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Fermentation Engineer Jobs in New York (NOW HIRING)

System One

R&D Food Scientist

Paterson, NJ · On-site

$110K - $125K/yr

Bachelor's degree in Food Science, Baking Science, Food Technology, Food Engineering, or a related ... Hands-on experience with bakery processing operations, including mixing, fermentation, proofing ...

System One

Food Scientist - Dough Rheology

Paterson, NJ · On-site

$110K - $125K/yr

Bachelor's degree in Food Science, Baking Science, Food Technology, Food Engineering, or a related ... Hands-on experience with bakery processing operations, including mixing, fermentation, proofing ...

System One

R&D Food Scientist

Paterson, NJ · On-site

$110K - $125K/yr

Bachelor's degree in Food Science, Baking Science, Food Technology, Food Engineering, or a related ... Hands-on experience with bakery processing operations, including mixing, fermentation, proofing ...

System One

R&D Food Scientist

Paterson, NJ · On-site

$110K - $125K/yr

Bachelor's degree in Food Science, Baking Science, Food Technology, Food Engineering, or a related ... Hands-on experience with bakery processing operations, including mixing, fermentation, proofing ...

System One

Food Scientist - Dough Rheology

Paterson, NJ · On-site

$110K - $125K/yr

Bachelor's degree in Food Science, Baking Science, Food Technology, Food Engineering, or a related ... Hands-on experience with bakery processing operations, including mixing, fermentation, proofing ...

System One

R&D Food Scientist

Paterson, NJ · On-site

$110K - $125K/yr

Bachelor's degree in Food Science, Baking Science, Food Technology, Food Engineering, or a related ... Hands-on experience with bakery processing operations, including mixing, fermentation, proofing ...

System One

R&D Food Scientist

Paterson, NJ · On-site

$110K - $125K/yr

Bachelor's degree in Food Science, Baking Science, Food Technology, Food Engineering, or a related ... Hands-on experience with bakery processing operations, including mixing, fermentation, proofing ...

New York University

Post Doctorate Associate

New York, NY · On-site

$65K - $80K/yr

Description POSTDOCTORAL ASSOCIATE New York University Tandon School of Engineering The Gibbons Lab ... fermentation byproducts, is a plus. Familiarity with non-human animal model systems (e.g., germ ...

Iff

Technical Service Account Manager

New York, NY · On-site +1

... Engineering, or related) * 3-4 years of experience in an industrial biotechnology environment ... Handson experience supporting fermentation or enzymedriven industrial processes * Prior success in ...

Getinge

Territory Manager, Bioprocessing

Manhattan, NY · On-site

Successfully work in a team environment with primarily Field Service Technician, Engineers, Product ... Prefer a working knowledge of bioprocess and fermentation technology. Required Knowledge, Skills ...

Getinge

Territory Manager, Bioprocessing

New York, NY · On-site

Successfully work in a team environment with primarily Field Service Technician, Engineers, Product ... Prefer a working knowledge of bioprocess and fermentation technology. Required Knowledge, Skills ...

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Showing results 1-20

All JobsFermentation Engineer JobsFermentation Engineer Jobs in New York

Fermentation Engineer information

See New York salary details

$44.9K

$121.1K

$164.7K

How much do fermentation engineer jobs pay per year?

As of Aug 10, 2026, the average yearly pay for fermentation engineer in New York is $121,069.00, according to ZipRecruiter salary data. Most workers in this role earn between $99,000.00 and $161,400.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a fermentation engineer, and why are they important?

To thrive as a Fermentation Engineer, you need a solid background in bioprocess engineering, microbiology, and chemical engineering, often supported by a relevant degree. Familiarity with fermentation control systems, bioreactor operation, and analytical laboratory tools is typically required. Strong problem-solving, teamwork, and communication skills help you optimize processes and collaborate across multidisciplinary teams. These competencies are vital to ensure efficient, safe, and high-quality fermentation processes in industries like biotech, food, and pharmaceuticals.

What are the most common challenges faced by fermentation engineers in scaling up processes from lab to production?

Fermentation Engineers often encounter challenges when scaling up processes from laboratory to industrial scale, such as maintaining consistent product yields, ensuring robust microbial performance, and managing contamination risks. Differences in equipment, mixing, oxygen transfer, and temperature control can significantly impact the reproducibility and efficiency of fermentation. To address these challenges, engineers work closely with cross-functional teams, including microbiologists, process engineers, and quality assurance, to optimize protocols and implement rigorous monitoring systems throughout scale-up.

What does a fermentation engineer do?

