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Internship Bioinformatics Software Engineer Jobs in Baltimore, MD

STScI

Software Engineer, II - HRC0016263

Baltimore, MD · On-site

$96K - $132K/yr

... software engineering, data analytics, or a related technical role ... Internship, research, academic, or personal project experience is encouraged. * Strong problem ...

Danaher

Software Automation Internships

Annapolis, MD · On-site

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... internship start * Experience with hands-on lab testing and technical documentation (e.g., lab ...

Danaher

Software Automation Internships

Bowie, MD

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... internship start * Experience with hands-on lab testing and technical documentation (e.g., lab ...

Danaher

Software Automation Internships

Bowie, MD · On-site

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... internship start * Experience with hands-on lab testing and technical documentation (e.g., lab ...

Danaher

Software Automation Internships

Towson, MD

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... internship start * Experience with hands-on lab testing and technical documentation (e.g., lab ...

Danaher

Software Automation Internships

Towson, MD · On-site

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... internship start * Experience with hands-on lab testing and technical documentation (e.g., lab ...

Danaher

Software Automation Internships

Baltimore, MD · On-site

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... internship start * Experience with hands-on lab testing and technical documentation (e.g., lab ...

Danaher

Software Automation Internships

Largo, MD

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... internship start * Experience with hands-on lab testing and technical documentation (e.g., lab ...

Danaher

Software Automation Internships

Largo, MD · On-site

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... internship start * Experience with hands-on lab testing and technical documentation (e.g., lab ...

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All JobsBioinformatics Software Engineer JobsInternship Bioinformatics Software Engineer JobsInternship Bioinformatics Software Engineer Jobs in Baltimore, MD

Internship Bioinformatics Software Engineer information

See Baltimore, MD salary details

$13

$25

$38

How much do internship bioinformatics software engineer jobs pay per hour?

As of Aug 7, 2026, the average hourly pay for internship bioinformatics software engineer in Baltimore, MD is $25.25, according to ZipRecruiter salary data. Most workers in this role earn between $20.53 and $28.65 per hour, depending on experience, location, and employer.

What is the difference between Internship Bioinformatics Software Engineer vs Bioinformatics Data Analyst?

AspectInternship Bioinformatics Software Engineer
Required CredentialsEnrolled in or recent graduate of Computer Science, Bioinformatics, or related fields
Work EnvironmentResearch labs, biotech companies, or academic institutions
Employer & Industry UsageUsed in biotech, pharmaceutical, and research organizations for software development
Common Search & ComparisonCompared for entry-level software development roles in bioinformatics

While both roles involve working with biological data, an Internship Bioinformatics Software Engineer focuses on developing software tools and algorithms, often requiring programming skills and software development knowledge. A Bioinformatics Data Analyst primarily analyzes biological data, using statistical and data visualization tools. The internship provides hands-on experience in coding and software creation, whereas a data analyst role emphasizes data interpretation and reporting.

What does an internship bioinformatics software engineer do?

An Internship Bioinformatics Software Engineer assists in developing and maintaining software tools used to analyze biological data, such as DNA sequences or protein structures. They often work under the supervision of senior engineers and scientists to write code, troubleshoot issues, and implement algorithms for biological research. Interns may also help process large datasets, visualize results, and collaborate with interdisciplinary teams. This role provides hands-on experience in both software development and the application of computational methods to biological problems.

What types of projects do internship bioinformatics software engineers typically work on?

Internship Bioinformatics Software Engineers often work on projects involving the development and optimization of software tools for analyzing large biological datasets, such as genomic sequences or protein structures. These projects frequently require collaboration with biologists and data scientists, offering valuable exposure to interdisciplinary teamwork. Interns may be tasked with writing code, testing algorithms, or visualizing data, all of which build practical skills in both software engineering and bioinformatics. This hands-on experience not only enhances technical proficiency but also helps interns better understand real-world applications in life sciences, setting a strong foundation for future career growth.

What are the key skills and qualifications needed to thrive as an internship bioinformatics software engineer?

