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Contamination Control Engineer Jobs in Texas (NOW HIRING)

Microbiology Associate Director

El Paso, TX · On-site

$23 - $30.25/hr

It takes the imagination and passion of all of us--from design and engineering to the manufacturing ... Microbiology & Contamination Control * Act as the site SME for microbiology and contamination ...

Cleanroom Engineer

Sugar Land, TX · On-site

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

Summary Cleanroom Engineer will be responsible for the full-lifecycle technical management of the ... contamination control and stable cleanroom operation. Job Duties * New project technical ...

Cleanroom Technician I

Austin, TX · On-site

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

Follow all cleanroom gowning requirements, contamination control procedures, chemical handling ... Collaborate with Manufacturing Technicians, Orbital Welders, Quality Inspectors, Engineers, and ...

Collaborate with Process Engineers to support new process development, tool characterization, and ... Wear full cleanroom attire and comply with all safety and contamination control protocols. * Work ...

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Showing results 1-20

Contamination Control Engineer information

See Texas salary details

$51.2K

$90K

$122K

How much do contamination control engineer jobs pay per year?

As of Aug 16, 2026, the average yearly pay for contamination control engineer in Texas is $89,973.00, according to ZipRecruiter salary data. Most workers in this role earn between $77,800.00 and $100,600.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a contamination control engineer?

A successful Contamination Control Engineer typically holds a degree in engineering or a related scientific field and possesses expertise in contamination control protocols, cleanroom practices, and environmental monitoring. Familiarity with relevant standards (such as ISO 14644), particulate and microbial detection systems, and certification in contamination control or cleanroom operations are often essential. Excellent attention to detail, problem-solving abilities, and strong communication skills help these engineers implement rigorous protocols and collaborate with multidisciplinary teams. These competencies are crucial to ensuring compliance with regulatory requirements, maintaining product quality, and protecting critical manufacturing or laboratory environments from contamination risks.

What is a contamination control engineer?

A Contamination Control Engineer is responsible for identifying, mitigating, and preventing contamination in controlled environments such as cleanrooms, manufacturing facilities, and laboratories. They develop and enforce protocols to control particles, microbes, and other contaminants that could impact product quality and safety. Their role often involves collaborating with cross-functional teams to ensure compliance with industry regulations and standards. Additionally, they conduct risk assessments, implement contamination control strategies, and oversee facility cleanliness to maintain optimal working conditions.

What are the typical challenges faced by contamination control engineers in the workplace?

Contamination Control Engineers often encounter the challenge of identifying and mitigating sources of particulate and microbial contamination in highly regulated environments such as pharmaceutical, semiconductor, or aerospace facilities. They must stay updated with evolving industry standards and continuously optimize processes despite changes in production or facility design. Collaboration with quality assurance, production, and facilities teams is routine, requiring strong communication to implement preventive measures effectively. These challenges can be rewarding, as overcoming them is essential to ensuring product quality, regulatory compliance, and a safe working environment.

What are popular job titles related to Contamination Control Engineer jobs in Texas?

For Contamination Control Engineer jobs in Texas, the most frequently searched job titles are:

What job categories do people searching Contamination Control Engineer jobs in Texas look for?

The top searched job categories for Contamination Control Engineer jobs in Texas are:

Infographic showing various Contamination Control Engineer job openings in Texas as of August 2026, with employment types broken down into 60% Full Time, and 40% Contract. Highlights an 60% In-person, and 40% Remote job distribution, with an average salary of $89,973 per year, or $43.3 per hour.

Sr. Principal Scientist - Bioburden and Contamination Control Strategy

Eli Lilly and Company

Houston, TX • On-site

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 12 days ago


Eli Lilly and Company rating

8.8

Company rating: 8.8 out of 10

Based on 63 frontline employees who took The Breakroom Quiz

11th of 86 rated pharmaceutical


Job description

At Lilly, the work is demanding because patients are waiting. We unite caring with discovery to help make life better for people around the world, knowing that every decision, every detail, and every day matters. Headquartered in Indianapolis, Indiana, our over 50,000 employees around the globe take on complex challenges to discover and deliver life-changing medicines, strengthen how health is understood and managed, and support the communities we serve. This is hard, urgent, selfless work-but it's work worth doing. If you're driven by purpose and ready to bring your best to work that truly matters for patients, we invite you to join us.


