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Senior Bioinformatics Software Engineer Jobs in Wisconsin

Senior Software Engineer

Milwaukee, WI ยท Hybrid

$120K - $159K/yr

Senior Software Engineer Join our team at Alegeus, where you'll experience unmatched opportunity and a culture that cares deeply about succeeding together. As a Senior Software Engineer, you'll drive ...

Sr. Software Engineer - Salesfore

Milwaukee, WI ยท Hybrid

$120K - $159K/yr

In the role of Sr. Software Engineer - Salesforce working in Milwaukee, WI you will be part of the Information Technology team reporting to the Senior Manager, Software Engineering. This role is a ...

Sr. Software Engineer - Salesfore

Milwaukee, WI ยท Hybrid

$120K - $159K/yr

In the role of Sr. Software Engineer - Salesforce working in Milwaukee, WI you will be part of the Information Technology team reporting to the Senior Manager, Software Engineering. This role is a ...

Senior Software Engineer

Waukesha, WI ยท On-site

$122K - $161K/yr

Summary As a Senior Software Engineer, you will own the design, development, and delivery of next-generation compute solutions for Magnetic Resonance Imaging (MRI) scanners. Working across global ...

Senior Software Engineer

Waukesha, WI ยท On-site

$122K - $161K/yr

Summary As a Senior Software Engineer, you will own the design, development, and delivery of nextgeneration compute solutions for Magnetic Resonance Imaging (MRI) scanners. Working across global ...

Sr. Software Engineer - Salesfore

Milwaukee, WI ยท Hybrid

$120K - $159K/yr

In the role of Sr. Software Engineer - Salesforce working in Milwaukee, WI you will be part of the Information Technology team reporting to the Senior Manager, Software Engineering. This role is a ...

WI ยท On-site

$120 - $180/hr

As Senior Software Engineer, you can have a tangible impact in helping medical practitioners translate their needs into smart software. Scope Starting from use cases designed with end-users and the ...

New

Senior Software Engineer

Milwaukee, WI ยท On-site

$120K - $159K/yr

Job Title Senior Software Engineer TITLE: Senior Software Engineer EMPLOYER: Fiserv Solutions, LLC LOCATION: Milwaukee, WI (and various unanticipated locations throughout the US subject to ...

Senior Software Engineer

Milwaukee, WI ยท On-site

$120K - $159K/yr

Job Title Senior Software Engineer TITLE: Senior Software Engineer EMPLOYER: Fiserv Solutions, LLC LOCATION: Milwaukee, WI (and various unanticipated locations throughout the US subject to ...

Senior Software Engineer

Milwaukee, WI ยท On-site

$120K - $158K/yr

In the Senior Software Engineer position, you'll lead the development of intelligent, adaptive, and scalable applications by leveraging AI-powered development tools and machine learning models. You ...

Sr. Software Engineer

Madison, WI ยท On-site

$123K - $162K/yr

As a Sr. Software Engineer, this seasoned professional will demonstrate competence and creativity in a wide range of technical areas. This role will have a lead role in the design, development, and ...

Sr. Software Engineer

Madison, WI ยท On-site

$123K - $162K/yr

As a Sr. Software Engineer, this seasoned professional will demonstrate competence and creativity in a wide range of technical areas. This role will have a lead role in the design, development, and ...

Sr. Software Engineer

Madison, WI ยท On-site

$123K - $162K/yr

As a Sr. Software Engineer, this seasoned professional will demonstrate competence and creativity in a wide range of technical areas. This role will have a lead role in the design, development, and ...

WI ยท On-site

$85 - $125/hr

The Senior Software Developer will lead and participate in all areas of development including design, coding, and testing in collaboration with the team. Responsibilities: * Responsible for the ...

New

Senior Software Engineer

Wausau, WI ยท On-site

$131K - $173K/yr

Position Summary We are seeking a Sr. Software Engineer to join our OPTUM UMR clinical technology team as an ETL Developer. In this role, you will play a critical part in the end-to-end (E2E ...

Senior Software Engineer

Oregon, WI ยท On-site

$160 - $200/hr

As a Senior Software Engineer at rePurpose, you will play a central role in architecting and scaling our platform -- building the reliable, high-performance systems that power compliance workflows ...

New

Senior Staff Software Engineer

Milwaukee, WI

$120K - $159K/yr

In the Senior Staff Software Engineer position, you'll lead the design and delivery of highly complex, AI-driven systems across multiple teams and platforms. You will define architectural patterns ...

