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Deduction Analyst Jobs in Boston, MA (NOW HIRING)

Analyze payroll impacts related to benefits programs, including disability, paid family leave, taxable wages, deductions, imputed income, and year-end reporting. * Identify trends, risks, and ...

New

Compensation and Benefits Analyst

Weymouth, MA · On-site

$73K - $91K/yr

As a Compensation and Benefits Analyst you must have will have a strong eagerness to learn ... Managing payroll deductions and managing wellness programs to minimize health insurance costs.

Compensation and Benefits Analyst

Weymouth, MA · On-site

$73K - $91K/yr

As a Compensation and Benefits Analyst you must have will have a strong eagerness to learn ... Managing payroll deductions and managing wellness programs to minimize health insurance costs.

Staff Accountant

Newton, MA · Hybrid

$65K - $75K/yr

Reconcile bottle deposits and review broker commissions on a monthly basis Cross-Functional Collaboration Partner with Sales and FP&A to validate promotional deductions against approved trade plans ...

Staff Accountant

Newton, MA · On-site

$60K - $79K/yr

... A to validate promotional deductions against approved trade plans, customer agreements, and deal sheets. • Coordinate with Supply Chain and Customer Service to investigate and resolve freight ...

Staff Accountant

Newton, MA · On-site

$60K - $79K/yr

Partner with Sales and FP&A to validate promotional deductions against approved trade plans, customer agreements, and deal sheets. * Coordinate with Supply Chain and Customer Service to investigate ...

Reconcile payroll, payroll taxes, deductions, and general ledger accounts. * Prepare payroll ... Produce payroll reports and provide management with payroll-related analysis and reporting.

Equity Operations Analyst

Boston, MA · On-site

$85 - $105/hr

... deductions/rates, and supporting annual compliance and audit testing. • Responsible for the ... Excellent analytical skills • Strong organization, planning and project management skills ...

Senior Workday HRIS Analyst

Burlington, MA · On-site

$98K - $125K/yr

Configure and maintain payroll business processes, earnings, deductions, taxes, payroll inputs, pay ... Reporting, Analytics & Audits * Ensure system configurations support audit readiness and ...

Showing results 21-40

Deduction Analyst information

See Boston, MA salary details

$35.8K

$82.9K

$134.7K

How much do deduction analyst jobs pay per year?

As of Sep 5, 2026, the average yearly pay for deduction analyst in Boston, MA is $82,859.00, according to ZipRecruiter salary data. Most workers in this role earn between $62,500.00 and $97,800.00 per year, depending on experience, location, and employer.

What is a deduction analyst?

A Deduction Analyst is responsible for investigating and resolving payment discrepancies between a company and its customers. They analyze deductions taken on customer invoices, determine their validity, and work with internal teams or clients to dispute unauthorized deductions. Their role involves reviewing financial data, communicating with accounts receivable, and ensuring accurate revenue reconciliation. Strong analytical skills and attention to detail are essential for this role.

What are the key skills and qualifications needed to thrive as a deduction analyst?

To thrive as a Deduction Analyst, you need strong analytical skills, attention to detail, and experience in accounting or finance, often supported by a relevant bachelor's degree. Familiarity with ERP systems (such as SAP or Oracle), Excel, and data management tools is typically required, and some employers may prefer certification in accounting or financial analysis. Effective communication, problem-solving, and time management are standout soft skills for resolving complex deductions efficiently. These skills are essential for accurately identifying deduction reasons, reducing financial discrepancies, and maintaining positive client and vendor relationships.

What are some typical challenges a deduction analyst faces, and how can they be effectively managed?

Deduction Analysts often encounter challenges such as identifying the root cause of complex deductions, reconciling large volumes of data, and meeting tight deadlines for resolving disputes. Strong analytical skills, effective organization, and proactive communication with customers, sales teams, and internal departments can help overcome these obstacles. Staying up to date with company policies and utilizing automated tracking or reporting systems also streamlines the resolution process. By anticipating common issues and maintaining clear documentation, Deduction Analysts can minimize revenue loss and contribute positively to the accounts receivable function.

What are the most commonly searched types of Deduction Analyst jobs in Boston, MA?

The most popular types of Deduction Analyst jobs in Boston, MA are:

What are popular job titles related to Deduction Analyst jobs in Boston, MA?

