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Spatial Transcriptomics Omics Jobs (NOW HIRING)

Athenomics LLC

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NGS Scientist

Framingham, MA · On-site

$80K - $140K/yr

Experience with spatial transcriptomics or other spatial omics workflows is a strong plus. No prior industry experience is required. We welcome PhD-level candidates with strong hands-on research ...

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Athenomics LLC

Be Seen First

NGS Scientist

Framingham, MA · On-site

$80K - $140K/yr

Experience with spatial transcriptomics or other spatial omics workflows is a strong plus. No prior industry experience is required. We welcome PhD-level candidates with strong hands-on research ...

New

Tuskegee University

... spatial transcriptomics datasets. * Develop and implement bioinformatics pipelines for variant calling, structural variant detection, transcriptome profiling, and integrative multi-omics analyses.

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Spatial Transcriptomics Omics information

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$49K

$203.5K

$400K

How much do spatial transcriptomics omics jobs pay per year?

As of Jun 21, 2026, the average yearly pay for spatial transcriptomics omics in the United States is $203,468.00, according to ZipRecruiter salary data. Most workers in this role earn between $78,500.00 and $400,000.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a Spatial Transcriptomics Specialist, and why are they important?

To thrive as a Spatial Transcriptomics Specialist, you need a strong background in molecular biology, genomics, and bioinformatics, typically supported by an advanced degree in a relevant field. Familiarity with high-throughput sequencing platforms, spatial omics technologies, and data analysis tools like R or Python is essential, along with experience using laboratory automation systems. Attention to detail, problem-solving abilities, and effective interdisciplinary communication are crucial soft skills for this role. These skills ensure accurate experimental design, robust data interpretation, and successful collaboration in cutting-edge biological research.

What is the difference between Spatial Transcriptomics Omics vs Spatial Transcriptomics Technician?

AspectSpatial Transcriptomics OmicsSpatial Transcriptomics Technician
Required CredentialsAdvanced degrees (Master's/PhD) in molecular biology, genomics, or related fieldsAssociate's or Bachelor's degree in biology, biotechnology, or related fields
Work EnvironmentResearch labs, biotech companies, academic institutionsLaboratories, research facilities, biotech companies
Industry UsageResearch and development, data analysis, method developmentSample preparation, data collection, equipment operation

Spatial Transcriptomics Omics professionals focus on data analysis, method development, and research, often requiring advanced degrees. In contrast, Spatial Transcriptomics Technicians handle sample preparation and operate equipment, typically with a technical diploma or bachelor's degree. Both roles are essential in the spatial transcriptomics industry but differ in responsibilities and qualifications.

What are some common challenges faced by professionals in Spatial Transcriptomics Omics, and how can they be addressed?

Professionals working in Spatial Transcriptomics Omics often encounter challenges such as managing and interpreting large, complex datasets, integrating multi-omics data, and keeping pace with rapidly evolving technologies. Effective collaboration with bioinformaticians, pathologists, and laboratory technicians is essential to ensure high-quality results. Staying updated with the latest analytical tools and participating in cross-disciplinary training can help overcome these challenges and enhance both research quality and career growth.

What is spatial transcriptomics in omics research?

Spatial transcriptomics is a cutting-edge technology in the field of omics that allows researchers to measure and map gene expression within the spatial context of intact tissue sections. This means scientists can see which genes are active in specific locations of a tissue, preserving the spatial relationships between cells. By combining spatial information with transcriptomic data, researchers gain deeper insights into tissue organization, cellular interactions, and disease mechanisms. This approach is especially valuable for understanding complex tissues like tumors or brain structures.
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What cities are hiring for Spatial Transcriptomics Omics jobs? Cities with the most Spatial Transcriptomics Omics job openings:
What states have the most Spatial Transcriptomics Omics jobs? States with the most job openings for Spatial Transcriptomics Omics jobs include:
What job categories do people searching Spatial Transcriptomics Omics jobs look for? The top searched job categories for Spatial Transcriptomics Omics jobs are:
Spatial Transcriptomics Omics jobs near you
Infographic showing various Spatial Transcriptomics Omics job openings in the United States as of June 2026, with employment types broken down into 80% Full Time, and 20% Contract. Highlights an 94% Physical, 1% Hybrid, and 5% Remote job distribution, with an average salary of $203,468 per year, or $97.8 per hour.

