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Clinical Systems Analyst Jobs in Alabama (NOW HIRING)

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Clinical Systems Analyst information

See Alabama salary details

$49.9K

$85K

$120.5K

How much do clinical systems analyst jobs pay per year?

As of Sep 6, 2026, the average yearly pay for clinical systems analyst in Alabama is $85,037.00, according to ZipRecruiter salary data. Most workers in this role earn between $69,300.00 and $98,300.00 per year, depending on experience, location, and employer.

What is a clinical systems analyst?

A clinical systems analyst oversees the computer information systems at a hospital or other medical facility. As a clinical systems analyst, your job duties include the development of software applications to support hospital requirements, troubleshooting computer system issues, and testing changes to the facility's computer software. The qualifications to have a career as a clinical systems analyst include a bachelor’s degree in computer science and experience working in a medical setting.

What are the key skills and qualifications needed to thrive as a clinical systems analyst, and why are they important?

To thrive as a Clinical Systems Analyst, you need a solid background in healthcare IT, data analysis, and systems integration, often supported by a degree in health informatics or a related field. Familiarity with electronic health record (EHR) systems such as Epic or Cerner, as well as certifications like CPHIMS or experience with HL7 standards, is valuable. Strong problem-solving, communication, and project management skills help bridge the gap between clinical staff and IT teams. These skills ensure efficient implementation and optimization of clinical systems, ultimately improving patient care and organizational workflow.

How does a clinical systems analyst typically collaborate with healthcare providers to improve electronic health record (EHR) systems?

Clinical Systems Analysts work closely with physicians, nurses, and other healthcare staff to understand their workflow needs and address challenges with EHR systems. They gather user feedback, translate clinical requirements into technical specifications, and often participate in system customization, testing, and training sessions. Regular collaboration ensures that the EHR supports clinical processes efficiently, improves patient care, and complies with healthcare regulations. This role frequently involves cross-functional teamwork, including IT departments and clinical leadership, to drive continuous system improvements.

How much does a clinical systems analyst make?

The average salary for a clinical systems analyst is around $80,000 to $100,000 annually, depending on experience, certifications, and the healthcare setting. Salaries can vary based on location, with higher wages typically found in metropolitan areas and institutions requiring specialized knowledge of electronic health records (EHR) systems and healthcare IT tools.

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Infographic showing various Clinical Systems Analyst job openings in Alabama as of August 2026, with employment types broken down into 88% Full Time, 7% Part Time, 1% Temporary, 3% Contract, and 1% Nights. Highlights an 86% Physical, 2% Hybrid, and 12% Remote job distribution, with an average salary of $85,037 per year, or $40.9 per hour.

Clinical Application Analyst - Lab Focus

Encompass Health

Montevallo, AL • On-site

Other

Medical, Dental, Vision, Retirement, PTO

Posted 9 days ago


Key responsibilities

  • Support configuration, design, implementation, and troubleshooting of clinical applications related to lab and ancillary services.

  • Assist with system build, testing, training, and support for end users during project rollouts and system upgrades.

  • Support interface troubleshooting, perform workflow assessments, and serve as a subject matter expert on clinical system processes and content.


Encompass Health rating

7.0

Company rating: 7.0 out of 10

Based on 423 frontline employees who took The Breakroom Quiz

421st of 898 rated healthcare providers


Job description

Join in on the heart-warming journey with a team that is a top leader in the rehabilitation industry

Encompass Health is the leader in inpatient rehabilitation industry, you'll feel the Encompass Health difference as soon as you join. We collaborate and provide high-quality, compassionate, individualized care for our patients, allowing us time to get to know them and help them achieve their goals during their rehabilitation journey.

Position Purpose

The Clinical Application Analyst- Lab Focus provides support for configuration, design, implementation and troubleshooting for clinical applications. This position maintains the clinical information system, lab/ancillary clinical interfaces and assigned projects. This includes participating in all project roll out phases including onsite assessments, designing, building, testing, training and supporting end users. This position develops a comprehensive understanding of the application functionality, reporting capabilities, interfacing and integration associated with clinical applications assigned. The Ancillary Clinical Services Analyst is able to effectively engage with end users to train, analyze workflows, optimize user experience and promote adoption.

Responsibilities & Tasks

  • Is responsible for design and build of orderables/results/assays, service resource hierarchy, and ESH for both RLI and orders/results interfaces (Pathnet and Powerchart).

