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Senior Flow Cytometry Director Jobs (NOW HIRING)

Crudo Consulting

Flow Cytometry Sales Representative (New York) February 22, 2026 | Biotech/Medical Device Our ... Lead generation activities by participating in state, regional, and national meetings as directed ...

IQVIA, Inc.

Associate Manager, Flow Cytometry

Valencia, CA · On-site

$58K - $122K/yr

Hire, train, mentor, and evaluate staff performance under the guidance of senior management ... In-depth knowledge of flow cytometry, clinical testing procedures, quality control, and laboratory ...

IQVIA

Associate Manager, Flow Cytometry

Valencia, CA

$58K - $122K/yr

Hire, train, mentor, and evaluate staff performance under the guidance of senior management ... Indepth knowledge of flow cytometry, clinical testing procedures, quality control, and laboratory ...

IQVIA

Associate Manager, Flow Cytometry

Valencia, CA

$58K - $122K/yr

Hire, train, mentor, and evaluate staff performance under the guidance of senior management ... Indepth knowledge of flow cytometry, clinical testing procedures, quality control, and laboratory ...

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$39.5K

$142.9K

$279.5K

How much do senior flow cytometry director jobs pay per year?

As of Sep 15, 2026, the average yearly pay for senior flow cytometry director in the United States is $142,920.00, according to ZipRecruiter salary data. Most workers in this role earn between $101,500.00 and $161,000.00 per year, depending on experience, location, and employer.

What does a senior flow cytometry director do?

A Senior Flow Cytometry Director oversees all aspects of flow cytometry operations within a laboratory or research facility. Their responsibilities include managing teams, developing protocols, ensuring data quality, and advancing the use of flow cytometry for scientific or clinical applications. They also play a key role in strategic planning, troubleshooting technical challenges, and collaborating with other departments or external partners. Additionally, they may provide training, oversee compliance with regulatory standards, and contribute to research publications or grant proposals.

How does a senior flow cytometry director typically collaborate with research scientists and clinical teams within an organization?

A Senior Flow Cytometry Director plays a pivotal role in bridging the gap between core flow cytometry operations and both research scientists and clinical teams. They frequently consult with researchers to design experiments, select appropriate panels, and interpret complex data. Additionally, they work closely with clinical teams to ensure that assays and protocols meet regulatory standards and clinical requirements. This collaborative environment fosters innovation and ensures that both research and clinical objectives are met efficiently and accurately.

What are the key skills and qualifications needed to thrive as a senior flow cytometry director, and why are they important?

To thrive as a Senior Flow Cytometry Director, you need advanced expertise in flow cytometry techniques, data analysis, and a strong background in immunology or cell biology, typically supported by a PhD or equivalent experience. Proficiency with flow cytometry instrumentation (e.g., BD FACSCanto, Cytek Aurora), analytical software (such as FlowJo, FCS Express), and compliance with GLP/GMP standards is essential. Leadership, project management, and effective communication are vital soft skills for guiding teams and collaborating with cross-functional stakeholders. These skills ensure the delivery of high-quality data, regulatory compliance, and effective leadership in complex research or clinical environments.

What is the difference between Senior Flow Cytometry Director vs Flow Cytometry Manager?

AspectSenior Flow Cytometry DirectorFlow Cytometry Manager
ResponsibilitiesOversees multiple projects, strategic planning, and team leadership in flow cytometry research and developmentManages daily operations, supervises technicians, and ensures experimental execution in flow cytometry
CredentialsAdvanced degree (PhD or equivalent), extensive experience in flow cytometry, leadership skillsBachelor's or Master's degree, hands-on flow cytometry experience, team management skills
Work EnvironmentResearch labs, biotech or pharma companies, academic institutionsLaboratories within research or clinical settings, reporting to senior staff

The Senior Flow Cytometry Director typically holds a higher strategic and leadership role, overseeing multiple projects and teams, while the Flow Cytometry Manager focuses on daily operations and technical supervision. Both roles require expertise in flow cytometry, but differ in scope and seniority.

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Senior Flow Cytometry Director jobs near you
Infographic showing various Senior Flow Cytometry Director job openings in the United States as of September 2026, with employment types broken down into 2% As Needed, 85% Full Time, 12% Part Time, and 1% Contract. Highlights an 89% Physical, 3% Hybrid, and 8% Remote job distribution, with an average salary of $142,920 per year, or $68.7 per hour.

Immunology Senior Research Scientist - Flow Cytometry

Seattle, WA • On-site

Vertex Pharmaceuticals
Biotechnology Research and Development • 1 - 5K employees
Learn more about Vertex Pharmaceuticalsexternal