WI ยท On-site

$140 - $180/hr

Senior Software Engineer At Nightwing, we are on a mission to develop resilient and scalable systems that support critical missions. We're looking for a talented Software Engineer who excels at ...

New

Senior Software Engineer

Wausau, WI ยท Remote

$131K - $173K/yr

Position Summary We are seeking a Sr. Software Engineer to join our OPTUM UMR clinical technology team as an ETL Developer. In this role, you will play a critical part in the end-to-end (E2E ...

Showing results 21-40

Senior Bioinformatics Software Engineer information

See Wisconsin salary details

$85.3K

$103.2K

$120.6K

How much do senior bioinformatics software engineer jobs pay per year?

As of Aug 8, 2026, the average yearly pay for senior bioinformatics software engineer in Wisconsin is $103,228.00, according to ZipRecruiter salary data. Most workers in this role earn between $95,400.00 and $111,000.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a senior bioinformatics software engineer?

To thrive as a Senior Bioinformatics Software Engineer, you need a strong background in computer science, biology, and data analysis, often supported by an advanced degree in bioinformatics or a related field. Expertise with programming languages (such as Python, R, or Java), cloud computing, bioinformatics tools, and version control systems is typically required, along with experience using databases and relevant software frameworks. Strong problem-solving skills, collaboration, and effective communication are crucial soft skills for working with multidisciplinary teams and presenting complex data. These combined skills enable the effective development and maintenance of robust software tools that support cutting-edge biological research and data-driven discoveries.

How does a senior bioinformatics software engineer typically collaborate with cross-functional teams in a research or clinical setting?

Senior Bioinformatics Software Engineers frequently work alongside biologists, data scientists, and clinicians to develop and maintain computational pipelines for data analysis. They play a key role in translating complex biological questions into scalable software solutions, often leading code reviews, mentoring junior developers, and ensuring data integrity. Regular meetings and clear communication are vital, as the role requires aligning technical development with scientific goals and regulatory requirements. This collaborative environment offers opportunities to influence project direction and contribute to impactful discoveries.

What does a senior bioinformatics software engineer do?

A Senior Bioinformatics Software Engineer designs, develops, and maintains software tools and pipelines to analyze biological data, such as genomic or proteomic information. They work closely with scientists and researchers to understand data requirements and translate them into efficient, scalable computational solutions. Their responsibilities often include coding, troubleshooting, optimizing algorithms, as well as mentoring junior engineers and contributing to project planning. Senior engineers are expected to have strong programming skills, a solid understanding of bioinformatics concepts, and experience working with large biological datasets.

What is the difference between Senior Bioinformatics Software Engineer vs Bioinformatics Software Engineer?

AspectSenior Bioinformatics Software EngineerBioinformatics Software Engineer
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related field; experience in software development and bioinformatics toolsBachelor's or Master's in Bioinformatics, Computer Science, or related field; less emphasis on extensive experience
Work EnvironmentResearch labs, biotech companies, healthcare institutions, often leading projectsResearch teams, biotech firms, academic settings, supporting bioinformatics analysis
Employer & Industry UsageUsed in biotech, pharma, healthcare, research institutionsCommon in similar industries, often as entry to mid-level roles

The main difference between a Senior Bioinformatics Software Engineer and a Bioinformatics Software Engineer lies in experience and responsibility. Senior roles typically require more advanced skills, leadership, and project management, while entry-level roles focus on supporting bioinformatics analysis and software development. Both roles are vital in biotech and research industries, but senior positions involve greater oversight and strategic input.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in Wisconsin? The most popular types of Bioinformatics Software Engineer jobs in Wisconsin are:
What are popular job titles related to Senior Bioinformatics Software Engineer jobs in Wisconsin? For Senior Bioinformatics Software Engineer jobs in Wisconsin, the most frequently searched job titles are:
What job categories do people searching Senior Bioinformatics Software Engineer jobs in Wisconsin look for? The top searched job categories for Senior Bioinformatics Software Engineer jobs in Wisconsin are:
What cities in Wisconsin are hiring for Senior Bioinformatics Software Engineer jobs? Cities in Wisconsin with the most Senior Bioinformatics Software Engineer job openings:

Senior Software Engineer

Alegeus

Milwaukee, WI โ€ข Hybrid

$120K - $159K/yr

Full-time

Medical, PTO

Re-posted 29 days ago


Job description

Do you want to shape the future of fintech and healthtech? Energized by challenges and inspired by bold goals? Ready to elevate your career alongside driven and talented colleagues? If that sounds like you, explore a career at Alegeus today. Opportunity Happens Here.

