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Contamination Control Engineer Jobs (NOW HIRING)

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How much do contamination control engineer jobs pay per year?

As of Aug 16, 2026, the average yearly pay for contamination control engineer in the United States is $96,574.00, according to ZipRecruiter salary data. Most workers in this role earn between $83,500.00 and $108,000.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a contamination control engineer?

A successful Contamination Control Engineer typically holds a degree in engineering or a related scientific field and possesses expertise in contamination control protocols, cleanroom practices, and environmental monitoring. Familiarity with relevant standards (such as ISO 14644), particulate and microbial detection systems, and certification in contamination control or cleanroom operations are often essential. Excellent attention to detail, problem-solving abilities, and strong communication skills help these engineers implement rigorous protocols and collaborate with multidisciplinary teams. These competencies are crucial to ensuring compliance with regulatory requirements, maintaining product quality, and protecting critical manufacturing or laboratory environments from contamination risks.

What is a contamination control engineer?

A Contamination Control Engineer is responsible for identifying, mitigating, and preventing contamination in controlled environments such as cleanrooms, manufacturing facilities, and laboratories. They develop and enforce protocols to control particles, microbes, and other contaminants that could impact product quality and safety. Their role often involves collaborating with cross-functional teams to ensure compliance with industry regulations and standards. Additionally, they conduct risk assessments, implement contamination control strategies, and oversee facility cleanliness to maintain optimal working conditions.

What are the typical challenges faced by contamination control engineers in the workplace?

Contamination Control Engineers often encounter the challenge of identifying and mitigating sources of particulate and microbial contamination in highly regulated environments such as pharmaceutical, semiconductor, or aerospace facilities. They must stay updated with evolving industry standards and continuously optimize processes despite changes in production or facility design. Collaboration with quality assurance, production, and facilities teams is routine, requiring strong communication to implement preventive measures effectively. These challenges can be rewarding, as overcoming them is essential to ensuring product quality, regulatory compliance, and a safe working environment.

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Infographic showing various Contamination Control Engineer job openings in the United States as of August 2026, with employment types broken down into 50% Full Time, and 50% Contract. Highlights an 50% In-person, and 50% Remote job distribution, with an average salary of $96,574 per year, or $46.4 per hour.

Director, Quality (Contamination Control and Microbial Excellence)

Thermo Fisher Scientific

OH • Remote

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Re-posted 9 days ago


Thermo Fisher Scientific rating

7.7

Company rating: 7.7 out of 10

Based on 426 frontline employees who took The Breakroom Quiz

199th of 540 rated manufacturers


Job description

Work Schedule

Standard (Mon-Fri)

Environmental Conditions

Office

Job Description

As part of the Thermo Fisher Scientific team, you’ll discover meaningful work that makes a positive impact on a global scale. Join our colleagues in bringing our Mission to life every single day to enable our customers to make the world healthier, cleaner and safer. We provide our global teams with the resources needed to achieve individual career goals while helping to take science a step beyond by developing solutions for some of the world’s toughest challenges, like protecting the environment, making sure our food is safe or helping find cures for cancer.
DESCRIPTION:

The Director, Quality (Contamination Control and Microbial Excellence) at Thermofisher plays a critical role in ensuring that all GMP operations maintain the highest standards of contamination control, sterility assurance and microbiological excellence. This position is a collaborative role, working with fellow CCME team members, Operations, MSAT, Engineering and quality colleagues.

The role is responsible for the definition and implementation of global policies and standards related to contamination control, sterility assurance and microbiology across all PSG sites to ensure alignment, standardization and compliance with current regulatory requirements.

ROLE AND RESPONSIBILITIES:

  • Support site based CCME colleagues to develop, implement, and maintain site contamination control strategies based on contamination control risk assessment in alignment with global quality procedures and EU GMP Annex 1, FDA 21 CFR, ISO and PIC/S.
  • Provide subject matter expertise (SME) in microbiology, microbiological methods, contamination control, aseptic processing, Environmental Monitoring, cleanroom design, cleaning and disinfection and other relevant areas required by site CCME teams and corporate quality management.  
  • Support global review of EM trends from the PSG network and work with site teams to remediate adverse trends and maintain environmental control in all cleanrooms.
  • Provide above-site support and direction to PSG sites for complex deviation or laboratory investigations related to Microbiology, Contamination Control and Sterility Assurance. Where appropriate, support with CAPA plan definition, preventive measures and continuous improvement initiatives.
  • Provide above-site support and direction to PSG sites for complex risk assessments related to Microbiology, Contamination Control and Sterility Assurance.
  • Provide guidance during facility and process design, including design led contamination controls and material/personnel and waste flows. Provide SME input into the qualification of manufacturing equipment and cleanroom that impact CCME including proper selection and validation of sterilization processes (e.g., autoclaves, SIP, filter integrity testing).
  • Inspection Readiness
  • Support digitalization and innovation across PSG sites

REQUIREMENTS:

  • Bachelor’s or advanced degree in Microbiology, Pharmaceutical Sciences, Biotech, or a related field.
  • 5–10 years experience in supporting sterile/low bioburden pharmaceutical manufacturing and/or microbiology roles.
  • Strong understanding of aseptic manufacturing, cleanroom classification, disinfection, and contamination control.
  • Deep knowledge of GMP, Annex 1 (2022 revision), FDA aseptic guidance
  • Understanding of barrier technologies (RABS, isolators) and their implementation
  • Effective communicator, able to influence and collaborate with cross-functional teams
  • Prior experience with regulatory inspections and audit defense.
  • Experience with CCS implementation preferred

Compensation and Benefits

The salary range estimated for this position based in North Carolina is $145,500.00–$218,250.00.

This position may also be eligible to receive a variable annual bonus based on company, team, and/or individual performance results in accordance with company policy. We offer a comprehensive Total Rewards package that our U.S. colleagues and their families can count on, which includes:

  • A choice of national medical and dental plans, and a national vision plan, including health incentive programs

  • Employee assistance and family support programs, including commuter benefits and tuition reimbursement

  • At least 120 hours paid time off (PTO), 10 paid holidays annually, paid parental leave (3 weeks for bonding and 8 weeks for caregiver leave), accident and life insurance, and short- and long-term disability in accordance with company policy

  • Retirement and savings programs, such as our competitive 401(k) U.S. retirement savings plan

  • Employees’ Stock Purchase Plan (ESPP) offers eligible colleagues the opportunity to purchase company stock at a discount

For more information on our benefits, please visit: https://jobs.thermofisher.com/global/en/total-rewards


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