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Clinical Systems Analyst Jobs in Wisconsin (NOW HIRING)

WI · On-site

$70 - $94/hr

The Business Systems Analyst - Supply Chain is responsible for supporting, maintaining, and ... clinicians. For more information visit aspirus.org. Click here to learn more. #J-18808-Ljbffr

Business Systems Analyst

Milwaukee, WI · On-site

$69K - $174K/yr

As a Business Systems Analyst with IQVIA, you'll support one or more product owners across a ... clinical research services, commercial insights and healthcare intelligence to the life sciences ...

As a Business Systems Analyst with IQVIA, you'll support one or more product owners across a ... clinical research services, commercial insights and healthcare intelligence to the life sciences ...

HIM Systems Analyst

Madison, WI · On-site

$31.01 - $48.84/hr

Collaborates with clinical, nonclinical and technical support teams to identify system needs and ... Data Analysis * HIM Software * Project Management * Detail Oriented * Workflow Process * Health ...

Bring your Clinical Systems expertise to the #1 hospital in Wisconsin working with Beaker AP/CP and ... We are seeking an Applications Analyst - Lab Systems to: * Be involved in cutting-edge support of ...

Bring your Clinical Systems expertise to the #1 hospital in Wisconsin working with Beaker AP/CP and ... We are seeking an Applications Analyst - Lab Systems to: * Be involved in cutting‑edge support of ...

OVERVIEW Experienced application support and systems professional skilled in application ... EDUCATION & EXPERIENCE Bachelor's Degree in Information Technology, Business, Clinical or other ...

OVERVIEW Experienced application support and systems professional skilled in application ... EDUCATION & EXPERIENCE Bachelor's Degree in Information Technology, Business, Clinical or other ...

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Clinical Systems Analyst information

See Wisconsin salary details

$55.5K

$94.7K

$134.2K

How much do clinical systems analyst jobs pay per year?

As of Aug 30, 2026, the average yearly pay for clinical systems analyst in Wisconsin is $94,697.00, according to ZipRecruiter salary data. Most workers in this role earn between $77,200.00 and $109,500.00 per year, depending on experience, location, and employer.

What is a clinical systems analyst?

A clinical systems analyst oversees the computer information systems at a hospital or other medical facility. As a clinical systems analyst, your job duties include the development of software applications to support hospital requirements, troubleshooting computer system issues, and testing changes to the facility's computer software. The qualifications to have a career as a clinical systems analyst include a bachelor’s degree in computer science and experience working in a medical setting.

What are the key skills and qualifications needed to thrive as a clinical systems analyst, and why are they important?

To thrive as a Clinical Systems Analyst, you need a solid background in healthcare IT, data analysis, and systems integration, often supported by a degree in health informatics or a related field. Familiarity with electronic health record (EHR) systems such as Epic or Cerner, as well as certifications like CPHIMS or experience with HL7 standards, is valuable. Strong problem-solving, communication, and project management skills help bridge the gap between clinical staff and IT teams. These skills ensure efficient implementation and optimization of clinical systems, ultimately improving patient care and organizational workflow.

How does a clinical systems analyst typically collaborate with healthcare providers to improve electronic health record (EHR) systems?

Clinical Systems Analysts work closely with physicians, nurses, and other healthcare staff to understand their workflow needs and address challenges with EHR systems. They gather user feedback, translate clinical requirements into technical specifications, and often participate in system customization, testing, and training sessions. Regular collaboration ensures that the EHR supports clinical processes efficiently, improves patient care, and complies with healthcare regulations. This role frequently involves cross-functional teamwork, including IT departments and clinical leadership, to drive continuous system improvements.

How much does a clinical systems analyst make?

The average salary for a clinical systems analyst is around $80,000 to $100,000 annually, depending on experience, certifications, and the healthcare setting. Salaries can vary based on location, with higher wages typically found in metropolitan areas and institutions requiring specialized knowledge of electronic health records (EHR) systems and healthcare IT tools.

What are popular job titles related to Clinical Systems Analyst jobs in Wisconsin?