$112K - $142K/yr

Full-time

Medical, Dental, Vision, Retirement, PTO

Re-posted 8 days ago

Vertex Pharmaceuticals rating

6.5

Company rating: 6.5 out of 10

Based on 5 frontline employees who took The Breakroom Quiz

Job description

Job Description
Job Description
At Vertex, we invest in scientific innovation to create transformative medicines for people with serious diseases. Our growing Molecular Profiling team is seeking a Senior Scientist, Flow Cytometry to provide deep technical expertise in flow cytometry and cellular profiling to support discovery, translational, and development programs. This role will lead and drive the generation of high-dimensional insights into cell phenotype, function, and biology that help inform mechanism of action, biomarker strategies, patient stratification, and program decision-making.
The successful candidate will independently own cytometry workstreams across multiple programs and contribute to the scientific direction of molecular profiling efforts.
The ideal candidate is a highly motivated scientist with strong experience in multiparameter and high-dimensional flow cytometry (spectral flow), cell sorting, and immunophenotyping and a proven ability to thrive in a collaborative, fast-paced research environment.
Key Duties and Responsibilities
  • Design, develop, optimize, and execute flow cytometry-based assays to support research and translational objectives across discovery and development programs
  • Lead multicolor immunophenotyping panel design, including marker selection, fluorochrome strategy, controls, and advanced gating and data analysis approaches
  • Apply flow cytometry in conjunction with molecular profiling data to enable deeper characterization of cell states, pathway activity, target engagement, and disease-relevant biology
  • Partner with cross-functional teams to integrate cellular and molecular datasets, including transcriptomic, proteomic, and biomarker data, to support hypothesis generation and program strategy
  • Analyze and interpret complex flow cytometry data to support actionable biological insights, mechanism of action studies, and translational hypotheses
  • Establish and apply best practices for sample preparation, staining, acquisition, compensation, quality control, and data analysis
  • Troubleshoot technical issues and drive continuous improvement in assay robustness, reproducibility, and efficiency
  • Contribute to experimental design, study planning, and strategic program discussions and decision-making
  • Prepare technical documentation, protocols, study summaries, and presentations
  • Evaluate and implement emerging cytometry and profiling technologies, reagents, and workflows where appropriate
  • Mentor junior team members and serve as a scientific resource within the broader organization
  • Independently lead cytometry workstreams across multiple programs, ensuring alignment with program goals and timelines
  • Influence program decisions through data-driven insights and clear communication of complex biological findings

Knowledge and Skills
  • Deep expertise in flow cytometry principles, instrumentation, and assay development
  • Strong understanding of immune profiling, cellular phenotyping, and molecular profiling strategies
  • Experience connecting cell-based phenotypic data with broader molecular signatures and translational biomarkers
  • Experience designing and optimizing high-parameter or multicolor flow cytometry panels, including intracellular and phospho-flow analysis
  • Proficiency in flow cytometry analysis software such as FlowJo, Dotmatics or equivalent
  • Working knowledge of data analysis approaches and familiarity with R or Python-based workflows (preferred)
  • Strong scientific reasoning, data interpretation, and problem-solving skills
  • Ability to communicate complex technical findings clearly to technical and cross-functional stakeholders
  • Strong organizational skills and the ability to manage multiple priorities in a matrixed environment
  • Demonstrated ability to operate with a high degree of independence while contributing to team-based goals

Education and Experience
  • PhD in Immunology, Cell Biology, Molecular Biology, Biology, Biomedical Sciences, or related discipline with 2+ years of relevant experience; or
  • Master's degree with 6+ years of relevant experience; or
  • Bachelor's degree with 8+ years of relevant experience

Preferred Qualifications
  • Experience with primary human samples, including blood- or tissue-derived specimens
  • Familiarity with spectral flow cytometry and cell sorting (BD, Cytek, Sony platforms)
  • Experience working in environments where molecular profiling and cell-based assays are jointly used to answer translational questions
  • Experience in immunology and inflammation disease areas
  • Experience supporting translational research, biomarker strategies, or clinical development
  • Experience integrating cytometry data with single-cell genomics, spatial transcriptomics, or proteomics datasets

At Vertex, we embrace continuous learning and encourage employees to stay informed on advances in AI, technology, automation, and industry trends. We seek talent who bring an external perspective, demonstrate curiosity and sound judgment, and thoughtfully adopt new capabilities that improve decision-making, drive innovation, increase efficiency, and help deliver better outcomes for patients.
Pay Range:
$124,200 - $186,400
Disclosure Statement:
The range provided is based on what we believe is a reasonable estimate for the base salary pay range for this job at the time of posting. This role is eligible for an annual bonus and annual equity awards. Some roles may also be eligible for overtime pay, in accordance with federal and state requirements. Actual base salary pay will be based on a number of factors, including skills, competencies, experience, and other job-related factors permitted by law.
At Vertex, our Total Rewards offerings also include inclusive market-leading benefits to meet our employees wherever they are in their career, financial, family and wellbeing journey while providing flexibility and resources to support their growth and aspirations. From medical, dental and vision benefits to generous paid time off (including a week-long company shutdown in the Summer and the Winter), educational assistance programs including student loan repayment, a generous commuting subsidy, matching charitable donations, 401(k) and so much more.
Flex Designation:
On-Site Designated
Flex Eligibility Status:
In this On-Site designated role, you will work five days per week on-site with ad hoc flexibility.
Note: The Flex status for this position is subject to Vertex's Policy on Flex @ Vertex Program and may be changed at any time.
#LI-Onsite
Company Information
Vertex is a global biotechnology company that invests in scientific innovation.
Vertex is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person's race, color, sex, gender identity or expression, age, religion, national origin, ancestry, ethnicity, disability, veteran status, genetic information, sexual orientation, marital status, or any characteristic protected under applicable law. Vertex is an E-Verify Employer in the United States. Vertex will make reasonable accommodations for qualified individuals with known disabilities, in accordance with applicable law.
Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which the applicant has applied should make a request to the recruiter or hiring manager, or contact Talent Acquisition at ApplicationAssistance@vrtx.com

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