A fermentation engineer uses state-of-the-art technologies to formulate new products and refine the processes used in existing ones. Your responsibilities in this career include setting up and testing a process involving a microorganism, such as a yeast or a bacterium, in a fermentor to create new products. You use biotechnology techniques like recombinant DNA technology. Your duties also involve operating sophisticated equipment, such as bioreactors or robots. You can find employment in a wide range of industries, from food production to agriculture to medical science.

What is the difference between Fermentation Engineer vs Microbiologist?

AspectFermentation EngineerMicrobiologist
Required CredentialsBachelor's in Bioengineering, Chemical Engineering, or related field; experience in fermentation processesBachelor's or higher in Microbiology, Biology, or related field; laboratory skills
Work EnvironmentIndustrial labs, manufacturing plants, R&D facilitiesResearch labs, clinical labs, academic institutions
Industry UsageBiotech, pharmaceuticals, food & beverage, biofuel productionHealthcare, research, environmental studies, food safety

Fermentation Engineers focus on designing, optimizing, and scaling fermentation processes in industrial settings, while Microbiologists primarily conduct research and analysis of microorganisms in laboratory environments. Both roles require a strong background in microbiology, but Fermentation Engineers emphasize process engineering and production, whereas Microbiologists focus on scientific study and experimentation.

More about Fermentation Engineer jobs
What are popular job titles related to Fermentation Engineer jobs in New York? For Fermentation Engineer jobs in New York, the most frequently searched job titles are:
What job categories do people searching Fermentation Engineer jobs in New York look for? The top searched job categories for Fermentation Engineer jobs in New York are:
What are popular job titles related to Fermentation Engineer jobs in NY? For Fermentation Engineer jobs in NY, the most frequently searched job titles are:
Fermentation Engineer jobs near you
Infographic showing various Fermentation Engineer job openings in New York as of July 2026, with employment types broken down into 90% Full Time, 3% Part Time, 2% Temporary, and 5% Contract. Highlights an 87% Physical, 4% Hybrid, and 9% Remote job distribution, with an average salary of $121,069 per year, or $58.2 per hour.

Upstream Process Development Scientist

Integrated Resources INC

South Plainfield, NJ

Full-time

Re-posted 21 days ago

Job description

Company Description

A Few Words About Us Integrated Resources, Inc is a premier staffing firm recognized as one of the tri-states most well-respected professional specialty firms. IRI has built its reputation on excellent service and integrity since its inception in 1996. Our mission centers on delivering only the best quality talent, the first time and every time. We provide quality resources in four specialty areas: Information Technology (IT), Clinical Research, Rehabilitation Therapy and Nursing.

Job Description
  • Design and execute experiments for production of proteins using microbial fermentation processes. Design, analyze and interpret lab experiments, purification data, in-process trends, productivity and quality attributes to support upstream process development. 
  • Lead efforts to evaluate different fermentation media, feeds, and feeding strategies to improve product yield and quality including proper folding of protein
  • Scale up process developed at research stage to manufacture adequate amounts of protein to support clinical trials
  • Author technical documentation including process validation protocols and reports. Evaluate process robustness, investigate causes of process variances, and take steps to maximize process reproducibility.


Qualifications
  • Ph.D., MS or BS in Chemical/Biochemical Engineering or related Biological Sciences is required. For a candidate with a Ph.D. >3 yrs. of industrial experience; candidate with an MS >5 yrs. industrial experience and for a candidate with a BS, >7 years of industrial experience in developing upstream microbial fermentation processes for the production of bio-pharmaceuticals is required. 
  • Specific experience in development of microbial expression processes for soluble protein production is preferred. Experience in development of mammalian cell culture processes for the production of recombinant proteins is a plus.
  • Knowledge of protein chemistry and purification techniques and purification process development experience is preferred. 
  • Basic knowledge of cGMP policies and procedures. Basic knowledge of regulatory requirements of the pharmaceutical / biotechnology industry. 


Additional Information





 

Integrated Resources logo

About Integrated Resources

Sourced by ZipRecruiter

Integrated Resources Inc (IRI), based in Edison, NJ, US, is an esteemed player in the staffing solutions industry with a credible presence on their official website irionline.com. Notably, IRI provides a range of professional staffing services including contract, contract-to-hire, and direct hire solutions to a wide spectrum of industries such as healthcare, life sciences, manufacturing, financial, insurance, and others. Since its inception, IRI has been committed to delivering top-talent and optimum solutions to meet its clients' diverse needs.

Industry

Recruiting and staffing services

Company size

51 - 200 Employees

Headquarters location

Edison, NJ, US

Year founded

1996

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