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Lab Automation Manager Jobs (NOW HIRING)

Biopharma Careers

Lab Automation Engineer

Boston, MA · On-site

$85K - $128K/yr

The Lab Automation Engineer will be a part of a team dedicated to designing, implementing, and ... manager, or contact Talent Acquisition at ApplicationAssistance@vrtx.com #J-18808-Ljbffr

Natera

Senior Lab Automation Engineer

Austin, TX · On-site

$103K - $135K/yr

The Senior Lab Automation Engineer is an experienced engineer with expertise in the development and ... Strong project management skills, organizational skills, and written and verbal communication ...

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Lab Automation Manager information

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$116.6K

$169.5K

How much do lab automation manager jobs pay per year?

As of Sep 13, 2026, the average yearly pay for lab automation manager in the United States is $116,607.00, according to ZipRecruiter salary data. Most workers in this role earn between $91,500.00 and $139,000.00 per year, depending on experience, location, and employer.

What is a lab automation manager?

A Lab Automation Manager is a professional responsible for overseeing the implementation, maintenance, and optimization of automated systems in laboratory environments. They ensure that laboratory processes such as sample handling, data analysis, and equipment operation are efficiently automated to improve accuracy and productivity. Their role often includes managing teams, coordinating with IT and scientific staff, and evaluating new technologies to streamline lab workflows. Lab Automation Managers play a crucial part in modern laboratories by integrating robotics, software, and hardware to enable high-throughput and reproducible scientific results.

What are some common challenges faced by a lab automation manager, and how can they be addressed?

A Lab Automation Manager often encounters challenges such as integrating new automation technologies with existing laboratory workflows and ensuring reliable data transfer between instruments and software systems. Additionally, managing cross-functional teams and training staff to adapt to automated processes can be complex. These challenges can be addressed by maintaining clear communication with stakeholders, staying updated on the latest automation trends, and providing ongoing training and support to team members to ensure a smooth transition and sustained productivity.

What are the key skills and qualifications needed to thrive as a lab automation manager, and why are they important?

To thrive as a Lab Automation Manager, you need expertise in laboratory science, automation technologies, and project management, typically supported by a degree in science or engineering and relevant industry experience. Familiarity with laboratory information management systems (LIMS), robotics, and programming languages such as Python or VBA, as well as certifications like Six Sigma or PMP, are commonly required. Strong leadership, problem-solving, and communication skills distinguish top performers in this role. These capabilities are crucial for streamlining lab operations, ensuring data integrity, and driving innovation in laboratory processes.

What cities are hiring for Lab Automation Manager jobs?

Cities with the most Lab Automation Manager job openings:

What states have the most Lab Automation Manager jobs?

States with the most job openings for Lab Automation Manager jobs include:

What are popular job titles related to Lab Automation Manager jobs?

For Lab Automation Manager jobs, the most frequently searched job titles are:

Infographic showing various Lab Automation Manager job openings in the United States as of August 2026, with employment types broken down into 88% Full Time, 11% Part Time, and 1% Contract. Highlights an 80% Physical, 2% Hybrid, and 18% Remote job distribution, with an average salary of $116,607 per year, or $56.1 per hour.

Sr. Principal or Engineering Advisor - Agentic Lab Automation Integration

South San Francisco, CA • On-site

Scorpion Therapeutics
51 - 200 employees
Learn more about Scorpion Therapeuticsexternal

$87K - $222K/yr

Other

Medical, Dental, Vision, Life, Retirement, PTO

Posted 14 days ago

Job description

Position Summary
  • Engineer integrations between agentic AI and physical lab systems, connecting robotic platforms, analytical instruments, and data pipelines.
  • Design agent workflows to reason over experimental data, trigger automated actions, and surface insights to scientists.
  • Prototype rapidly, productionize what works, and collaborate with chemists, biologists, and automation engineers.
Research & Innovation
  • Build multi-agent systems with orchestration, state management, error recovery, and tool integration.
  • Prototype and iterate on agent planning, memory systems, and human-in-the-loop patterns.
  • Interface agent architectures with lab automation platforms (Hamilton, Tecan, Opentrons) for closed-loop execution.
Solution Deployment
  • Transition prototypes into reliable lab operations with automation engineers and scientists.
  • Deploy and maintain containerized services (Docker, Kubernetes) using GitOps and CI/CD.
  • Integrate orchestration frameworks (e.g., Argo on Kubernetes) with laboratory control systems.
External Engagement
  • Publish, give talks, review papers, and scout emerging trends in AI@Lilly/external community.
  • Evaluate vendors, open-source projects, and academic collaborations.
Basic Qualifications
  • PhD (or MS + 2 yrs / BS + 5 yrs) in Chemical/Mechanical Engineering, Robotics, Computer Engineering, or related field; demonstrated wet-lab automation.
  • Experience with lab automation systems and LIMS engineering.
  • Experience integrating software/AI with lab automation (liquid handlers, analytical instruments, robotic workflows).
  • Strong Docker + Kubernetes production orchestration.
  • Scalable production Python apps (e.g., Redis, FastAPI, Flask/Streamlit, pytest).
Preferred
  • LLM post-training/fine-tuning/RLHF; AI integrated with lab automation.
  • Ability to build the translation layer from planning logic to instrument control.
  • Research experience with ML/NLP publications (e.g., NeurIPS/ICML/ICLR/ACL).
Compensation/Benefits
  • Anticipated wage: $87,000–$222,200; eligible for company bonus and comprehensive benefits (401(k), medical/dental/vision, vacation, life insurance, time off/leave, well-being programs).
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