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Flow Cytometry Analyst Jobs in Seattle, WA (NOW HIRING)

Systimmune

Research Associate I/II I-O

Bothell, WA · On-site

$60K - $80K/yr

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

... flow cytometry, or MSD multiplex platforms. * Exposure to high-throughput research settings or regulated laboratory environments. * Strong data analysis software skills (e.g., GraphPad Prism, FlowJo ...

SystImmune, Inc

Research Associate I/II I-O

Bothell, WA · On-site

$60K - $80K/yr

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

... flow cytometry, or MSD multiplex platforms. * Exposure to high-throughput research settings or regulated laboratory environments. * Strong data analysis software skills (e.g., GraphPad Prism, FlowJo ...

Lyell Immunopharma

Quality Control Associate II

Bothell, WA · On-site

$75K/yr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Familiarity with software tools for flow cytometry data analysis (e.g. FCS Express). * Strong attention to detail, organizational skills, and ability to work independently on a fixed schedule (Weds ...

Lyell Immunopharma

Quality Control Associate II

Bothell, WA · On-site

$75K/yr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Familiarity with software tools for flow cytometry data analysis (e.g. FCS Express). * Strong attention to detail, organizational skills, and ability to work independently on a fixed schedule (Weds ...

BioLife Solutions, Inc.

Scientist I Biopreservation

Bothell, WA · On-site

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Flow cytometry * Cell viability and apoptosis assays * Metabolic and functional assays * Post-thaw recovery kinetics * Analyze experimental data and generate reports to guide protocol optimization ...

Bristol Myers Squibb

Associate Director, Data Science

Seattle, WA

$67K - $67K/yr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Oversee and execute data science analyses on datasets from BMS clinical trials and real-world data cohorts, spanning genomics, proteomics, imaging, flow cytometry, and other high-dimensional ...

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All JobsFlow Cytometry Analyst JobsFlow Cytometry Analyst Jobs in Seattle, WA

Flow Cytometry Analyst information

See Seattle, WA salary details

$40.4K

$112.8K

$144.5K

How much do flow cytometry analyst jobs pay per year?

As of Aug 18, 2026, the average yearly pay for flow cytometry analyst in Seattle, WA is $112,844.00, according to ZipRecruiter salary data. Most workers in this role earn between $81,900.00 and $144,000.00 per year, depending on experience, location, and employer.

What is a flow cytometry analyst?

A Flow Cytometry Analyst is responsible for operating and maintaining flow cytometry instruments to analyze cells and particles for research, clinical, or pharmaceutical applications. They prepare samples, optimize protocols, and interpret data to provide insights into cell populations and characteristics. Analysts often work in laboratories within biotechnology, healthcare, or academic settings. They ensure accuracy, troubleshoot technical issues, and collaborate with scientists to support experiments and diagnostics. Strong analytical skills and knowledge of immunology, cell biology, and data analysis are essential for this role.

What are the typical daily responsibilities of a flow cytometry analyst?

A Flow Cytometry Analyst is responsible for setting up and calibrating flow cytometers, preparing samples, acquiring data, and performing detailed analysis using specialized software. Daily tasks also include troubleshooting instrument issues, maintaining meticulous records, and collaborating with researchers or clinicians to interpret results. You’ll regularly interact with other laboratory staff to ensure experiments are performed accurately and data is shared promptly. The role often involves balancing multiple projects and adapting to changing experiment priorities, making organizational skills important. This hands-on, team-oriented work environment offers opportunities to learn from experts in immunology, oncology, and related fields.

What are the key skills and qualifications needed to thrive in the flow cytometry analyst position, and why are they important?

To thrive as a Flow Cytometry Analyst, you need a strong background in biology or related sciences, experience with laboratory techniques, and specific expertise in flow cytometry data analysis. Familiarity with analytical software such as FlowJo, BD FACSDiva, and cytometers like BD LSRFortessa or Beckman Coulter systems is typically expected, and certifications in cytometry or laboratory safety can be advantageous. Attention to detail, critical thinking, and effective teamwork are standout soft skills for this position. These abilities ensure accurate data analysis, reliable results, and seamless collaboration in a laboratory environment.

What are the most commonly searched types of Flow Cytometry Analyst jobs in Seattle, WA?

The most popular types of Flow Cytometry Analyst jobs in Seattle, WA are:

What are popular job titles related to Flow Cytometry Analyst jobs in Seattle, WA?

For Flow Cytometry Analyst jobs in Seattle, WA, the most frequently searched job titles are:

What job categories do people searching Flow Cytometry Analyst jobs in Seattle, WA look for?

The top searched job categories for Flow Cytometry Analyst jobs in Seattle, WA are:

Flow Cytometry Analyst jobs near you
Infographic showing various Flow Cytometry Analyst job openings in Seattle, WA as of August 2026, with employment types broken down into 1% As Needed, 81% Full Time, 14% Part Time, 3% Contract, and 1% Nights. Highlights an 94% Physical, 2% Hybrid, and 4% Remote job distribution, with an average salary of $112,844 per year, or $54.3 per hour.

