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Senior Bioinformatics Software Engineer Jobs in Wisconsin

Ametek

Senior Software Engineer

Madison, WI · On-site

$123K - $162K/yr

The Senior Software Engineer contributes through deep technical expertise, hands-on development, and technical guidance, without direct people management responsibilities. In this role, the ...

Fiserv, Inc.

Senior Software Engineer

Milwaukee, WI · On-site

$120K - $159K/yr

Job Title Senior Software Engineer TITLE: Senior Software Engineer EMPLOYER: Fiserv Solutions, LLC LOCATION: Milwaukee, WI (and various unanticipated locations throughout the US subject to ...

Fiserv, Inc.

Senior Software Engineer

Milwaukee, WI · On-site

$120K - $159K/yr

Job Title Senior Software Engineer TITLE: Senior Software Engineer EMPLOYER: Fiserv Solutions, LLC LOCATION: Milwaukee, WI (and various unanticipated locations throughout the US subject to ...

Exactsciences

Sr. Software Engineer

Madison, WI · On-site

$123K - $162K/yr

Position Overview As a Sr. Software Engineer, this seasoned professional will demonstrate competence and creativity in a wide range of technical areas. This role will have a lead role in the design ...

Direct Supply

Senior Software Engineer

Milwaukee, WI · On-site

$120K - $158K/yr

In the Senior Software Engineer position, you'll lead the development of intelligent, adaptive, and scalable applications by leveraging AI-powered development tools and machine learning models. You ...

Exact Sciences

Sr. Software Engineer

Madison, WI · On-site

$123K - $162K/yr

Position Overview As a Sr. Software Engineer, this seasoned professional will demonstrate competence and creativity in a wide range of technical areas. This role will have a lead role in the design ...

UnitedHealth Group

Senior Software Engineer

Wausau, WI · On-site

$131K - $173K/yr

Position Summary We are seeking a Sr. Software Engineer to join our OPTUM UMR clinical technology team as an ETL Developer. In this role, you will play a critical part in the end-to-end (E2E ...

UnitedHealth Group

Senior Software Engineer

Wausau, WI · Remote

$131K - $173K/yr

Position Summary We are seeking a Sr. Software Engineer to join our OPTUM UMR clinical technology team as an ETL Developer. In this role, you will play a critical part in the end-to-end (E2E ...

Directsupply

Senior Staff Software Engineer

Milwaukee, WI

$120K - $159K/yr

In the Senior Staff Software Engineer position, you'll lead the design and delivery of highly complex, AI-driven systems across multiple teams and platforms. You will define architectural patterns ...

Direct Supply, Inc.

Senior Software Engineer

Milwaukee, WI · On-site

$120K - $159K/yr

In the Senior Software Engineer position, you'll lead the development of intelligent, adaptive, and scalable applications by leveraging AI-powered development tools, machine learning models, and ...

Directsupply

Senior Software Engineer

Milwaukee, WI · On-site

$120K - $159K/yr

In the Senior Software Engineer position, you'll lead the development of intelligent, adaptive, and scalable applications by leveraging AI-powered development tools, machine learning models, and ...

GE HealthCare

Sr. Software Engineer

Waukesha, WI · On-site

$122K - $161K/yr

GE HealthCare is shaping the next generation of MR scanner technology, seeking a Senior Software Engineer. This role involves designing, developing, and testing software components in a collaborative ...

Johnson Controls

Sr. Software Engineer

Glendale, WI · On-site

$114K - $150K/yr

... software. This Senior AI/ML Engineer role sits at the center of that transformation. You will do two things in roughly equal measure: build production AI/ML and GenAI capabilities directly into our ...

Johnson Controls

Sr. Software Engineer

Glendale, WI

$114K - $150K/yr

... software. This Senior AI/ML Engineer role sits at the center of that transformation. You will do two things in roughly equal measure: build production AI/ML and GenAI capabilities directly into our ...

Infleqtion

Sr Software Engineer

Madison, WI · On-site

$106K - $145K/yr

We are seeking a Senior Software Engineer to join the team building the control system software for Infleqtion's quantum computers. The ideal candidate is an experienced backend engineer with a ...

Infleqtion

Sr Software Engineer

Madison, WI · On-site

$106K - $145K/yr

We are seeking a Senior Software Engineer to join the team building the control system software for Infleqtion's quantum computers. The ideal candidate is an experienced backend engineer with a ...

GE HealthCare

Senior Software Engineer

Waukesha, WI · On-site

$122K - $161K/yr

Summary As a Senior Software Engineer, you will own the design, development, and delivery of next-generation compute solutions for Magnetic Resonance Imaging (MRI) scanners. Working across global ...

