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Computational Neuroscience Software Engineer Jobs

Software Engineer

San Francisco, CA · On-site

$140K - $200K/yr

About the Role As a Software Engineer , you will build the infrastructure that allows us to do high ... powers machine learning and computational neuroscience workflows. * Built core Python ...

... engineers and researchers, to design experiments to optimize next-generation neural decoding ... PhD/postdoc in neuroscience or a related field. * Extensive experience in designing and executing ...

... and computational neuroscience. The company is building a wearable device that measures and ... As the Founding Full-Stack iOS Engineer , you will own the companion iOS app end-to-end -- the ...

... and computational neuroscience. The company is building a wearable device that measures and ... As the Founding Full-Stack iOS Engineer , you will own the companion iOS app end-to-end - the ...

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Computational Neuroscience Software Engineer information

What are the typical daily responsibilities of a Computational Neuroscience Software Engineer?

A Computational Neuroscience Software Engineer typically spends their day developing and optimizing software tools for simulating neural circuits, analyzing large datasets, and collaborating closely with neuroscientists to support their research objectives. Regular tasks may include writing and testing code for neural models, troubleshooting computational issues, and maintaining or improving existing software pipelines. You’ll also participate in coding reviews, team meetings, and interdisciplinary discussions to ensure alignment between software capabilities and scientific goals. The role often involves both independent work and close collaboration with researchers, data scientists, and other engineers, creating a dynamic and intellectually stimulating environment.

What is a Computational Neuroscience Software Engineer job?

A Computational Neuroscience Software Engineer develops software tools, simulations, and models to analyze and interpret neural data. They work at the intersection of neuroscience, machine learning, and software engineering to advance our understanding of brain function. Responsibilities may include designing algorithms, optimizing data processing pipelines, and building neural network simulations. These engineers often collaborate with neuroscientists to translate biological insights into computational models. Strong programming skills, knowledge of neuroscience principles, and experience with scientific computing frameworks are typically required.

What are the key skills and qualifications needed to thrive in the Computational Neuroscience Software Engineer position, and why are they important?

To thrive as a Computational Neuroscience Software Engineer, you need a solid background in computer science, neural modeling, and applied mathematics, typically supported by a degree in a related field. Experience with programming languages such as Python, MATLAB, or C++, and familiarity with simulation frameworks or neuroinformatics platforms are highly desirable. Strong problem-solving skills, attention to detail, and effective teamwork and communication abilities help set you apart in this position. These skills enable you to efficiently develop, analyze, and refine computational models that advance neuroscience research and applications.

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Infographic showing various Computational Neuroscience Software Engineer job openings in the United States as of July 2026, with employment types broken down into 2% Internship, 71% Full Time, 25% Part Time, 1% Temporary, and 1% Contract. Highlights an 70% Physical, 1% Hybrid, and 29% Remote job distribution.
Research Scientist - Computational Neuroscience

Research Scientist - Computational Neuroscience

Astera Institute

Emeryville, CA • Remote

$90K - $200K/yr

Full-time

Posted 19 days ago


Job description

About Astera:

Astera is a private foundation on a mission to steer science and technology toward an abundant future. We believe the coming years will bring an era of unprecedented scientific and technological advancement as exponential progress in AI converges with central advances in other fields to dramatically accelerate innovation. This inflection point provides an unparalleled opportunity to fundamentally rethink the institutions, systems, and tools that drive scientific progress.

Unlike traditional non-profit research organizations, projects supported by Astera operate like high-velocity startups, allowing us to focus on ambitious goals, match structure to problem, and attract strong technical talent and leadership. You can read more about our mission, vision, and programming here.

Position Summary

Astera Institute is seeking a Research Scientist in Computational Neuroscience to develop computational models of neural circuits and brain function.

Responsibilities:
  • Read, analyze, and synthesize neuroscience, cognitive science, and computational neuroscience literature.

  • Develop biologically plausible computational models of neural circuits, brain regions, and large-scale brain systems.

  • Compare model predictions with experimental data and refine models accordingly.

  • Develop novel algorithms inspired by biological neural computation.

  • Analyze large-scale neural and behavioral datasets to inform and evaluate computational models.

  • Stay current with advances in neuroscience, machine learning, and computational modeling.

  • Propose and pursue original research directions that advance our understanding of brain computation.

  • Make novel scientific contributions to computational neuroscience through the development of new theories and models.

  • Document research findings and communicate results through technical reports, publications, and presentations.

Qualifications and Experience
  • Experience programming in Python

  • Familiarity with scientific computing libraries such as Jax, Pytorch, NumPy, SciPy, or similar tools

  • Research experience in systems, computational, and theoretical neuroscience.

  • Experience working with data analysis, statistics, or machine learning workflows

  • Ability to work independently and communicate technical findings clearly

Preferred Qualifications
  • Experience with machine learning or dynamical systems modeling

  • C++ programming experience is a strong bonus

  • Familiarity with Linux, Git, and high-performance computing environments

Nice-to-Have Areas of Interest
  • Neural circuit modeling

  • Synaptic plasticity and learning

  • Large-scale brain simulations

  • Data-driven modeling of neural systems

  • Interest in wet lab experiments to collect more data or test theories

Education
  • Ph.D. or equivalent demonstrated expertise in Computational Neuroscience, Neuroscience, Computer Science, Physics, Electrical Engineering, Applied Mathematics, or a related discipline.

Location

This position can be remote, hybrid, or onsite at our office in Emeryville, CA. Some travel may occasionally be required for collaboration and team events.

Compensation

The posted wage range is based on location in the Bay Area. The successful candidate will receive a competitive compensation package, commensurate with their experience and location.

  • Benefits Summary

Cultural Alignment
  • Surprising problem-solver – you love finding unexpected solutions to problems we don't even know we have, and see options where others only see constraints.

  • Flexible by default – you don't draw hard lines around your job description and expect your role to evolve significantly over 6–12 months.

  • Bias to action – you launch and iterate on thoughtful experiments rather than waiting for perfect plans, and you're energized by novel problems.

  • High standards, internally driven – you believe you can build the world's best vehicle for unleashing extraordinary individuals to create public goods, and you hold yourself to that bar without benchmarking against others.

  • Open to feedback – You create opportunities to give and receive honest feedback, staying focused on both personal and team growth, and committing to transparency even when it’s uncomfortable.

  • Operate with the highest levels of integrity, judgment, and stewardship -- you treat residents, peers, and vendors with genuine respect for their time and contributions.

  • Embrace the tools that define great work today – Astera is building for an AI-driven future and equips the team accordingly. We see these as genuine force multipliers, not optional extras, and we expect our people to use them.

  • Understand that theories are opinions until they’re adequately validated with data – follow the scientific method rigorously.

Compensation Range: $90K - $200K