  • Is responsible for detailed build including caresets, codeset filtering, custom codesets, and OEFs and aliasing.

  • Is responsible for build, troubleshooting and maintenance of Pathnet functions to support onsite labs and RLI sites including Pathnet reports, QC Maintenance, TATMonitor, MDI audit and server status.

  • Assists with interface troubleshooting to identify issues and fix simple issues such as missing aliases for lab, radiology, and dietary interfaces.

  • Works with other team members to support partner changes, upgrades and cutovers.

  • Works in IT1000 to support Roche products and ongoing projects.

  • Trains end users and provides Go Live support.

  • Performs workflow assessments and completes DCWs on time to facilitate design processes.

  • Performs comprehensive testing of the clinical systems in both Prod and non-Prod environments.

  • Documents all activities and reports findings.

  • Participates in system upgrade activities.

  • Reviews and designs new functionality available, testing, and training.

  • Resolves clinical process and content issues associated with the clinical system implementation.

  • Serves a subject matter expert on the clinical system recommendations, processes, and content.

  • Understands and teaches clinical reporting solutions and options.

  • Contributes to needs analyses, uses design tools and develops training materials.

  • Leads and plans site education.

  • Participates in on-call rotation to provide ongoing support to end users.

  • Guides clinicians in solution demonstrations, design sessions, and end user training.

  • Effectively transfers knowledge to end users.

  • Serves as primary contact in the change management process for changes, testing and delivery.

  • Gathers data on performance metrics to facilitate review of system effectiveness/efficiency.

  • Takes the initiative to advance knowledge of solutions/applications.

  • Organizes, plans, and manages time effectively to complete assignments.

  • Demonstrates flexibility in transitioning between assigned task/duties including ACE IT Implementation, project work, end user training, design/development testing, troubleshooting, analysis of system adoption/use.

  • Promotes mutual support among colleagues and emphasizes knowledge sharing and success of the team.

  • This is a remote role that requires up to 80% travel

License or Certification:

  • Active clinical license preferred.

Minimum Qualifications:

  • Associate's degree in Microbiology, Nursing, Medical Laboratory Science or related field; Bachelor's degree preferred.

  • 2-5 years experience as LIS analyst in a facility or with a vendor. Rehab experience preferred

  • Experience working in Electronic Health Record environment is preferred.

  • Experience in accessing workflow effectively (preferred understanding of rehabilitation workflow).

  • 1-3 years of experience implementing an EMR in an inpatient or ambulatory care setting

  • Experience in complex healthcare technology implementations or experience a plus.

A little about us

We're confident you'll see the difference the moment you join our team. Working at Encompass Health means working with a growing national inpatient rehabilitation leader. We're proud of our career growth opportunities and how our team members work together for the greater good of our patients. We've been named one of the "World's Most Admired Companies" and a Fortune 100 Best Companies to Work For® Award, among others, which is pretty amazing.

Our benefits start day one

  • Affordable medical, dental and vision plans for full-time and part-time employees and their families.
  • Generous paid time off that accrues over time.
  • Tuition reimbursement and continuing education opportunities.
  • Company-matching 401(k) and employee stock purchase plans.
  • Flexible spending and health savings accounts.
  • A community of people who love what they do. Yes, we see that as a benefit.
The Encompass Health Way
We proudly set the standard in care by leading with empathy, doing what's right, focusing on the positive, and standing stronger together. Encompass Health is a trusted leader in post-acute care with over 150 nationwide locations and a team of 36,000 exceptional individuals and growing!
At Encompass Health, we celebrate and welcome diversity in our inclusive culture. We provide equal employment opportunities regardless of race, ethnicity, gender, sexual orientation, gender identity or expression, religion, national origin, color, creed, age, mental or physical disability, or any other protected classification.

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About Encompass Health

Sourced by ZipRecruiter

Helping patients regain hope and independence, Encompass Health is a national leader in post-acute care. We operate rehabilitation hospitals in 36 states as well as Puerto Rico. Following the Encompass Way, we are driven by our core values: We proudly set the standard, lead with empathy, do what's right, focus on the positive, and remain stronger together.

Industry

Hospitals and outpatient health care

Company size

10,000+ Employees

Headquarters location

Birmingham, AL, US