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Machine Learning Secret Clearance Jobs (NOW HIRING)

CoVar

Machine Learning Engineer

Durham, NC

Machine Learning Engineer About CoVar CoVar is a small AI/ML R&D software company in Durham, NC ... Active US security clearance (secret or higher) Benefits * Competitive salary, cash bonus, equity ...

Leidos

Machine Learning Engineer

Beavercreek, OH

$87K - $157K/yr

As a Machine Learning Engineer, you will apply your skills to a wide variety of problems and ... Possess an active SECRET clearance or higher, with an ability to obtain a TS/SCI clearance. * US ...

Leidos

Machine Learning Engineer

Beavercreek, OH

$87K - $157K/yr

As a Machine Learning Engineer, you will apply your skills to a wide variety of problems and ... Possess an active SECRET clearance or higher, with an ability to obtain a TS/SCI clearance. * US ...

Leidos

Machine Learning Engineer

Beavercreek, OH · On-site

$87K - $157K/yr

As a Machine Learning Engineer, you will apply your skills to a wide variety of problems and ... Possess an active SECRET clearance or higher, with an ability to obtain a TS/SCI clearance. * US ...

ClearanceJobs

Machine Learning Engineer Jobs

Goodyear, AZ · On-site

$110K/yr

Active Top Secret Clearance (SCI eligibility; CI Poly preferred or ability to obtain) * Bachelor ... Machine Learning Engineering * Applied AI/ML development * Production ML systems * Strong Python ...

Tenacious Solutions, LLC

Be Seen First

Data Scientist - Secret Clearance

Washington, DC · On-site

The Data Scientist will perform advanced analytics, machine learning modeling, statistical ... A secret clearance at a minimum is required, with the ability to obtain and hold up to a TS/SCI ...

The Marlin Alliance

Sr Machine Learning Engineer

San Diego, CA · On-site

$110K - $152K/yr

Active Secret clearance required; TS SCI clearance highly preferred Responsibilities: * Design, develop, and implement machine learning models and algorithms for naval applications. * Develop and ...

The Marlin Alliance

Sr Machine Learning Engineer

San Diego, CA · On-site

$112K - $154K/yr

Active Secret clearance required; TS SCI clearance highly preferred Responsibilities: * Design, develop, and implement machine learning models and algorithms for naval applications. * Develop and ...

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Machine Learning Secret Clearance information

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How much do machine learning secret clearance jobs pay per hour?

As of Jun 6, 2026, the average hourly pay for machine learning secret clearance in the United States is $26.35, according to ZipRecruiter salary data. Most workers in this role earn between $21.39 and $27.88 per hour, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a Machine Learning Engineer with Secret Clearance, and why are they important?

To thrive as a Machine Learning Engineer with Secret Clearance, you need a solid background in computer science, mathematics, and machine learning theory, typically supported by a relevant degree and eligibility for security clearance. Familiarity with frameworks like TensorFlow or PyTorch, programming languages such as Python, and secure data handling protocols is essential, and certifications like CompTIA Security+ can be valuable. Strong analytical thinking, problem-solving abilities, and effective communication are crucial soft skills for collaborating with interdisciplinary teams in sensitive environments. These skills ensure the development of robust, secure, and innovative AI solutions that meet strict government or defense requirements.

What is the difference between Machine Learning Secret Clearance vs Data Scientist with Secret Clearance?

AspectMachine Learning Secret ClearanceData Scientist with Secret Clearance
Required CredentialsSecurity clearance, specialized machine learning knowledge, programming skillsSecurity clearance, statistical, programming, and data analysis skills
Work EnvironmentGovernment agencies, defense contractors, classified projectsGovernment agencies, private sector, research institutions
Employer & Industry UsagePrimarily defense, intelligence, aerospaceWide range including government, tech, finance
Common Search & ComparisonYesYes

Both roles require security clearance and technical expertise, but Machine Learning Secret Clearance focuses more on developing AI models for classified projects, while Data Scientist with Secret Clearance emphasizes data analysis and insights across various sectors. The roles often overlap in government and defense sectors, but differ in specific skill sets and project focus.

What unique challenges might I face working as a Machine Learning Engineer with Secret Clearance, and how does this affect daily responsibilities?