For Clinical Systems Analyst jobs in Wisconsin, the most frequently searched job titles are:

What job categories do people searching Clinical Systems Analyst jobs in Wisconsin look for?

The top searched job categories for Clinical Systems Analyst jobs in Wisconsin are:

What cities in Wisconsin are hiring for Clinical Systems Analyst jobs?

Cities in Wisconsin with the most Clinical Systems Analyst job openings:

What are popular job titles related to Clinical Systems Analyst jobs in WI?

For Clinical Systems Analyst jobs in WI, the most frequently searched job titles are:

Infographic showing various Clinical Systems Analyst job openings in Wisconsin as of August 2026, with employment types broken down into 85% Full Time, 11% Part Time, 3% Contract, and 1% Nights. Highlights an 86% Physical, 2% Hybrid, and 12% Remote job distribution, with an average salary of $94,697 per year, or $45.5 per hour.

Application Analyst II - BH Clinical Systems

West Allis, WI


UHS
Health Care and Social Assistance • 10K+ employees

6.9

Company rating: 6.9 out of 10

Based on 254 frontline employees who took The Breakroom Quiz

459th of 895 rated healthcare providers

People enjoy working here

Recommended by students

Respectful managers


Full-time

Medical, Dental, Vision, Retirement, PTO

Re-posted 25 days ago


Job description

Responsibilities

One of the nation’s largest and most respected providers of hospital and healthcare services, Universal Health Services, Inc. (NYSE: UHS) has built an impressive record of achievement and performance. Growing steadily since its inception into an esteemed Fortune 300 corporation, annual revenues were $15.8 billion in 2024. During the year, UHS was again recognized as one of the World’s Most Admired Companies by Fortune; and listed in Forbes ranking of America’s Largest Public Companies.  Headquartered in King of Prussia, PA, UHS has approximately 99,000 employees and continues to grow through its subsidiaries. Operating acute care hospitals, behavioral health facilities, outpatient facilities and ambulatory care access points, an insurance offering, a physician network and various related services located all over the U.S. States, Washington, D.C., Puerto Rico and the United Kingdom. www.uhs.com

The Corporate Information Services Department is seeking a dynamic and talented Application Analyst II-BH Clinical Systems.

The Application Analyst II-BH Clinical Systems acts as a clinical liaison between the Corporate IS Department and the BH facility. Perform duties associated with implementation, training, support, and maintenance for all aspects of the clinical information system. Duties also include performing basic computer and computer peripherals troubleshooting skills. This position provides problem tracking, resolution, enhancement requests, active participation in system testing, workflow redesign, change management, and ongoing Cerner education to facility employees and physicians.

Key responsibilities include:

  • Provides on-going support and management of clinical applications
  • Regularly meets with users, vendors, and IS staff to develop/modify system specifications.
  • Supports the implementations of applications and prepares the appropriate documentation.
  • Performs system testing and documentation for all phases of the application development life cycle.
  • Performs Q/A on application functionality.
  • Researches and resolves implementation-related Customer Support Center Tickets.
  • Adheres to appropriate UHS Project Management standards.
  • Ensures strict adherence to work plans, reporting all serious deviations to management.
  • Assists with the training of users in operating procedures for application.
  • Coordinates project team member activities to achieve common objectives.
  • Working in conjunction with a project manager, monitors project plans. Tracks project status, issues and progress. 
  • Researches and resolves Customer Support Center Tickets including major application upgrades.
  • Adheres to UHS Service Level and Change Management Policies.
  • Provides on-call support as scheduled.
  • Establishes and maintains regular communications with user community.
  • Maintains Service Excellence principles.
  • Prepares and submits status reports to supervisor as required.
  • Keeps management well informed of activities, needs, problems.
  • Performs other tasks as required by management.