For Deduction Analyst jobs in Boston, MA, the most frequently searched job titles are:

What cities near Boston, MA are hiring for Deduction Analyst jobs?

Cities near Boston, MA with the most Deduction Analyst job openings:

Infographic showing various Deduction Analyst job openings in Boston, MA as of August 2026, with employment types broken down into 87% Full Time, 8% Part Time, and 5% Contract. Highlights an 84% Physical, 6% Hybrid, and 10% Remote job distribution, with an average salary of $82,859 per year, or $39.8 per hour.

Payroll Analyst

Manulife

Boston, MA • On-site

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 3 days ago

New


Job description

We are seeking a highly skilled Payroll Analyst to support complex U.S. payroll operations with sound judgment, technical payroll expertise, and a continuous improvement mindset. Our North American Payroll team supports approximately 5,500 U.S. employees across all 50 states and five Employer Identification Numbers (EINs).

This role is responsible for delivering accurate, compliant payroll while reducing risk, strengthening controls, improving processes, and enhancing the employee experience.

The successful candidate will be curious, analytical, and comfortable partnering across Payroll, HR, Finance, Benefits, Tax, Technology, vendors, and business stakeholders to solve problems, support payroll-related projects and implementations, influence change, and drive meaningful business impact

The best Payroll Analysts do more than process payroll. They improve it by preventing errors, solving root causes, improving controls, reducing manual work, and delivering measurable results.


Position Responsibilities:

  • Payroll Operations, Compliance & Analysis
  • Independently process, audit, and validate high-volume payroll accurately and on time across multiple jurisdictions, legal entities, pay groups, and payroll cycles.

  • Handle escalated payroll support cases, including complex employee, manager, HR, and vendor inquiries requiring research, judgment, and timely resolution.

  • Lead complex payroll activities, including equity compensation, executive payroll, deferred compensation, board payments, mobile employee payroll, relocation, annual compensation, bonus cycles, taxable benefits, and special tax treatment items.

  • Lead quarterly and year-end activities, including reconciliations, audits, amended filings, adjustments, taxable benefit reporting, and employee reporting requirements.

  • Research and resolve complex payroll, tax, and benefits issues while applying federal, state, local, and other regulatory requirements.

  • Investigate payroll discrepancies, determine root causes, and recommend sustainable solutions.

  • Testing, Controls & Continuous Improvement
  • Support payroll system, configuration, integration, and process changes through structured end-to-end testing and validation.

  • Develop test scripts, scenarios, and validation plans, including regression, integration, parallel, negative, and exception testing.

  • Anticipate edge cases and confirm that results align with business requirements.

  • Document testing outcomes, defects, risks, and recommendations.

  • Identify opportunities to simplify, automate, standardize, and strengthen payroll processes and controls.

  • Create and maintain process documentation, job aids, and operating procedures while contributing to projects that reduce risk and support scalable payroll operations.

  • Technology & AI Enablement
  • Use Workday, ADP GlobalView, SAP-based payroll tools, and related technologies to support payroll delivery, integrations, and issue resolution.

  • Support and troubleshoot inbound and outbound payroll integrations, including retirement plans, deferred compensation, benefits, withholding, garnishments, tax filings, and workers' compensation reporting.

  • Use approved AI, automation, reporting, and productivity tools to improve research, reconciliations, documentation, testing, analysis, process mapping, and communications.

  • Identify practical technology and workflow improvements while protecting confidential data, validating outputs, maintaining human review, and ensuring payroll compliance.

  • Partnership & Team Impact
  • Build strong partnerships with Benefits, Pension, Compensation, Finance, Tax, Technology, and external vendors.

  • Communicate complex payroll concepts in clear, business-friendly language.

  • Share knowledge, support teammates, and contribute to a culture of learning and continuous improvement.

  • Influence positive change through expertise, credibility, and collaboration.

  • Analyze payroll impacts related to benefits programs, including disability, paid family leave, taxable wages, deductions, imputed income, and year-end reporting.

  • Identify trends, risks, and opportunities through payroll, benefits, tax, and reporting data.

  • Evaluate impacts, risks, and alternatives before recommending changes or corrections.

  • Apply sound judgment when navigating ambiguous or non-standard payroll situations.