Lilly is currently constructing an advanced manufacturing facility for production of API moleculeslocatedinHouston, Texas.This facility is intended to provide APIs for current and future products, including new modalities.This is a unique opportunity to be a part of thestartupteam for a greenfield manufacturing site, and the successful candidate will help build theprocesses andfacilityto enable a successful startup into GMP manufacturing operations.

Position Description:

The Sr Principal Scientist, Contamination Control Strategy is a technical leadership role responsible for designing, deploying, and sustaining a contamination control strategy (CCS) at Lilly's Houston API Manufacturing site. The role ensures the CCS aligns with technical, quality, and regulatory requirements, industry expectations, and business needs, applying data-driven decision-making and innovative technologies to continuously improve contamination control performance.

The successful candidate will bring strong knowledge of GMP, pharmaceutical regulatory requirements, and manufacturing operations, and will serve as the TS/MS (Technical Services) business SME on contamination control-partnering closely with process scientists, operations, Quality Control, Engineering, and Quality Assurance to ensure effective cross-functional alignment.

Key Objectives/Deliverables

  • Operations across Houston, ensuring CCS integration during Houston API facility start-up and ongoing support through routine GMP manufacturing and post-Process Validation phases.
  • Author, review, and approve technical documents (personnel qualification strategies, control strategies, investigations, change controls, procedures, technical studies) and support global implementation of CCS quality standards and tools.
  • Monitor and maintain cleanroom/controlled environment conditions, including oversight of routine environmental monitoring (EM) activities, in collaboration with site and cross-functional SMEs.
  • Develop statistically based metrics to assess process variability and capability; analyze trending data and prepare reports for management review.
  • Investigate contamination events and deviations, performing root cause analysis and implementing CAPAs.
  • Train staff on contamination control principles, gowning, cleaning/sanitization procedures, and cleanroom behavior.
  • Collaborate with Quality, Engineering, and Operations to assess contamination risks, implement mitigation strategies, and support internal/external audits.

Basic Requirements:

  • B.S. degree in Pharmacy, Science, Engineering or related STEM field.
  • 6+ years industry experience, including 3 years in GMP cleanroom manufacturing experience.
  • Qualified applicants must be authorized to work in the United States on a full-time basis. Lilly will not provide support for or sponsor work authorization or visas for this role, including but not limited to F-1 CPT, F-1 OPT, F-1 STEM OPT, J-1, H-1B, TN, O-1, E-3, H-1B1, or L-1.

Preferences:

  • Deep technical understanding of CCS and regulatory expectations across facilities, production practices, environmental monitoring, and bioburden control.
  • Strong data analysis, critical thinking, and problem-solving skills, with the ability to prioritize and manage multiple competing deadlines in a fast-changing environment.
  • Proven ability to work both independently and collaboratively across cross-functional teams.
  • Clear, effective oral and written communication across all levels of the organization.

Additional Information:

  • This is a fully on-site position located in Houston, TX. Standard 8-hour shift, 5 days/week; occasional night and weekend work may be required.
  • Travel to other Lilly domestic and international locations generally not exceeding 10%

Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form (https://careers.lilly.com/us/en/workplace-accommodation) for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.


Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.


Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia (AMECA), Black Employees at Lilly (BE@Lilly), Chinese Culture Network (CCN), EnAble, Evolve, Lilly Indian Network (LIN), Organization of Latinx at Lilly (OLA), Pride (LGBTQ+ Allies), Veterans Leadership Network (VLN) and Women's Initiative for Leading at Lilly (WILL).


Actual compensation will depend on a candidate's education, experience, skills, and geographic location. The anticipated wage for this position is

$66,000 - $171,600

Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly's compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.

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About Eli Lilly

Sourced by ZipRecruiter

Eli Lilly, based in Indianapolis, IN, US, is one of the pioneers in the pharmaceutical industry with a rich history dating back to 1876. This global pharmaceutical company focuses on discovering, developing, manufacturing and selling pharmaceutical products in approximately 120 countries. The company's product categories include endocrinology, oncology, cardiovascular, neuroscience, and immunology. Having invested over $9 billion in research and development in the past decade, Eli Lilly is also committed to creating high-quality medicines that meet real needs. As a recipient of several awards and recognitions, Eli Lilly is known for its focus on life-saving research and drug development. Their mission is to make medicines that help people live longer, healthier, and more active lives.

Industry

Pharmaceutical product wholesalers

Company size

10,000+ Employees

Headquarters location

Indianapolis, IN, US

Year founded

1876