1

Downstream Process Jobs in Indiana (NOW HIRING)

Approve design changes that impact downstream processes, performance, or compliance. Quality & controls * Define and enforce Definition of Ready / Definition of Done for conversion objects. * Set and ...

Machine Operator

Evansville, IN · On-site

$16.25 - $19.25/hr

Operate extruder, corrugation and downstream equipment in accordance with daily production tickets and OEM/Miller quality standards. * Evaluate root cause of process or product issues in coordination ...

... downstream commercial support, field enablement, or customer-facing HEMA roles * Strong understanding of US healthcare systems, payer dynamics, and health system decision-making processes

Mechanical Engineers develop solutions and implement projects that improve the process and ... Communicate with upstream and downstream operations and non-Cleveland-Cliffs contractors to ...

... process improvement ideas to workforce that promote reliability, quality, and productivity. * Communicate with upstream and downstream operations and non-Cleveland-Cliffs Steel contractors to ...

next page

Showing results 1-20

Downstream Process information

See Indiana salary details

$12

$23

$33

How much do downstream process jobs pay per hour?

As of May 31, 2026, the average hourly pay for downstream process in Indiana is $23.48, according to ZipRecruiter salary data. Most workers in this role earn between $18.75 and $26.78 per hour, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a Downstream Process Engineer, and why are they important?

To thrive as a Downstream Process Engineer, you need a solid background in chemical or biochemical engineering, knowledge of purification techniques, and typically a relevant degree. Familiarity with process control systems, chromatography, filtration technologies, and GMP compliance, as well as certifications like Six Sigma, are commonly required. Strong problem-solving, teamwork, and communication skills help you excel in cross-functional teams and address complex production challenges. These skills ensure efficient, high-quality product recovery and compliance with industry standards in biomanufacturing environments.

What are some common challenges faced by professionals working in downstream process roles within biomanufacturing?

Professionals in downstream process roles often encounter challenges such as optimizing purification steps to maximize yield and product purity while minimizing costs and processing time. They must also troubleshoot issues related to equipment performance, scalability, and regulatory compliance, especially when transitioning from lab-scale to large-scale production. Collaboration with upstream teams, quality assurance, and engineering is critical to address these challenges and ensure a smooth workflow. Staying current with technological advances and regulatory requirements also plays a significant role in day-to-day success.

What is a Downstream Process in biotechnology?

A Downstream Process refers to the series of steps involved in the purification and recovery of biological products, such as proteins, enzymes, or antibodies, after they have been produced by microorganisms or cells during fermentation or cell culture. It typically includes cell separation, product isolation, purification, and polishing to achieve the desired product quality and purity. Downstream processing is crucial for ensuring that biopharmaceutical products meet regulatory and safety standards before they reach the market.

What is the difference between Downstream Process vs Upstream Process?

AspectDownstream ProcessUpstream Process
PurposePurifies and isolates the target product from the mixtureProduces the initial product, such as cell culture or fermentation
ActivitiesFiltration, chromatography, centrifugation, purificationCell growth, fermentation, media preparation
Work EnvironmentLaboratories, bioprocessing facilitiesBioreactors, fermentation tanks, labs
Required SkillsBioprocessing techniques, chromatography, filtrationMicrobiology, cell culture, fermentation technology

Downstream Process focuses on purifying the product, while Upstream Process involves producing the raw material. Both are essential steps in biopharmaceutical manufacturing, often working sequentially to ensure high-quality product output.

What cities in Indiana are hiring for Downstream Process jobs? Cities in Indiana with the most Downstream Process job openings:
Infographic showing various Downstream Process job openings in Indiana as of May 2026, with employment types broken down into 2% Internship, 90% Full Time, 2% Temporary, 4% Contract, and 2% Nights. Highlights an 97% In-person, and 3% Remote job distribution, with an average salary of $48,833 per year, or $23.5 per hour.
Director - Oligonucleotide Analytical Chemistry

Director - Oligonucleotide Analytical Chemistry

Lilly

Indianapolis, IN

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 3 days ago


Eli Lilly and Company rating

8.8

Company rating: 8.8 out of 10

Based on 62 frontline employees who took The Breakroom Quiz

11th of 70 rated pharmaceutical


Job description

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities through philanthropy and volunteerism. We give our best effort to our work, and we put people first. We're looking for people who are determined to make life better for people around the world.