Required Qualifications:

  • 5+ years of progressive payroll experience with increasing levels of responsibility.

  • Strong analytical, troubleshooting, and problem-solving skills, including the ability to independently research and resolve complex payroll, tax, and benefits issues.

  • Experience with payroll audits, reconciliations, quarterly and year-end activities, taxable benefit reporting, and employee year-end reporting.

  • Experience supporting payroll system or process changes, including documenting requirements and decisions, managing scope, developing test scenarios, and executing positive and negative testing.

  • Experience with ADP GlobalView, SAP, or similar enterprise payroll systems.

  • Expert-level knowledge of gross-to-net payroll processing, including earnings, deductions, taxable benefits, statutory remittances, employer liabilities, general ledger impacts, payroll funding, and accounting reconciliations.

  • Advanced Excel and data analysis skills.

  • Ability to manage multiple priorities, work independently with minimal direction, and collaborate effectively within a team environment.


Preferred Qualifications:

  • CPP, FPC, or similar payroll certification.

  • Experience supporting international payroll operations, including expatriate payroll, mobile employees, cross-border taxation, and related compliance requirements across jurisdictions such as Canada, the United Kingdom, and Hong Kong.

  • Benefits administration or operations experience, particularly where benefits programs affect payroll taxation, disability payments, paid leave, taxable wages, or year-end reporting.

  • Experience serving as a lead tester, project contributor, subject matter expert, mentor, or escalation point.


When you join our team:

  • We'll empower you to learn and grow the career you want.

  • We'll recognize and support you in a flexible environment where well being and inclusion are more than just words.

  • As part of our global team, we'll support you in shaping the future you want to see.

#LI Hybrid
#LI-JH

The role being advertised is an existing vacancy.

About Manulife and John Hancock

Manulife Financial Corporation is a leading international financial services provider, helping people make their decisions easier and lives better. To learn more about us, visit https://www.manulife.com/en/about/our-story.html.

Manulife is an Equal Opportunity Employer

At Manulife/John Hancock, we embrace our diversity. We strive to attract, develop and retain a workforce that is as diverse as the customers we serve and to foster an inclusive work environment that embraces the strength of cultures and individuals. We are committed to fair recruitment, retention, advancement and compensation, and we administer all of our practices and programs without discrimination on the basis of race, ancestry, place of origin, colour, ethnic origin, citizenship, religion or religious beliefs, creed, sex (including pregnancy and pregnancy-related conditions), sexual orientation, genetic characteristics, veteran status, gender identity, gender expression, age, marital status, family status, disability, or any other ground protected by applicable law.

It is our priority to remove barriers to provide equal access to employment. A Human Resources representative will work with applicants who request a reasonable accommodation during the application process. All information shared during the accommodation request process will be stored and used in a manner that is consistent with applicable laws and Manulife/John Hancock policies. To request a reasonable accommodation in the application process, contact hr@manulife.com.

Referenced Salary Location

Boston, Massachusetts

Working Arrangement

Hybrid

Salary range is expected to be between

$61,875.00 USD - $103,125.00 USD

Employees also have the opportunity to participate in incentive programs and earn incentive compensation tied to business and individual performance. The actual salary will vary depending on local market conditions, geography and relevant job-related factors such as knowledge, skills, qualifications, experience, and education/training. If you are applying for this role outside of the primary location, please contact hr@manulife.com for the salary range for your location.

Manulife/John Hancock offers eligible employees a wide array of customizable benefits, including health, dental, mental health, vision, short- and long-term disability, life and AD&D insurance coverage, adoption/surrogacy and wellness benefits, and employee/family assistance plans. We also offer eligible employees various retirement savings plans (including pension/401(k) savings plans and a global share ownership plan with employer matching contributions) and financial education and counseling resources. Our generous paid time off program in the U.S. includes up to 11 paid holidays, 3 personal days, 150 hours of vacation, and 40 hours of sick time (or more where required by law) each year, and we offer the full range of statutory leaves of absence.

We use data and analytics technologies, such as artificial intelligence (AI), and automated processing tools, to analyze and process the information you provide to us or third parties in the application process. For more information, please refer to our personal information collection statement.

Know Your Rights I Family & Medical Leave I Employee Polygraph Protection I Right to Work I E-Verify

Company: John Hancock Life Insurance Company (U.S.A.)