To thrive as an Internship Bioinformatics Software Engineer, you need a foundational understanding of programming (often in Python, R, or Java), basic knowledge of molecular biology or genomics, and current pursuit of a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools (such as BLAST, Bioconductor, or Galaxy), version control systems like Git, and experience analyzing biological datasets are typically expected. Strong problem-solving abilities, attention to detail, and effective communication skills help interns collaborate and learn in multidisciplinary teams. These skills and qualities ensure interns can contribute to meaningful research, adapt quickly to new technologies, and facilitate teamwork in complex scientific environments.
What are the most commonly searched types of Bioinformatics Software Engineer jobs in Baltimore, MD? The most popular types of Bioinformatics Software Engineer jobs in Baltimore, MD are:
What are popular job titles related to Internship Bioinformatics Software Engineer jobs in Baltimore, MD? For Internship Bioinformatics Software Engineer jobs in Baltimore, MD, the most frequently searched job titles are:
What job categories do people searching Internship Bioinformatics Software Engineer jobs in Baltimore, MD look for? The top searched job categories for Internship Bioinformatics Software Engineer jobs in Baltimore, MD are:
Internship Bioinformatics Software Engineer jobs near you

Software Engineer, II - HRC0016263

STScI

Baltimore, MD • On-site

$96K - $132K/yr

Full-time

Medical, Dental, Vision, Retirement, PTO

Posted 7 days ago

Job description

The Space Telescope Science Institute (STScI), operated by the Association of Universities for Research in Astronomy (AURA), is NASA's science operations center for missions including the Hubble and James Webb Space Telescopes. We are seeking a Junior Data Engineer to join our Data Management Division. In this role, you will help build and support the backend data infrastructure that powers the Mikulski Archive for Space Telescopes (MAST)-one of the world's most advanced astronomical public data archives. MAST provides reliable access to scientific data from missions including HST, JWST, Roman, and TESS. This position can support hybrid work (around twice a quarter, in the office). Candidates must reside in or be willing to relocate to our local market. (MD, DE, VA, PA, DC & WV). This position requires US Citizenship or Permanent Residence to meet ITAR requirements.
Responsibilities
Assist in building, maintaining, monitoring, and troubleshooting data pipelines using Apache Airflow to process, transform, and load large-scale datasets.
  • Support PostgreSQL and MPP platform operations, including performance monitoring and routine maintenance.
  • Help build and improve data systems that support scientific research, including relational databases and cloud-based Lakehouse architectures.
  • Monitor data quality, reliability, and system health through logging, alerting, and operational best practices.
  • Collaborate with senior data engineers, scientists, and cross-functional teams to understand requirements and implement scalable data solutions.
  • Participate in testing, documentation, and continuous improvement of data engineering processes.

Preferred Technical Skills
Working knowledge of PostgreSQL or other relational databases.
  • Familiarity with Apache Airflow or an eagerness to learn workflow orchestration tools.
  • Experience with Python programming and SQL.
  • Exposure to AWS cloud services through coursework, internships, personal projects, or professional experience.
  • Understanding of ETL/ELT concepts and data pipeline fundamentals.
  • Familiarity with Git and software development best practices.

Required Qualifications
  • Bachelor's degree in Computer Science, Information Technology, Data Science, or a related field (or equivalent practical experience).
  • 3-7 years of experience in data engineering, software engineering, data analytics, or a related technical role. Internship, research, academic, or personal project experience is encouraged.
  • Strong problem-solving skills, willingness to learn, and the ability to work collaboratively in a team environment.

You'll Have the Opportunity to Grow Into Designing and optimizing production-scale data pipelines and distributed data systems.
  • Working with advanced technologies such as Trino, Apache Iceberg, Greenplum, and modern Lakehouse architectures.
  • Developing expertise in AWS cloud services, PostgreSQL performance tuning, distributed query engines, and large-scale scientific data processing.
  • Taking ownership of increasingly complex data engineering projects while being mentored by experienced engineers.

Candidates at all levels of seniority will be considered, with the level of appointment commensurate with the candidate's education and expertise.
Our excellent benefits include:
  • Employer retirement contribution - direct STScI contribution of 10% of your salary from your first day
  • 12 days sick leave, up to 24 days' vacation, and 10 paid holidays
  • Flexible work schedule with healthy work/life balance
  • Comprehensive medical/dental/vision/prescription plans, and more!

Please only use this link to apply -Astronomical Optics Scientist
Reference #: 0016263
Individuals needing assistance with the employment process can contact us at careers@stsci.edu.
Equal Opportunity Employer
This employer is required to notify all applicants of their rights pursuant to federal employment laws. For further information, please review the Know Your Rights notice from the Department of Labor.

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