NGS Scientist

Athenomics LLC

Framingham, MA • On-site

$80K - $140K/yr

Full-time

This job post has expired today. Applications are no longer accepted.

Job description

Position Summary

Athenomics is seeking an NGS Scientist to join our laboratory team in Framingham, MA.

The ideal candidate has hands-on experience with NGS library preparation, including WGS, bulk RNA-seq, and 10x Genomics single-cell workflows. This role will support both bench execution and customer-facing experimental design. The NGS Scientist will help build, optimize, troubleshoot, and document workflows for standard and customized sequencing projects.

Experience with spatial transcriptomics or other spatial omics workflows is a strong plus. No prior industry experience is required. We welcome PhD-level candidates with strong hands-on research experience and the ability to work carefully, communicate clearly, and grow in a startup environment.

Key Responsibilities

* Perform NGS library preparation for WGS, bulk RNA-seq, and 10x Genomics single-cell applications.

* Execute 10x Genomics workflows, including 3’ transcriptome, 5’ transcriptome, and 5’ VDJ library preparation.

* Support sample QC, nucleic acid QC, library QC, pooling, documentation, and sequencing submission.

* Participate in customer experimental design discussions, including sample requirements, workflow selection, sequencing depth, and project feasibility.

* Troubleshoot challenging samples, including low-input RNA, fragile single-cell samples, special customer samples, and customized workflows.

* Support on-site single-cell service projects when needed.

* Develop, optimize, and document SOPs for NGS library preparation and QC workflows.

* Work closely with bioinformatics, operations, and sales teams to ensure smooth project execution from sample intake to data delivery.

* Maintain accurate laboratory records and support LIMS / workflow tracking.

* Contribute to continuous improvement of quality, turnaround time, reproducibility, and customer experience.

* Stay current with new NGS, single-cell, spatial, and library preparation technologies.

Required Qualifications

* PhD or experienced Master in molecular biology, genetics, genomics, biomedical sciences, biotechnology, medicine, or a related field.

* Hands-on experience with NGS library preparation.

* Strong understanding of sample QC, library QC, sequencing requirements, and common NGS failure points.

* Ability to participate in customer-facing scientific discussions and help design practical experimental plans.

* Bilingual fluency in English and Mandarin Chinese.

* Strong attention to detail, documentation discipline, and ability to work in a fast-paced startup environment.

* Excellent communication and teamwork skills.

Preferred Qualifications

* Experience with spatial transcriptomics or other spatial omics workflows.

* Experience with low-input RNA-seq, immune repertoire sequencing, antibody discovery workflows, metagenomics, or customized sequencing workflows.

* Familiarity with 10x Chromium instruments, Illumina sequencing platforms, and NovaSeq-scale sequencing requirements.

* Experience working in an NGS core facility, academic research lab, genomics service company, CRO, biotech company, or translational research environment.

* Basic understanding of bioinformatics deliverables such as FASTQ, BAM, VCF, expression matrix, cell-gene matrix, VDJ outputs, and QC reports.

* Experience developing, optimizing, or troubleshooting experimental protocols.

* Experience communicating with collaborators, customers, or cross-functional teams.

Compensation

The salary range for this position is $80,000–$140,000 per year, depending on background and qualifications.

Work Authorization

Athenomics supports **H-1B transfer, H-1B lottery, OPT, and STEM OPT extension** for qualified candidates, subject to applicable immigration requirements and company policy.