Qualifications

Position Requirements:

  • 2 years of completed college coursework towards a Bachelor’s degree or an Associate’s degree is required.
  • 3-5 years of related experience is required.
  • Understanding of clinical workflow and operational processes within a behavioral health facility including but not limited to nurse unit/dept, therapies, and intake. Previous Cerner experience is required.
  • Minimum two years direct patient care experience preferred. Basic computer skills and Microsoft Office experience required.
  • Advanced working knowledge of clinical information systems (Cerner) preferred.
  • Mentoring/leadership experience. Ability to collaborate with clinicians to discern software specifications, hardware requirements, and process improvement workflows.
  • Must be comfortable and confident interacting with physicians and clinicians at all levels.
  • Additional skills desired for the position include general IT knowledge that includes basic troubleshooting skills of computers, laptops, networks, and peripherals (printers, microphones, scanners, etc.)
  • Excellent verbal and written communication skills. 

License or Registration Requirements: Hospital or Healthcare facility experience preferred. Clinical and Application Knowledge preferred.

 

Travel Requirements: Up to 40% regional travel (depending on projects).

This opportunity provides the following:

  • Challenging and rewarding work environment
  • Growth and development opportunities within UHS and its subsidiaries
  • Competitive Compensation
  • Excellent Medical, Dental, Vision and Prescription Drug Plan
  • 401k plan with company match
  • Generous Paid Time Off

*UHS is a registered trademark of UHS of Delaware, Inc., the management company for Universal Health Services, Inc. and a wholly-owned subsidiary of Universal Health Services, Inc. Universal Health Services, Inc. is a holding company and operates through its subsidiaries including its management company, UHS of Delaware, Inc. All healthcare and management operations are conducted by subsidiaries of Universal Health Services, Inc. To the extent any reference to "UHS or UHS facilities" on this website including any statements, articles or other publications contained herein relates to our healthcare or management operations it is referring to Universal Health Services' subsidiaries including UHS of Delaware. Further, the terms "we," "us," "our" or "the company" in such context similarly refer to the operations of Universal Health Services' subsidiaries including UHS of Delaware. Any employment referenced in this website is not with Universal Health Services, Inc. but solely with one of its subsidiaries including but not limited to UHS of Delaware, Inc.

UHS is not accepting unsolicited assistance from search firms for this employment opportunity. Please, no phone calls or emails. All resumes submitted by search firms to any employee at UHS via-email, the Internet or in any form and/or method without a valid written search agreement in place for this position will be deemed the sole property of UHS. No fee will be paid in the event the candidate is hired by UHS as a result of the referral or through other means.

EEO Statement

All UHS subsidiaries are committed to providing an environment of mutual respect where equal employment opportunities are available to all applicants and teammates. UHS subsidiaries are equal opportunity employers and as such, openly support and fully commit to recruitment, selection, placement, promotion and compensation of individuals without regard to race, color, religion, age, sex (including pregnancy, gender identity, and sexual orientation), genetic information, national origin, disability status, protected veteran status or any other characteristic protected by federal, state or local laws.

We believe that diversity and inclusion among our teammates is critical to our success.

Notice

At UHS and all our subsidiaries, our Human Resources departments and recruiters are here to help prospective candidates by matching skillset and experience with the best possible career path at UHS and our subsidiaries.  We take pride in creating a highly efficient and best in class candidate experience. During the recruitment process, no recruiter or employee will request financial or personal information (Social Security Number, credit card or bank information, etc.) from you via email. The recruiters will not email you from a public webmail client like Hotmail, Gmail, Yahoo Mail, etc. If you are suspicious of a job posting or job-related email mentioning UHS or its subsidiaries, let us know by contacting us at: https://uhs.alertline.com or 1-800-852-3449.

Qualifications:

Position Requirements:

  • 2 years of completed college coursework towards a Bachelor’s degree or an Associate’s degree is required.
  • 3-5 years of related experience is required.
  • Understanding of clinical workflow and operational processes within a behavioral health facility including but not limited to nurse unit/dept, therapies, and intake. Previous Cerner experience is required.
  • Minimum two years direct patient care experience preferred. Basic computer skills and Microsoft Office experience required.
  • Advanced working knowledge of clinical information systems (Cerner) preferred.
  • Mentoring/leadership experience. Ability to collaborate with clinicians to discern software specifications, hardware requirements, and process improvement workflows.
  • Must be comfortable and confident interacting with physicians and clinicians at all levels.
  • Additional skills desired for the position include general IT knowledge that includes basic troubleshooting skills of computers, laptops, networks, and peripherals (printers, microphones, scanners, etc.)
  • Excellent verbal and written communication skills. 

