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Internship Bioinformatics Software Engineer Jobs in Baltimore, MD

Danaher

Software Engineer Internships

Towson, MD · On-site

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

Danaher

Software Engineer Internships

Annapolis, MD · On-site

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

Danaher

Software Engineer Internships

Largo, MD · On-site

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

Danaher

Software Engineer Internships

Baltimore, MD · On-site

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

Danaher

Software Engineer Internships

Bowie, MD · On-site

By submitting your interest, you'll be among the first to know when internship opportunities open ... About Software Engineering Roles at Danaher Are you passionate about building real-world ...

Beth Page tech

Software Engineer

Maryland City, MD · Remote

Software Engineer Location : Remote Type : Full Time : We are seeking a motivated Junior Software ... Basic programming experience (e.g., internships, academic projects, or professional work)

Ring0 Technologies Inc

Be Seen First

Software Engineer

Fort George G Meade, MD · On-site

Software Engineer RING0-25-00000064 Fort Meade, MD, US, 20755 Full-Time TS/SCI w/Poly Ring0 ... or internship experience acceptable) * Experience developing software in C, C++, C#, Java, or ...

Ring0 Technologies Inc

Be Seen First

Software Engineer

Fort George G Meade, MD · On-site

Software Engineer RING0-25-00000064 Fort Meade, MD, US, 20755 Full-Time TS/SCI w/Poly Ring0 ... or internship experience acceptable) * Experience developing software in C, C++, C#, Java, or ...

LufCo

Software Engineer

Aberdeen, MD · On-site

$85K - $190K/yr

Software Engineer (All levels welcome to apply) Location: Aberdeen, MD; 60-100% onsite Reports To ... Bachelors Degree in Computer Science, or related field, and internship experience or 1-4 years of ...

LufCo

Software Engineer

Aberdeen, MD

$85K - $190K/yr

Software Engineer (All levels welcome to apply) Location: Aberdeen, MD; 60-100% onsite Reports To ... Bachelors Degree in Computer Science, or related field, and internship experience or 1-4 years of ...

LufCo

Software Engineer

Aberdeen, MD · On-site

$85K - $190K/yr

Software Engineer (All levels welcome to apply) Location: Aberdeen, MD; 60-100% onsite Reports To ... Bachelors Degree in Computer Science, or related field, and internship experience or 1-4 years of ...

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Internship Bioinformatics Software Engineer information

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How much do internship bioinformatics software engineer jobs pay per hour?

As of Jul 26, 2026, the average hourly pay for internship bioinformatics software engineer in Baltimore, MD is $25.25, according to ZipRecruiter salary data. Most workers in this role earn between $20.53 and $28.65 per hour, depending on experience, location, and employer.

What is the difference between Internship Bioinformatics Software Engineer vs Bioinformatics Data Analyst?

AspectInternship Bioinformatics Software Engineer
Required CredentialsEnrolled in or recent graduate of Computer Science, Bioinformatics, or related fields
Work EnvironmentResearch labs, biotech companies, or academic institutions
Employer & Industry UsageUsed in biotech, pharmaceutical, and research organizations for software development
Common Search & ComparisonCompared for entry-level software development roles in bioinformatics

While both roles involve working with biological data, an Internship Bioinformatics Software Engineer focuses on developing software tools and algorithms, often requiring programming skills and software development knowledge. A Bioinformatics Data Analyst primarily analyzes biological data, using statistical and data visualization tools. The internship provides hands-on experience in coding and software creation, whereas a data analyst role emphasizes data interpretation and reporting.

What does an Internship Bioinformatics Software Engineer do?

An Internship Bioinformatics Software Engineer assists in developing and maintaining software tools used to analyze biological data, such as DNA sequences or protein structures. They often work under the supervision of senior engineers and scientists to write code, troubleshoot issues, and implement algorithms for biological research. Interns may also help process large datasets, visualize results, and collaborate with interdisciplinary teams. This role provides hands-on experience in both software development and the application of computational methods to biological problems.

What types of projects do Internship Bioinformatics Software Engineers typically work on, and how do these projects contribute to their professional development?

Internship Bioinformatics Software Engineers often work on projects involving the development and optimization of software tools for analyzing large biological datasets, such as genomic sequences or protein structures. These projects frequently require collaboration with biologists and data scientists, offering valuable exposure to interdisciplinary teamwork. Interns may be tasked with writing code, testing algorithms, or visualizing data, all of which build practical skills in both software engineering and bioinformatics. This hands-on experience not only enhances technical proficiency but also helps interns better understand real-world applications in life sciences, setting a strong foundation for future career growth.

What are the key skills and qualifications needed to thrive as an Internship Bioinformatics Software Engineer, and why are they important?

