ZipRecruiter

Log In

2

Healthcare Software Engineer Remote Jobs in Madison, WI

micro1 AI

Bioinformatics Software Engineer

Madison, WI · Remote

$80 - $110/hr

Remote micro1 is engaging Computational Biology & Cheminformatics Experts to contribute their expertise to a customer's computational drug discovery project. In this role, you'll apply your expertise ...

EnsoData

Staff Engineer - Full Stack

Madison, WI · On-site +1

Make Healthcare Better - is passionate about moving healthcare to a better place for everyone ... Hybrid/Remote Company - we are a company with hybrid and remote options. That being said, we have ...

Rural Mutual Insurance

Data Engineer

Madison, WI · On-site +1

$115K - $138K/yr

This is a remote position with periodic on-site presence required. Candidates must live and work in ... Committed to our employees and their families, we offer a suite of benefits promoting health and ...

Varsity Tutors

Software Tutor

Madison, WI · Remote

$18 - $40/hr

... take care of payments. What We Look For In a Software Tutor * Advanced Subject Mastery: Deep knowledge of software development methodologies, programming languages, version control, software ...

Progress

DevOps Engineer II

Madison, WI · On-site +1

$83K - $97K/yr

... health, and application performance. * Collaborate with engineering teams to integrate automation into the software development lifecycle. * Maintain, troubleshoot, and enhance application code in a

Progress

DevOps Engineer II

Madison, WI · On-site +1

... health, and application performance. * Collaborate with engineering teams to integrate automation into the software development lifecycle. * Maintain, troubleshoot, and enhance application code in a

Progress

DevOps Engineer II

Madison, WI · On-site +1

$83K - $97K/yr

... health, and application performance. * Collaborate with engineering teams to integrate automation into the software development lifecycle. * Maintain, troubleshoot, and enhance application code in a

Progress

DevOps Engineer II

Madison, WI · On-site +1

$83K - $97K/yr

... health, and application performance. * Collaborate with engineering teams to integrate automation into the software development lifecycle. * Maintain, troubleshoot, and enhance application code in a

Resource Innovations

Energy Engineer

Madison, WI · On-site +1

This position may be remote, with a preferred location in Illinois, Iowa, Massachusetts, New Jersey ... Training on the software platform will be provided. * Present and discuss findings with customers ...

Resource Innovations

Energy Engineer

Madison, WI · Remote

This position may be remote, with a preferred location in Illinois, Iowa, Massachusetts, New Jersey ... Training on the software platform will be provided. * Present and discuss findings with customers ...

Epic

Infrastructure Engineer

Madison, WI · On-site +1

$108K - $142K/yr

Infrastructure Engineer Power High-Reliability Healthcare Systems Design, build, coordinate, and ... Healthcare is global, and building the best ideas from around the world into Epic software is a ...

Yahara Software

Business Analyst

Madison, WI · On-site +1

This role works closely with software development engineers to understand, define, and translate ... Hybrid/remote schedule with home office stipend * Fresh fruit, healthy snacks, and beverages ...

previous pagenext page

Showing results 21-40

All JobsHealthcare Software Engineer JobsHealthcare Software Engineer Remote JobsHealthcare Software Engineer Remote Jobs in Madison, WI

Healthcare Software Engineer Remote information

See Madison, WI salary details

$64K

$148.6K

$207.1K

How much do healthcare software engineer remote jobs pay per year?

As of Aug 24, 2026, the average yearly pay for healthcare software engineer remote in Madison, WI is $148,649.00, according to ZipRecruiter salary data. Most workers in this role earn between $120,900.00 and $174,300.00 per year, depending on experience, location, and employer.

What does a healthcare software engineer do when working remotely?

A Healthcare Software Engineer working remotely designs, develops, and maintains software applications that support healthcare operations, such as electronic health records, telemedicine platforms, and medical data analytics. They collaborate with healthcare professionals and IT teams to ensure the software meets regulatory standards, privacy requirements, and user needs. Remote engineers leverage secure communication tools and project management platforms to work effectively from different locations while ensuring the security and integrity of sensitive health information.

What are the key skills and qualifications needed to thrive as a healthcare software engineer remote?

To thrive as a Healthcare Software Engineer (Remote), you need strong programming skills (such as Python, Java, or C#), a solid understanding of healthcare data standards (like HL7 or FHIR), and typically a degree in computer science or a related field. Familiarity with healthcare compliance systems (such as HIPAA), cloud platforms, and version control tools like Git is essential. Excellent problem-solving abilities, remote collaboration skills, and attention to detail help you stand out in this role. These skills ensure the secure, reliable, and compliant development of healthcare applications that support patient care and organizational goals.

