures, compound-gene associations, and patterns of drug response across disease-relevant cell models.
- Integrate data across multiple experimental modalities (transcriptomics, imaging, protein measurements) to build a coherent picture of biology and prioritize therapeutic hypotheses.
- Partner with wet lab scientists to help design experiments, define data standards, troubleshoot data quality issues, and ensure clean handoffs between experimental and computational workflows.
- Contribute to the curation and expansion of the Drug-Gene Atlas: ensure that data inputs are well characterized, analysis methods are calibrated, and outputs are interpretable and reliable.
- Communicate findings clearly through reports, visualizations, and presentations to both computational and non-computational colleagues.
- Stay current with advances in transcriptomics, single-cell methods, and computational biology; evaluate and adopt new tools and approaches where they add value.
- Contribute to code review, documentation, and best practices as the team grows.
WHAT YOU'LL BRING
- PhD in Bioinformatics, Computational Biology, Genomics, or a related field with 3+ years of relevant experience in industry.
- Extensive hands-on experience processing and analyzing bulk and/or single-cell RNA-seq data, from raw reads through QC, normalization, dimensionality reduction, clustering, and differential expression.
- Experience in relevant scientific packages (e.g., scanpy, pandas, numpy, DESeq2, ggplot2) and comfort working in a Linux/command-line environment. Strong programming proficiency in Python and/or R is a plus
- Experience building and running reproducible workflows using tools such as Snakemake, Nextflow, or equivalent; familiarity with version control (Git) and best practices for collaborative code development.
- Exposure to high-throughput or perturbational screening datasets (chemical, genetic, or combined) is highly desirable.
- A biologically grounded mindset: you approach data with mechanistic questions in mind, not just statistical outputs.
NICE TO HAVE
- Experience analyzing data from functional genomics assays (e.g., ATAC-seq, ChIP-seq, perturb-seq, or pooled CRISPR screens).
- Familiarity with spatial transcriptomics or multimodal data integration approaches.
- Experience working with or alongside ML/AI teams; familiarity with applying machine learning methods to biological data.
- Background in rare genetic disease, neurodegeneration, or other genetically defined disease areas.
- Experience in cloud-based compute environments (AWS, GCP, or equivalent)