Gehc

Senior Software Engineer

Waukesha, WI

$122K - $161K/yr

Summary As a Senior Software Engineer, you will own the design, development, and delivery of nextgeneration compute solutions for Magnetic Resonance Imaging (MRI) scanners. Working across global ...

Resource Innovations

Senior Software Engineer

Madison, WI · On-site +1

$123K - $162K/yr

Resource Innovations is seeking Senior Software Engineer to join our growing Software as a Service (SaaS) team. As a hands-on technical lead at Resource Innovations, you will be instrumental in the ...

Resource Innovations

Senior Software Engineer

Madison, WI

$123K - $162K/yr

Resource Innovations is seeking Senior Software Engineer to join our growing Software as a Service (SaaS) team. As a hands-on technical lead at Resource Innovations, you will be instrumental in the ...

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All JobsBioinformatics Software Engineer JobsSenior Bioinformatics Software Engineer JobsSenior Bioinformatics Software Engineer Jobs in Wisconsin

Senior Bioinformatics Software Engineer information

See Wisconsin salary details

$85.3K

$103.2K

$120.6K

How much do senior bioinformatics software engineer jobs pay per year?

As of Jul 18, 2026, the average yearly pay for senior bioinformatics software engineer in Wisconsin is $103,228.00, according to ZipRecruiter salary data. Most workers in this role earn between $95,400.00 and $111,000.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a Senior Bioinformatics Software Engineer, and why are they important?

To thrive as a Senior Bioinformatics Software Engineer, you need a strong background in computer science, biology, and data analysis, often supported by an advanced degree in bioinformatics or a related field. Expertise with programming languages (such as Python, R, or Java), cloud computing, bioinformatics tools, and version control systems is typically required, along with experience using databases and relevant software frameworks. Strong problem-solving skills, collaboration, and effective communication are crucial soft skills for working with multidisciplinary teams and presenting complex data. These combined skills enable the effective development and maintenance of robust software tools that support cutting-edge biological research and data-driven discoveries.

How does a Senior Bioinformatics Software Engineer typically collaborate with cross-functional teams in a research or clinical setting?

Senior Bioinformatics Software Engineers frequently work alongside biologists, data scientists, and clinicians to develop and maintain computational pipelines for data analysis. They play a key role in translating complex biological questions into scalable software solutions, often leading code reviews, mentoring junior developers, and ensuring data integrity. Regular meetings and clear communication are vital, as the role requires aligning technical development with scientific goals and regulatory requirements. This collaborative environment offers opportunities to influence project direction and contribute to impactful discoveries.

What does a Senior Bioinformatics Software Engineer do?

A Senior Bioinformatics Software Engineer designs, develops, and maintains software tools and pipelines to analyze biological data, such as genomic or proteomic information. They work closely with scientists and researchers to understand data requirements and translate them into efficient, scalable computational solutions. Their responsibilities often include coding, troubleshooting, optimizing algorithms, as well as mentoring junior engineers and contributing to project planning. Senior engineers are expected to have strong programming skills, a solid understanding of bioinformatics concepts, and experience working with large biological datasets.

What is the difference between Senior Bioinformatics Software Engineer vs Bioinformatics Software Engineer?

AspectSenior Bioinformatics Software EngineerBioinformatics Software Engineer
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related field; experience in software development and bioinformatics toolsBachelor's or Master's in Bioinformatics, Computer Science, or related field; less emphasis on extensive experience
Work EnvironmentResearch labs, biotech companies, healthcare institutions, often leading projectsResearch teams, biotech firms, academic settings, supporting bioinformatics analysis
Employer & Industry UsageUsed in biotech, pharma, healthcare, research institutionsCommon in similar industries, often as entry to mid-level roles

The main difference between a Senior Bioinformatics Software Engineer and a Bioinformatics Software Engineer lies in experience and responsibility. Senior roles typically require more advanced skills, leadership, and project management, while entry-level roles focus on supporting bioinformatics analysis and software development. Both roles are vital in biotech and research industries, but senior positions involve greater oversight and strategic input.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in Wisconsin? The most popular types of Bioinformatics Software Engineer jobs in Wisconsin are:
What are popular job titles related to Senior Bioinformatics Software Engineer jobs in Wisconsin? For Senior Bioinformatics Software Engineer jobs in Wisconsin, the most frequently searched job titles are:
What job categories do people searching Senior Bioinformatics Software Engineer jobs in Wisconsin look for? The top searched job categories for Senior Bioinformatics Software Engineer jobs in Wisconsin are:
What cities in Wisconsin are hiring for Senior Bioinformatics Software Engineer jobs? Cities in Wisconsin with the most Senior Bioinformatics Software Engineer job openings:
Senior Bioinformatics Software Engineer jobs near you
Senior Software Engineer