In this role, we are seeking an experienced scientific leader that will have responsibility for ensuring the technical integrity, compliance, and business administration of a Lilly team responsible for analytical characterization and development of oligonucleotides, antibody-oligonucleotide conjugates and peptide-oligonucleotide conjugates. The Analytical team consists of high-level scientists focused on the implementation of new technologies and analytical process improvements. This position involves working cross-functionally within the Indianapolis site and with our site in Boston to develop strategic functional capabilities and ensure appropriate capacity, capabilities and business processes are developed, implemented and sustained to deliver the required information to the project teams. The scientist will be an external leader in this technical area and set the overall strategy for the Lilly Genetic Medicine analytical team across research sites and in cooperation with our cross-functional partners.

Responsibilities:

  • Provide technical leadership for Lilly Genetic Medicine (LGM) analytical activitiesto be driven within the organization including analytical characterization, biophysical characterization, downstream processing method development, open-access QC workflows,analytical IT and analytical instrumentation and operation readiness. Ensure methods are technically sound, well developed, and fit-for-purpose.
  • Partner with the Early Phase Development team and the drug discovery team to define and deliver appropriate analytical data packages to support molecules advancing from discovery to development
  • Mentor and develop scientific team. Ensure continued technical and professional growth of group members, encourage efforts towards excellence and knowledge sharing.
  • Plan and manage short-term and long-term analytical investments to support the organization. Develop and/or review technical agendas and timelines for project work. Recommend resource allocation to accomplish projects according to plans, communicate with LGM leadership on progress and propose changes in timeline, objectives, or direction.
  • Demonstrate high learning agility and the ability to understand and exploit effective scientific concepts and methods across multiple novel drug modalities, including oligonucleotides, antibody-oligonucleotide conjugates and peptide-oligonucleotide conjugates
  • Manage collaborative partnerships with external and internal analytical vendors to supplement LGM analytical resources

Basic Qualifications:

  • Ph.D. in analytical chemistry, bioanalytical chemistry, or a related field with 7+ years of experience in the biopharmaceutical sector following graduation
  • 2+ years of experience in people management and analytical laboratory operations

Additional Skills/Preferences:

  • Demonstrated expertise leading analytical efforts in pharmaceutical product discovery and/or development with proven skills developing and validating analytical methods
  • Experience with technical transfer of analytical methods from discovery to development organizations
  • Demonstrated expertise in leading separation sciences for oligonucleotides, including but not limited to RP, HILIC, HIC, IEX, SEC, and CE
  • Demonstrated experience in scale-up sample preparation and analytical characterization of oligonucleotides, antibody-oligonucleotide conjugates and/or peptide-oligonucleotide conjugates
  • Solid understanding of chemical synthesis, purification and formulation requirements of drug candidate molecules
  • Proficiency in biophysical and analytical characterization techniques, including but not limited to light scattering methods, chromatography, mass spectrometry, backgrounded membrane imaging, and other molecular-level characterization tools.

Additional Information:

  • Travel: 15 to 20%
  • Position Location: On-site, Indianapolis, IN; Lilly Corporate Center (LCC)

Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form (https://careers.lilly.com/us/en/workplace-accommodation) for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.

Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.


Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia Network, Black Employees at Lilly, Chinese Culture Network, Japanese International Leadership Network (JILN), Lilly India Network, Organization of Latinx at Lilly (OLA), PRIDE (LGBTQ+ Allies), Veterans Leadership Network (VLN), Women's Initiative for Leading at Lilly (WILL), enAble (for people with disabilities). Learn more about all of our groups.

Actual compensation will depend on a candidate's education, experience, skills, and geographic location. The anticipated wage for this position is

$148,500 - $257,400

Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly's compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.

#WeAreLilly


What Eli Lilly and Company employees say

Pay

Benefits

Hours and flexibility

Workplace

Get the full story on Breakroom


Eli Lilly logo

About Eli Lilly

Sourced by ZipRecruiter

Eli Lilly, based in Indianapolis, IN, US, is one of the pioneers in the pharmaceutical industry with a rich history dating back to 1876. This global pharmaceutical company focuses on discovering, developing, manufacturing and selling pharmaceutical products in approximately 120 countries. The company's product categories include endocrinology, oncology, cardiovascular, neuroscience, and immunology. Having invested over $9 billion in research and development in the past decade, Eli Lilly is also committed to creating high-quality medicines that meet real needs. As a recipient of several awards and recognitions, Eli Lilly is known for its focus on life-saving research and drug development. Their mission is to make medicines that help people live longer, healthier, and more active lives.

Industry

Pharmaceutical product wholesalers

Company size

10,000+ Employees

Headquarters location

Indianapolis, IN, US

Year founded

1876