Senior Software Engineer

Join our team at Alegeus, where you'll experience unmatched opportunity and a culture that cares deeply about succeeding together. As a Senior Software Engineer, you'll drive our technology vision forward and push the boundaries of innovation with cutting-edge solutions. This is your opportunity to work with groundbreaking technology and tackle complex challenges, shaping of future of our tech landscape. If you are passionate about innovation and eager to make a difference, we would love to have you as a part of our dynamic and forward-thinking team.

OPPORTUNITY HAPPENS HERE - REALIZE YOURS

Alongside the best and the brightest, you will regularly:

  • Build impactful, high-performance software by developing, testing, and maintaining scalable, secure applications within a collaborative Scrum team.

  • Solve complex business challenges alongside software engineers, QA, and product owners while continuously improving code quality, team productivity, and technical practices.

  • Be a key contributor from design to deployment-translate user stories into innovative solutions, write clean code, and document technical specifications.

  • Embrace continuous learning and mentorship by helping teammates grow professionally and promoting best practices in coding, security, and development processes.

  • Support critical systems through occasional off-hours on-call rotation (every 3-4 months) and release deployments to ensure platform availability and reliability.

  • Stay engaged and connected with occasional travel (up to 15%) to participate in company events, workshops, and conferences.

ESSENTIAL SKILLS FOR CREATING A LASTING IMPACT

Alegeus colleagues are known as problem-solvers, risk-takers, and innovative thinkers. As a Senior Software Engineer, these skills are essential for success:

  • Abilities: Extensive experience developing high-volume, transactional SaaS web applications with strong expertise in T-SQL, SQL Server performance tuning, and Agile methodologies; preferred background includes .NET 8.0+, ASP.NET Web API, LINQ, Dapper, Test Driven Development, real-time financial systems, automated unit testing, and business modeling using UML and use cases.

  • Experience: 3+ years of software development experience with deep expertise in web application development using C#, ASP.NET, .NET Core, RESTful services, MS SQL Server/T-SQL, Pub/Sub, and object-oriented design, along with hands-on experience in Azure cloud solutions, Kubernetes environments, and microservices architecture.

  • Education: Bachelor's degree in Computer Science, Information Systems or other related discipline isrequired. Master'sdegree preferred.

  • Location:This job is hybrid and will require you to be in the Boston office 25% of the time.

#LI-Hybrid

#LI-JK1

BECAUSE WE CARE, WE OFFER:

  • A flexible work environment

  • Competitive salaries, paid vacation, and holidays

  • Robust professional development programs

  • Comprehensive health, wellness, and financial packages

SHARED AMBITION. INSPIRED FUTURE.

At Alegeus, our success is guided by our aligned vision and values-it is how we work together and collaborate to achieve our goals.

  • People First. We pride ourselves in bringing talented people together and treating one another with care.

  • Partner Powered. We are committed to empowering our partners, knowing our success is shared and we win as one.

  • Always Advancing. We are driven by potential and relentlessly determined to achieve our goals.

"I truly believe that people who are well-skilled and talented can go wherever they want in this company. We want to create the best place anyone has ever worked." - Alegeus employee

Apply now, connect a friend to this opportunity, or sign up for job alerts!

We are committed to a policy of Equal Employment Opportunity and will not discriminate against an applicant or employee on the basis of race, color, religion, creed, national origin or ancestry, sex, age, physical or mental disability, veteran or military status, genetic information, sexual orientation, marital status, or any other legally recognized protected basis under federal, state or local laws, regulations or ordinances. The information collected by this application is solely to determine suitability for employment, verify identity and maintain employment statistics on applicants.

The posted salary range reflects the minimum and maximum target for this position's compensation grade and represents a blended range across our three hub locations: Florida, Massachusetts, and Wisconsin. Within this range, individual compensation is determined based on a variety of factors, including but not limited to job-related skills, experience, and education. This range may also be adjusted based on geographic location and market conditions. In addition to base salary, total compensation may include bonuses, incentive plans, and a comprehensive benefits package.


Position Compensation Range:

$88,000.00 - $149,900.00

Alegeus may use AI technology during candidate interviews. The uses include recording, note-taking, and summarizing candidate interviews. The information generated by the AI technology will be used by Alegeus during the hiring process. If you wish to opt out of having AI technology transcribe your interview, please notify your recruiter in advance of the interview. Otherwise, by agreeing to an interview with us, you consent to the use of AI technology during your interview.