Working as a Machine Learning Engineer with Secret Clearance often involves handling sensitive or classified data, which introduces unique challenges such as adhering to strict security protocols and limited access to certain resources or external tools. Your daily responsibilities may include developing models in secure environments, collaborating closely with cross-functional teams cleared at similar levels, and ensuring all work complies with government regulations. While the work can be highly impactful and intellectually stimulating, it requires strong attention to detail, adaptability, and an understanding of data security practices.

What is a Machine Learning Secret Clearance job?

A Machine Learning Secret Clearance job involves developing and implementing machine learning models and algorithms within organizations that require employees to hold a U.S. government Secret security clearance. These roles typically support classified projects for government agencies or defense contractors, ensuring that sensitive data and methods are handled securely. Professionals in these positions combine expertise in artificial intelligence with knowledge of security protocols, working on tasks like data analysis, predictive modeling, and automation within a secure environment. The Secret clearance requirement demonstrates an individual's trustworthiness and eligibility to access classified information, which is essential for national security work.
More about Machine Learning Secret Clearance jobs
What cities are hiring for Machine Learning Secret Clearance jobs? Cities with the most Machine Learning Secret Clearance job openings:
What states have the most Machine Learning Secret Clearance jobs? States with the most job openings for Machine Learning Secret Clearance jobs include:
What job categories do people searching Machine Learning Secret Clearance jobs look for? The top searched job categories for Machine Learning Secret Clearance jobs are:
Machine Learning Secret Clearance jobs near you
Infographic showing various Machine Learning Secret Clearance job openings in the United States as of May 2026, with employment types broken down into 28% Full Time, 70% Part Time, 1% Contract, and 1% Nights. Highlights an 94% Physical, 1% Hybrid, and 5% Remote job distribution, with an average salary of $54,803 per year, or $26.3 per hour.

Machine Learning Engineer

CoVar

Durham, NC

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 19 days ago

Job description

Machine Learning Engineer

About CoVar

CoVar is a small AI/ML R&D software company in Durham, NC, that uses artificial intelligence to solve problems that matter. We develop AI/ML tools to help the DoD detect enemies and threats, help biomedical researchers find new cures for diseases, and help monitor machinery to prevent injuries and environmental catastrophes. We are passionate engineers, dedicated to pushing the bounds of what AI/ML can do in the real world.

About this position

You will help CoVar develop software and machine learning algorithms to solve real-world customer problems. You will work with data, develop algorithms, evaluate results, and write the production code that goes onto real-world systems. You will have the opportunity to present your work to high-level customers in the DoD and in the industry. The position includes opportunities to publish novel work in both classified and unclassified settings.

Qualifications

Applicants should have expertise in Python (including NumPy, pandas, and other packages) and either PyTorch or TensorFlow. Deep understanding of machine learning fundamentals (gradient descent, cross-validation, ROC curves, confusion matrices) are necessary. Knowledge of classical machine learning (e.g., support-vector-machines, logistic regression) are valued. Applicants are ideally familiar with computer vision algorithms like object detection networks (e.g., YOLO, CenterNet) and modern image classification techniques. Previous experience with DoD customers is a plus.

Minimum qualifications

  • Software expertise: Python and associated numerical and analytics packages (NUMPY, PANDAS, etc.); git; PYTORCH or TensorFlow; CI/CD pipelines and regression testing.
  • AI/ML expertise: Machine learning fundamentals; Deep knowledge of state-of-the-art in any of the following: computer vision (preferred), natural language processing, classical machine learning, Bayesian models, etc.
  • B.S., preferably M.S. or Ph.D in engineering, math, computer science, or related field
  • Excellent technical communication skills
  • Ability to work in Durham, NC (relocation assistance available)
  • Eligibility for US security clearance (US citizenship is required)

Bonus skills

  • Department of Defense project experience
  • Active US security clearance (secret or higher)

Benefits

  • Competitive salary, cash bonus, equity structure, and 401k with employer contributions
  • Excellent health care coverage, including dental and vision plans
  • Parental leave
  • Short-term and long-term disability insurance
  • Life insurance
  • Flexible work schedule
  • Tuition support
  • PTO and paid holidays

Visit us: www.covar.com