What are some unique challenges healthcare software engineers face when working remotely, and how can they be addressed?

Healthcare Software Engineers working remotely often face the challenge of collaborating with cross-functional teams—including clinicians, compliance officers, and IT staff—while ensuring the security and privacy of sensitive patient data. Effective communication tools and clear documentation practices are essential to bridge any gaps due to physical distance. Additionally, staying current with healthcare regulations (like HIPAA) and integrating with legacy healthcare systems can be complex but is manageable through regular training and leveraging secure development environments. Establishing regular check-ins and using secure collaboration platforms help maintain both productivity and compliance in a remote setting.

Can a healthcare software engineer work in healthcare?

A healthcare software engineer designs and develops software solutions for healthcare organizations, making their work directly applicable to the healthcare industry. They often work on electronic health records, telemedicine platforms, or clinical applications, requiring knowledge of healthcare regulations and programming skills. Their role supports improving patient care and healthcare operations.

What are the most commonly searched types of Healthcare Software Engineer jobs in Madison, WI?

The most popular types of Healthcare Software Engineer jobs in Madison, WI are:

What are popular job titles related to Healthcare Software Engineer Remote jobs in Madison, WI?

For Healthcare Software Engineer Remote jobs in Madison, WI, the most frequently searched job titles are:

What job categories do people searching Healthcare Software Engineer Remote jobs in Madison, WI look for?

The top searched job categories for Healthcare Software Engineer Remote jobs in Madison, WI are:

Healthcare Software Engineer Remote jobs near you
Infographic showing various Healthcare Software Engineer Remote job openings in Madison, WI as of August 2026, with employment types broken down into 2% As Needed, 67% Full Time, 18% Part Time, and 13% Contract. Highlights an 94% Physical, 1% Hybrid, and 5% Remote job distribution, with an average salary of $148,649 per year, or $71.5 per hour.

Bioinformatics Software Engineer

micro1 AI

Madison, WI • Remote

$80 - $110/hr

Part-time

Posted 21 days ago

Job description

Role Title: Computational Biology & Cheminformatics Expert


Role Type: Contractor


Location: Remote


micro1 is engaging Computational Biology & Cheminformatics Experts to contribute their expertise to a customer’s computational drug discovery project. In this role, you'll apply your expertise to help train next-generation AI systems. Your work will shape how models learn, reason, and perform through high-quality, real-world input. No prior experience in AI is required — your domain knowledge is what matters.


Scope of Work

  1. Analyze and interpret small-molecule and drug discovery datasets using advanced computational biology, bioinformatics, and cheminformatics methods.
  2. Curate, annotate, and validate chemical and biological datasets (e.g., ChEMBL, PubChem, DrugBank) to support AI-driven discovery platforms.
  3. Evaluate compound-target interactions, ADMET properties, and lead optimization strategies by integrating chemical, biological, and clinical data sources.
  4. Provide expert insights on structure-activity and structure-property relationships (SAR/SPR), medicinal chemistry approaches, and experimental design considerations.
  5. Build and implement code-based benchmark tasks (e.g., terminal/CLI-based environments) that reflect realistic computational drug discovery scenarios.
  6. Develop reproducible environments (e.g., using Docker) and automated testing pipelines to ensure task correctness and solvability.
  7. Assess and review AI-generated outputs for scientific rigor, accuracy, and practical relevance, delivering detailed written feedback and recommendations.


Preferred Qualifications

  1. Advanced expertise in Computational Biology, Cheminformatics, Medicinal Chemistry, Biochemistry, or related fields; advanced degree (PhD, MSc, PharmD) highly valued but not strictly required.
  2. Strong coding proficiency in Python (beyond analysis scripts), with hands-on experience building tools, pipelines, or testable code; familiarity with Git, GitHub, and Docker.
  3. Extensive experience with cheminformatics toolkits and platforms such as RDKit, KNIME, Schrödinger, OpenEye, or MOE.
  4. Proven track record in small-molecule drug discovery, SAR/QSAR evaluation, ADMET prediction, or virtual screening workflows.
  5. Comfort working with public chemical and bioactivity databases and integrating diverse datasets for scientific analysis.
  6. Demonstrated ability to clearly communicate complex chemical and biological concepts in written feedback and reports.
  7. Experience participating in multidisciplinary and/or remote projects; familiarity with AI-assisted coding tools is a plus.

Apply