Immunology Senior Research Scientist - Flow Cytometry

Vertex Pharmaceuticals

Seattle, WA • On-site

$124K - $186K/yr

Full-time

Medical, Dental, Vision, Retirement, PTO

Re-posted 13 days ago

Vertex Pharmaceuticals rating

6.5

Company rating: 6.5 out of 10

Based on 5 frontline employees who took The Breakroom Quiz

78th of 86 rated pharmaceutical

Job description

Job Description
Job Description
At Vertex, we invest in scientific innovation to create transformative medicines for people with serious diseases. Our growing Molecular Profiling team is seeking a Senior Scientist, Flow Cytometry to provide deep technical expertise in flow cytometry and cellular profiling to support discovery, translational, and development programs. This role will lead and drive the generation of high-dimensional insights into cell phenotype, function, and biology that help inform mechanism of action, biomarker strategies, patient stratification, and program decision-making.
The successful candidate will independently own cytometry workstreams across multiple programs and contribute to the scientific direction of molecular profiling efforts.
The ideal candidate is a highly motivated scientist with strong experience in multiparameter and high-dimensional flow cytometry (spectral flow), cell sorting, and immunophenotyping and a proven ability to thrive in a collaborative, fast-paced research environment.
Key Duties and Responsibilities
  • Design, develop, optimize, and execute flow cytometry-based assays to support research and translational objectives across discovery and development programs
  • Lead multicolor immunophenotyping panel design, including marker selection, fluorochrome strategy, controls, and advanced gating and data analysis approaches
  • Apply flow cytometry in conjunction with molecular profiling data to enable deeper characterization of cell states, pathway activity, target engagement, and disease-relevant biology
  • Partner with cross-functional teams to integrate cellular and molecular datasets, including transcriptomic, proteomic, and biomarker data, to support hypothesis generation and program strategy
  • Analyze and interpret complex flow cytometry data to support actionable biological insights, mechanism of action studies, and translational hypotheses
  • Establish and apply best practices for sample preparation, staining, acquisition, compensation, quality control, and data analysis
  • Troubleshoot technical issues and drive continuous improvement in assay robustness, reproducibility, and efficiency
  • Contribute to experimental design, study planning, and strategic program discussions and decision-making
  • Prepare technical documentation, protocols, study summaries, and presentations
  • Evaluate and implement emerging cytometry and profiling technologies, reagents, and workflows where appropriate
  • Mentor junior team members and serve as a scientific resource within the broader organization
  • Independently lead cytometry workstreams across multiple programs, ensuring alignment with program goals and timelines
  • Influence program decisions through data-driven insights and clear communication of complex biological findings

Knowledge and Skills
  • Deep expertise in flow cytometry principles, instrumentation, and assay development
  • Strong understanding of immune profiling, cellular phenotyping, and molecular profiling strategies
  • Experience connecting cell-based phenotypic data with broader molecular signatures and translational biomarkers
  • Experience designing and optimizing high-parameter or multicolor flow cytometry panels, including intracellular and phospho-flow analysis
  • Proficiency in flow cytometry analysis software such as FlowJo, Dotmatics or equivalent
  • Working knowledge of data analysis approaches and familiarity with R or Python-based workflows (preferred)
  • Strong scientific reasoning, data interpretation, and problem-solving skills
  • Ability to communicate complex technical findings clearly to technical and cross-functional stakeholders
  • Strong organizational skills and the ability to manage multiple priorities in a matrixed environment
  • Demonstrated ability to operate with a high degree of independence while contributing to team-based goals

Education and Experience
  • PhD in Immunology, Cell Biology, Molecular Biology, Biology, Biomedical Sciences, or related discipline with 2+ years of relevant experience; or
  • Master's degree with 6+ years of relevant experience; or
  • Bachelor's degree with 8+ years of relevant experience

Preferred Qualifications
  • Experience with primary human samples, including blood- or tissue-derived specimens
  • Familiarity with spectral flow cytometry and cell sorting (BD, Cytek, Sony platforms)
  • Experience working in environments where molecular profiling and cell-based assays are jointly used to answer translational questions
  • Experience in immunology and inflammation disease areas
  • Experience supporting translational research, biomarker strategies, or clinical development
  • Experience integrating cytometry data with single-cell genomics, spatial transcriptomics, or proteomics datasets

Pay Range:
$124,200 - $186,400
Disclosure Statement:
The range provided is based on what we believe is a reasonable estimate for the base salary pay range for this job at the time of posting. This role is eligible for an annual bonus and annual equity awards. Some roles may also be eligible for overtime pay, in accordance with federal and state requirements. Actual base salary pay will be based on a number of factors, including skills, competencies, experience, and other job-related factors permitted by law.
At Vertex, our Total Rewards offerings also include inclusive market-leading benefits to meet our employees wherever they are in their career, financial, family and wellbeing journey while providing flexibility and resources to support their growth and aspirations. From medical, dental and vision benefits to generous paid time off (including a week-long company shutdown in the Summer and the Winter), educational assistance programs including student loan repayment, a generous commuting subsidy, matching charitable donations, 401(k) and so much more.
Flex Designation:
On-Site Designated
Flex Eligibility Status:
In this On-Site designated role, you will work five days per week on-site with ad hoc flexibility.
Note: The Flex status for this position is subject to Vertex's Policy on Flex @ Vertex Program and may be changed at any time.
#LI-Onsite
Company Information
Vertex is a global biotechnology company that invests in scientific innovation.
Vertex is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person's race, color, sex, gender identity or expression, age, religion, national origin, ancestry, ethnicity, disability, veteran status, genetic information, sexual orientation, marital status, or any characteristic protected under applicable law. Vertex is an E-Verify Employer in the United States. Vertex will make reasonable accommodations for qualified individuals with known disabilities, in accordance with applicable law.
Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which the applicant has applied should make a request to the recruiter or hiring manager, or contact Talent Acquisition at ApplicationAssistance@vrtx.com

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