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Flow Cytometry Manager Jobs in Seattle, WA (NOW HIRING)

SystImmune, Inc

Director, Protein Engineering

Redmond, WA · On-site

$180K - $240K/yr

Use NGS, flow cytometry, and computational tools to inform iterative protein design and lead ... management, and career progression. * Demonstrated delivery of engineered binders or therapeutic ...

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All JobsFlow Cytometry JobsFlow Cytometry Manager JobsFlow Cytometry Manager Jobs in Seattle, WA

Flow Cytometry Manager information

See Seattle, WA salary details

$26.2K

$69.8K

$116.6K

How much do flow cytometry manager jobs pay per year?

As of Jul 29, 2026, the average yearly pay for flow cytometry manager in Seattle, WA is $69,818.00, according to ZipRecruiter salary data. Most workers in this role earn between $50,100.00 and $78,500.00 per year, depending on experience, location, and employer.

What is a Flow Cytometry Manager job?

A Flow Cytometry Manager oversees the daily operations of a flow cytometry laboratory, ensuring the proper use and maintenance of cytometry instruments. They manage staff, train researchers, and assist in data analysis for various experiments. The role involves troubleshooting technical issues, optimizing protocols, and ensuring compliance with safety and quality standards. Additionally, they may collaborate with scientists to develop and implement new flow cytometry techniques for research or clinical applications.

What are some common challenges faced by a Flow Cytometry Manager, and how can I prepare for them?

Flow Cytometry Managers often encounter challenges such as troubleshooting complex instrument issues, ensuring accurate data analysis, and maintaining high standards of quality control. You may also be responsible for managing a diverse team of technicians and scientists, scheduling instrument time efficiently, and keeping up with evolving regulatory or safety guidelines. To prepare for these challenges, strong problem-solving skills, ongoing professional development, and a proactive approach to team communication are essential. Gaining hands-on experience with different flow cytometry platforms and staying current with industry best practices can also help you excel in this role.

What are the key skills and qualifications needed to thrive in the Flow Cytometry Manager position, and why are they important?

To thrive as a Flow Cytometry Manager, you need advanced knowledge of flow cytometry techniques, cell sorting, laboratory management, and a background in life sciences, often supported by a relevant degree or higher. Proficiency with flow cytometry instruments (such as BD or Beckman Coulter systems), data analysis software, and possibly certifications like ASCP are typically required. Strong leadership, team management skills, and effective communication abilities make a candidate stand out in this position. These competencies ensure the laboratory runs smoothly, technical work meets quality standards, and the team is supported in achieving research and operational objectives.

What are the most commonly searched types of Flow Cytometry jobs in Seattle, WA? The most popular types of Flow Cytometry jobs in Seattle, WA are:
What are popular job titles related to Flow Cytometry Manager jobs in Seattle, WA? For Flow Cytometry Manager jobs in Seattle, WA, the most frequently searched job titles are:
What job categories do people searching Flow Cytometry Manager jobs in Seattle, WA look for? The top searched job categories for Flow Cytometry Manager jobs in Seattle, WA are:
What cities near Seattle, WA are hiring for Flow Cytometry Manager jobs? Cities near Seattle, WA with the most Flow Cytometry Manager job openings:
Flow Cytometry Manager jobs near you
Infographic showing various Flow Cytometry Manager job openings in Seattle, WA as of July 2026, with employment types broken down into 2% Locum Tenens, 1% As Needed, 85% Full Time, 7% Part Time, 4% Contract, and 1% Summer. Highlights an 97% Physical, and 3% Remote job distribution, with an average salary of $69,818 per year, or $33.6 per hour.
Immunology Senior Research Scientist - Flow Cytometry