To thrive as an Internship Bioinformatics Software Engineer, you need a foundational understanding of programming (often in Python, R, or Java), basic knowledge of molecular biology or genomics, and current pursuit of a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools (such as BLAST, Bioconductor, or Galaxy), version control systems like Git, and experience analyzing biological datasets are typically expected. Strong problem-solving abilities, attention to detail, and effective communication skills help interns collaborate and learn in multidisciplinary teams. These skills and qualities ensure interns can contribute to meaningful research, adapt quickly to new technologies, and facilitate teamwork in complex scientific environments.
What are the most commonly searched types of Bioinformatics Software Engineer jobs in Baltimore, MD? The most popular types of Bioinformatics Software Engineer jobs in Baltimore, MD are:
What are popular job titles related to Internship Bioinformatics Software Engineer jobs in Baltimore, MD? For Internship Bioinformatics Software Engineer jobs in Baltimore, MD, the most frequently searched job titles are:
What job categories do people searching Internship Bioinformatics Software Engineer jobs in Baltimore, MD look for? The top searched job categories for Internship Bioinformatics Software Engineer jobs in Baltimore, MD are:
Internship Bioinformatics Software Engineer jobs near you
Bioinformatics Engineer (Hybrid)

Bioinformatics Engineer (Hybrid)

Quest Diagnostics

Baltimore, MD • On-site

$95K/yr

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 13 days ago

ExamOne rating

6.6

Company rating: 6.6 out of 10

Based on 9 frontline employees who took The Breakroom Quiz

98th of 120 rated laboratories

Job description


Pay Range: $95,000.00 - $125,000.00 / year
Salary offers are based on a wide range of factors including relevant skills, training, experience, education, and, where applicable, certifications obtained. Market and organizational factors are also considered. Successful candidates may be eligible to receive annual performance bonus compensation.
Benefits Information:
We are proud to offer best-in-class benefits and programs to support employees and their families in living healthy, happy lives. Our pay and benefit plans have been designed to promote employee health in all respects - physical, financial, and developmental. Depending on whether it is a part-time or full-time position, some of the benefits offered may include:
• Day 1 Medical, supplemental health, dental & vision for FT employees who work 30+ hours
• Best-in-class well-being programs
• Annual, no-cost health assessment program Blueprint for Wellness®
• healthyMINDS mental health program
• Vacation and Health/Flex Time
• 6 Holidays plus 1 "MyDay" off
• FinFit financial coaching and services
• 401(k) pre-tax and/or Roth IRA with company match up to 5% after 12 months of service
• Employee stock purchase plan
• Life and disability insurance, plus buy-up option
• Flexible Spending Accounts
• Annual incentive plans
• Matching gifts program
• Education assistance through MyQuest for Education
• Career advancement opportunities
• and so much more!
About Haystack Oncology
Haystack Oncology, now part of Quest Diagnostics, is a next-generation liquid biopsy company focused on advancing tumor-informed minimal residual disease (MRD) testing. Our proprietary technology enables highly sensitive and specific detection of circulating tumor DNA (ctDNA), improving patient outcomes through earlier detection of residual disease.
As we continue to expand our assay portfolio and bring cutting-edge diagnostics to the public, we are seeking a skilled Bioinformatics Scientist to join our growing team. This role will play a critical part in supporting clinical production testing, clinical trials, and assay R&D for Quest Diagnostics laboratories in the US and Europe.
Role Overview
As a Bioinformatics Scientist, you will develop and maintain cloud-based computational infrastructure for the analysis of genomic data from our proprietary MRD assays. You will work cross-functionally with laboratory, LIMS, and IT teams to ensure seamless integration of bioinformatics workflows with clinical and research operations.
Responsibilities
  • Develop & maintain cloud infrastructure for scalable and efficient genomic data analysis.
  • Implement and optimize Python and Nextflow bioinformatics workflows.
  • Integrate bioinformatics pipelines with Laboratory Information Management Systems (LIMS) to streamline data processing.
  • Ensure compliance with IT security and privacy controls, aligning with Quest Diagnostics' corporate policies.
  • Apply software engineering best practices, contributing to the scalability, robustness, and maintainability of bioinformatics pipelines.
  • Develop and manage databases and applications for quality control (QC) and assay performance monitoring.
  • Document and validate bioinformatics systems in compliance with regulatory and quality standards for clinical diagnostics

Qualifications
Required:
  • Background in software or infrastructure engineering, with experience in bioinformatics.
  • Proficiency in bioinformatics pipeline workflow management, particularly Nextflow (preferred), Cromwell, or CWL.
  • Hands-on experience developing cloud-native infrastructure (AWS preferred) for storage, batch computing, and serverless applications.
  • Expertise in infrastructure as code (IaC) technologies such as Terraform or AWS CDK.
  • Strong programming skills in Python, JavaScript/TypeScript, R, or other relevant scripting languages.
  • Experience with API development and integration, particularly JSON-based RESTful APIs.
  • Deep understanding of version control (Git), CI/CD best practices, and software development lifecycle (SDLC).
  • Ability to work cross-functionally in a multi-disciplinary environment with minimal supervision.
  • Strong problem-solving, analytical, and troubleshooting skills, with the ability to diagnose and resolve technical issues.
  • Excellent verbal and written communication skills in English, with the ability to translate technical concepts for non-technical stakeholders.

Preferred:
  • Experience in a clinical diagnostics or regulated environment (e.g., CLIA, CAP, IVDR, FDA) with knowledge of software validation and regulatory requirements.
  • Understanding of controlled processes, environment management, and quality control systems in a clinical setting.
  • Familiarity with DevOps methodologies.

Education:
  • Bachelor's Degree (Required)
  • Master's Degree (Preferred

About the Team
Quest Diagnostics honors our service members and encourages veterans to apply.
While we appreciate and value our staffing partners, we do not accept unsolicited resumes from agencies. Quest will not be responsible for paying agency fees for any individual as to whom an agency has sent an unsolicited resume.
Equal Opportunity Employer: Race/Color/Sex/Sexual Orientation/Gender Identity/Religion/National Origin/Disability/Vets or any other legally protected status.

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