License or Registration Requirements: Hospital or Healthcare facility experience preferred. Clinical and Application Knowledge preferred.

 

Travel Requirements: Up to 40% regional travel (depending on projects).

This opportunity provides the following:

  • Challenging and rewarding work environment
  • Growth and development opportunities within UHS and its subsidiaries
  • Competitive Compensation
  • Excellent Medical, Dental, Vision and Prescription Drug Plan
  • 401k plan with company match
  • Generous Paid Time Off

*UHS is a registered trademark of UHS of Delaware, Inc., the management company for Universal Health Services, Inc. and a wholly-owned subsidiary of Universal Health Services, Inc. Universal Health Services, Inc. is a holding company and operates through its subsidiaries including its management company, UHS of Delaware, Inc. All healthcare and management operations are conducted by subsidiaries of Universal Health Services, Inc. To the extent any reference to "UHS or UHS facilities" on this website including any statements, articles or other publications contained herein relates to our healthcare or management operations it is referring to Universal Health Services' subsidiaries including UHS of Delaware. Further, the terms "we," "us," "our" or "the company" in such context similarly refer to the operations of Universal Health Services' subsidiaries including UHS of Delaware. Any employment referenced in this website is not with Universal Health Services, Inc. but solely with one of its subsidiaries including but not limited to UHS of Delaware, Inc.

UHS is not accepting unsolicited assistance from search firms for this employment opportunity. Please, no phone calls or emails. All resumes submitted by search firms to any employee at UHS via-email, the Internet or in any form and/or method without a valid written search agreement in place for this position will be deemed the sole property of UHS. No fee will be paid in the event the candidate is hired by UHS as a result of the referral or through other means.

EEO Statement

All UHS subsidiaries are committed to providing an environment of mutual respect where equal employment opportunities are available to all applicants and teammates. UHS subsidiaries are equal opportunity employers and as such, openly support and fully commit to recruitment, selection, placement, promotion and compensation of individuals without regard to race, color, religion, age, sex (including pregnancy, gender identity, and sexual orientation), genetic information, national origin, disability status, protected veteran status or any other characteristic protected by federal, state or local laws.

We believe that diversity and inclusion among our teammates is critical to our success.

Notice

At UHS and all our subsidiaries, our Human Resources departments and recruiters are here to help prospective candidates by matching skillset and experience with the best possible career path at UHS and our subsidiaries.  We take pride in creating a highly efficient and best in class candidate experience. During the recruitment process, no recruiter or employee will request financial or personal information (Social Security Number, credit card or bank information, etc.) from you via email. The recruiters will not email you from a public webmail client like Hotmail, Gmail, Yahoo Mail, etc. If you are suspicious of a job posting or job-related email mentioning UHS or its subsidiaries, let us know by contacting us at: https://uhs.alertline.com or 1-800-852-3449.

Education:UNAVAILABLEEmployment Type: FULL_TIME

Universal Health Services logo

About Universal Health Services

Sourced by ZipRecruiter

Universal Health Services (UHS) is a major player in the healthcare industry, based in King of Prussia, Pennsylvania, U.S. Founded in 1978, UHS offers hospital and healthcare services. Their diverse services range from acute care hospitals, behavioral health facilities and ambulatory centers nationwide. The company's mission of enhancing the health and well-being of their patients is reflected in their commitment to 'Helping Individuals Live Longer, Healthier and Happier Lives'. Universal Health Services' consistent growth and success in their industry have been recognized on numerous occasions, including being ranked amongst the Fortune 500 list of largest companies.

Industry

Health care and social assistance

Company size

10,000+ Employees

Headquarters location

King of Prussia, PA, US


What Universal Health Services employees say

Pay

Benefits

Hours and flexibility

Workplace

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