Immunology Senior Research Scientist - Flow Cytometry

Vertex Pharmaceuticals

Seattle, WA • On-site

$124K - $186K/yr

Full-time

Medical, Dental, Vision, Retirement, PTO

Posted 22 days ago

Vertex Pharmaceuticals rating

6.5

Company rating: 6.5 out of 10

Based on 5 frontline employees who took The Breakroom Quiz

78th of 86 rated pharmaceutical

Job description

Job Description
Job Description
At Vertex, we invest in scientific innovation to create transformative medicines for people with serious diseases. Our growing Molecular Profiling team is seeking a Senior Scientist, Flow Cytometry to provide deep technical expertise in flow cytometry and cellular profiling to support discovery, translational, and development programs. This role will lead and drive the generation of high-dimensional insights into cell phenotype, function, and biology that help inform mechanism of action, biomarker strategies, patient stratification, and program decision-making.
The successful candidate will independently own cytometry workstreams across multiple programs and contribute to the scientific direction of molecular profiling efforts.
The ideal candidate is a highly motivated scientist with strong experience in multiparameter and high-dimensional flow cytometry (spectral flow), cell sorting, and immunophenotyping and a proven ability to thrive in a collaborative, fast-paced research environment.
Key Duties and Responsibilities
  • Design, develop, optimize, and execute flow cytometry-based assays to support research and translational objectives across discovery and development programs
  • Lead multicolor immunophenotyping panel design, including marker selection, fluorochrome strategy, controls, and advanced gating and data analysis approaches
  • Apply flow cytometry in conjunction with molecular profiling data to enable deeper characterization of cell states, pathway activity, target engagement, and disease-relevant biology
  • Partner with cross-functional teams to integrate cellular and molecular datasets, including transcriptomic, proteomic, and biomarker data, to support hypothesis generation and program strategy
  • Analyze and interpret complex flow cytometry data to support actionable biological insights, mechanism of action studies, and translational hypotheses
  • Establish and apply best practices for sample preparation, staining, acquisition, compensation, quality control, and data analysis
  • Troubleshoot technical issues and drive continuous improvement in assay robustness, reproducibility, and efficiency
  • Contribute to experimental design, study planning, and strategic program discussions and decision-making
  • Prepare technical documentation, protocols, study summaries, and presentations
  • Evaluate and implement emerging cytometry and profiling technologies, reagents, and workflows where appropriate
  • Mentor junior team members and serve as a scientific resource within the broader organization
  • Independently lead cytometry workstreams across multiple programs, ensuring alignment with program goals and timelines
  • Influence program decisions through data-driven insights and clear communication of complex biological findings

Knowledge and Skills
  • Deep expertise in flow cytometry principles, instrumentation, and assay development
  • Strong understanding of immune profiling, cellular phenotyping, and molecular profiling strategies
  • Experience connecting cell-based phenotypic data with broader molecular signatures and translational biomarkers
  • Experience designing and optimizing high-parameter or multicolor flow cytometry panels, including intracellular and phospho-flow analysis
  • Proficiency in flow cytometry analysis software such as FlowJo, Dotmatics or equivalent
  • Working knowledge of data analysis approaches and familiarity with R or Python-based workflows (preferred)
  • Strong scientific reasoning, data interpretation, and problem-solving skills
  • Ability to communicate complex technical findings clearly to technical and cross-functional stakeholders
  • Strong organizational skills and the ability to manage multiple priorities in a matrixed environment
  • Demonstrated ability to operate with a high degree of independence while contributing to team-based goals

Education and Experience
  • PhD in Immunology, Cell Biology, Molecular Biology, Biology, Biomedical Sciences, or related discipline with 2+ years of relevant experience; or
  • Master's degree with 6+ years of relevant experience; or
  • Bachelor's degree with 8+ years of relevant experience

Preferred Qualifications
  • Experience with primary human samples, including blood- or tissue-derived specimens
  • Familiarity with spectral flow cytometry and cell sorting (BD, Cytek, Sony platforms)
  • Experience working in environments where molecular profiling and cell-based assays are jointly used to answer translational questions
  • Experience in immunology and inflammation disease areas
  • Experience supporting translational research, biomarker strategies, or clinical development
  • Experience integrating cytometry data with single-cell genomics, spatial transcriptomics, or proteomics datasets

Pay Range:
$124,200 - $186,400
Disclosure Statement:
The range provided is based on what we believe is a reasonable estimate for the base salary pay range for this job at the time of posting. This role is eligible for an annual bonus and annual equity awards. Some roles may also be eligible for overtime pay, in accordance with federal and state requirements. Actual base salary pay will be based on a number of factors, including skills, competencies, experience, and other job-related factors permitted by law.
At Vertex, our Total Rewards offerings also include inclusive market-leading benefits to meet our employees wherever they are in their career, financial, family and wellbeing journey while providing flexibility and resources to support their growth and aspirations. From medical, dental and vision benefits to generous paid time off (including a week-long company shutdown in the Summer and the Winter), educational assistance programs including student loan repayment, a generous commuting subsidy, matching charitable donations, 401(k) and so much more.
Flex Designation:
On-Site Designated
Flex Eligibility Status:
In this On-Site designated role, you will work five days per week on-site with ad hoc flexibility.
Note: The Flex status for this position is subject to Vertex's Policy on Flex @ Vertex Program and may be changed at any time.
#LI-Onsite
Company Information
Vertex is a global biotechnology company that invests in scientific innovation.
Vertex is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person's race, color, sex, gender identity or expression, age, religion, national origin, ancestry, ethnicity, disability, veteran status, genetic information, sexual orientation, marital status, or any characteristic protected under applicable law. Vertex is an E-Verify Employer in the United States. Vertex will make reasonable accommodations for qualified individuals with known disabilities, in accordance with applicable law.
Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which the applicant has applied should make a request to the recruiter or hiring manager, or contact Talent Acquisition at ApplicationAssistance@vrtx.com

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