Senior Software Engineer

Ametek

Madison, WI • On-site

$123K - $162K/yr

Full-time

Re-posted 27 days ago

AMETEK rating

7.6

Company rating: 7.6 out of 10

Based on 44 frontline employees who took The Breakroom Quiz

69th of 143 rated electronics manufacturers

Job description

The Senior Software Engineer acts as a recognized technical expert and a reference for complex software components. The Senior Software Engineer contributes through deep technical expertise, hands-on development, and technical guidance, without direct people management responsibilities. In this role, the individual will design and develop AP Suite software for reconstruction and analysis of Atom Probe Tomography (APT) data, while providing technical leadership for key components of the platform.
Key Responsibilities
Technical Leadership & Architecture
  • Provide architectural direction for key AP Suite components (reconstruction pipelines, data models, analysis workflows)
  • Act as a technical expert and reference for complex software components
  • Guide design decisions to ensure scalable and robust solutions

Software Development
  • Design, develop, and maintain Windows desktop applications for large 3D atom probe datasets
  • Build and enhance scientific analysis algorithms with a focus on accuracy, performance, and usability
  • Develop high-performance solutions using multithreading and efficient memory management

Sustaining Engineering & Optimization
  • Lead defect analysis, refactoring, and modernization of existing software
  • Drive performance improvements across algorithms and data pipelines

Collaboration & Support
  • Collaborate with scientists, service teams, customers, and third parties to deliver production-ready software
  • Provide technical troubleshooting and guidance to cross-functional teams
  • Mentor and guide other engineers as needed

Requirements
Education & Professional Experience
  • Bachelor's degree in Computer Science or related field (or equivalent experience)
  • 8+ years of professional software development experience with increasing responsibility
  • Experience working in collaborative development environments (source control, CI/CD, testing, documentation)
  • Strong experience developing Windows desktop applications

Technical Experience
  • Experience designing and maintaining complex Windows desktop applications using C#, C++, or similar languages
  • Strong background in .NET desktop development (WPF, MVVM) and data access (Entity Framework)
  • Familiarity with modern development practices (source control, Agile, Clean Code, continuous integration)
  • Experience developing or implementing 3D data analysis algorithms in scientific or engineering domains
  • Ability to build performance-critical, multithreaded applications handling large datasets
  • Experience designing user interfaces for technical or scientific users
  • Ability to quickly learn and apply complex domain knowledge
  • Experience owning components across releases and contributing to design and mentoring is a plus
  • Demonstrated ability and willingness to use AI tools to improve productivity, decision-making, work quality, and to reduce costs. The successful candidate must be able to identify appropriate AI use cases and critically evaluate AI-generated outputs.

Soft Skills
  • Ability to work independently with strong analytical, communication, and teamwork skills
  • Strong focus on quality and pride in delivering results

About Us:
CAMECA is a world leader in the design and manufacture of scientific instruments for elemental and isotopic microanalysis. CAMECA is a business unit of AMETEK, Inc., with offices located in Paris, France, and Madison, WI. CAMECA is committed to continuously broadening our product offerings and expanding the range of applications each instrument and technique can address through sustained, long-term R&D investments and close collaborations with leading academic research units. Today, our products serve a broad range of laboratory and process control applications in end markets that include semiconductor, nanoscience, environment, geology, nuclear, and material sciences.
For more information, visit www.ametek.com/ and www.cameca.com/
Compensation
Employee Type: Salaried
Currency: USD
Salary Minimum: 115,000
Salary Maximum: 155,000
Incentive: No
Disclaimer: Where a specific pay range is noted, it is a good faith estimate at the time of this posting. The actual salary offered will be based on experience, skills, qualifications, market / business considerations, and geographic location.
For more information on AMETEK's competitive benefits, please click here.
AMETEK, Inc. is a leading global provider of industrial technology solutions serving a diverse set of attractive niche markets with annual sales over $7.5 billion.
AMETEK is committed to making a safer, sustainable, and more productive world a reality. We use differentiated technology solutions to solve our customers' most complex challenges. We employ 22,000 colleagues, in 35 countries, that are grounded by our core values: Ethics and Integrity, Respect for the Individual, Inclusion, Teamwork, and Social Responsibility. AMETEK is a component of the S&P 500. Visit https://www.ametek.com/careers for more information.
We are an Equal Opportunity Employer and do not discriminate against any employee or applicant for employment because of race, color, sex, age, national origin, religion, sexual orientation, gender identity, status as a veteran, and basis of disability or any other federal, state or local protected class. Individuals who need a reasonable accommodation because of a disability for any part of the employment process should call 1 (866) 263-8359.

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