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Clinical Application System Administrator Jobs (NOW HIRING)

System One

System Administrator

Annapolis Junction, MD · On-site

$150K/yr

System Administrator - TS/SCI w/ Polygraph Location: Annapolis Junction, MD Work Model: 100% Onsite ... Troubleshoot operating system and application issues in complex environments * Write and maintain ...

Entarian

System Administrator

Honolulu, HI · On-site

$65K - $120K/yr

Provide system administration, system integration, and application support for DFC mission systems ... Administer and maintain VMware virtual environments, including vCenter Server Appliances and ESXi ...

System One

System Administrator

Annapolis Junction, MD · On-site

$150K/yr

System Administrator - TS/SCI w/ Polygraph Location: Annapolis Junction, MD Work Model: 100% Onsite ... Troubleshoot operating system and application issues in complex environments * Write and maintain ...

System One

System Administrator

Annapolis Junction, MD · On-site

$150K/yr

System Administrator - TS/SCI w/ Full Scope Polygraph (FSP) Location: Annapolis Junction, MD Work ... Troubleshoot operating system and application issues in complex environments * Write and maintain ...

System One

System Administrator

Annapolis Junction, MD · On-site

$150K/yr

System Administrator - TS/SCI w/ Full Scope Polygraph (FSP) Location: Annapolis Junction, MD Work ... Troubleshoot operating system and application issues in complex environments * Write and maintain ...

System One

System Administrator

Annapolis Junction, MD · On-site

$150K/yr

System Administrator - TS/SCI w/ Full Scope Polygraph (FSP) Location: Annapolis Junction, MD Work ... Troubleshoot operating system and application issues in complex environments * Write and maintain ...

System One

System Administrator

Annapolis Junction, MD · On-site

$150K/yr

System Administrator - TS/SCI w/ Full Scope Polygraph (FSP) Location: Annapolis Junction, MD Work ... Troubleshoot operating system and application issues in complex environments * Write and maintain ...

System One

System Administrator

Annapolis Junction, MD · On-site

$150K/yr

System Administrator - TS/SCI w/ Full Scope Polygraph (FSP) Location: Annapolis Junction, MD Work ... Troubleshoot operating system and application issues in complex environments * Write and maintain ...

System One

System Administrator

Jessup, MD · On-site

$150K/yr

System Administrator - TS/SCI w/ Full Scope Polygraph (FSP) Location: Annapolis Junction, MD Work ... Troubleshoot operating system and application issues in complex environments * Write and maintain ...

System One

System Administrator

Annapolis Junction, MD · On-site

$150K/yr

System Administrator - TS/SCI w/ Full Scope Polygraph (FSP) Location: Annapolis Junction, MD Work ... Troubleshoot operating system and application issues in complex environments * Write and maintain ...

Hirekeyz Inc

System Administrator

Andrews, MD · On-site

This role is responsible for administering, maintaining, and supporting the infrastructure and application environments supporting the CMTARS platform. The System Administrator will manage system ...

OCVIBE

Venue Application Systems Administrator

Anaheim, CA · On-site

$100K - $120K/yr

Venue Application Systems Administrator Pay Details: The annual base salary range for this position ... This role is responsible for user roles and permissions, system configuration, vendor support cases ...

New

Navisoft

System Administrator

Tampa, FL · On-site

Knowledge of application packaging or image management using MDT System Administrator We are looking for a skilled System Administrator with experience in managing desktops, servers, networks, and ...

New

CIBR Force

System Administrator

Chantilly, VA · On-site

$130K/yr

... and application logs, and verifying completion of scheduled jobs such as backups · Applying ... system administrator experience · Minimum DOD 8140/DOD 8570 IAT Level I Certification · ...

The AES Group

System Administrator

Fort Belvoir, VA · On-site

Administer physical and virtual server infrastructure, including storage systems, application servers, backup environments, and related enterprise platforms. * Participate in infrastructure design ...

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Clinical Application System Administrator information

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$169.5K

How much do clinical application system administrator jobs pay per year?

As of Sep 12, 2026, the average yearly pay for clinical application system administrator in the United States is $97,965.00, according to ZipRecruiter salary data. Most workers in this role earn between $77,500.00 and $104,000.00 per year, depending on experience, location, and employer.

What does a clinical application system administrator do?

A Clinical Application System Administrator manages and supports the software systems used in healthcare settings, such as electronic health records (EHR) and clinical information systems. They are responsible for installing, configuring, maintaining, and troubleshooting these applications to ensure they run efficiently and securely. Additionally, they work closely with clinicians and IT teams to customize systems according to clinical workflow needs, provide user support and training, and ensure compliance with healthcare regulations. Their role is crucial in maintaining data integrity, system uptime, and patient care quality.

What are the key skills and qualifications needed to thrive as a clinical application system administrator?

To excel as a Clinical Application System Administrator, you need in-depth knowledge of healthcare IT systems, clinical workflows, and a background in computer science or information technology. Familiarity with electronic health records (EHR) platforms like Epic or Cerner, database management, and relevant certifications such as CompTIA Healthcare IT Technician are typically required. Strong analytical skills, attention to detail, and effective communication help you troubleshoot issues and collaborate with clinical staff. These competencies ensure seamless technology integration, minimize disruptions in patient care, and support regulatory compliance within healthcare environments.

What are some common challenges faced by clinical application system administrators, and how can they be addressed?

Clinical Application System Administrators often encounter challenges such as integrating new healthcare software with existing systems, managing system downtimes, and ensuring compliance with healthcare regulations like HIPAA. Addressing these challenges requires strong problem-solving skills, proactive communication with clinical staff, and regular system updates and testing. Administrators also benefit from ongoing training and collaboration with IT and clinical teams to ensure smooth workflows and data security.

What is the difference between Clinical Application System Administrator vs Clinical Data Analyst?

AspectClinical Application System AdministratorClinical Data Analyst
CredentialsIT certifications, healthcare IT experienceData analysis certifications, healthcare data experience
Work EnvironmentHealthcare IT departments, hospitals, clinicsResearch institutions, healthcare organizations, hospitals
Employer & Industry UsageHospitals, clinics, healthcare IT vendorsHealthcare providers, research centers, analytics firms
Search & Comparison IntentUnderstanding IT roles in healthcare systemsAnalyzing healthcare data and reporting

The Clinical Application System Administrator primarily manages and maintains healthcare software systems, ensuring smooth operation and security. In contrast, the Clinical Data Analyst focuses on interpreting healthcare data to support clinical decisions and research. Both roles are vital in healthcare IT but serve different functions within the industry.

What are popular job titles related to Clinical Application System Administrator jobs?

For Clinical Application System Administrator jobs, the most frequently searched job titles are:

Infographic showing various Clinical Application System Administrator job openings in the United States as of August 2026, with employment types broken down into 1% As Needed, 84% Full Time, 12% Part Time, and 3% Contract. Highlights an 92% Physical, 2% Hybrid, and 6% Remote job distribution, with an average salary of $97,965 per year, or $47.1 per hour.

System Administrator

Annapolis Junction, MD • On-site

System One
Business Consulting Services • 5 - 10K employees
Learn more about System Oneexternal

$150K/yr

Other

Medical, Dental, Vision, Life, Retirement

Re-posted 22 days ago

Job description

System Administrator – TS/SCI w/ Polygraph

Location: Annapolis Junction, MD Work Model: 100% Onsite Type: Direct Hire (W2) Compensation: Up to $150,000/year Schedule: 40 hours/week Clearance Required: Active TS/SCI with Polygraph (required)

About the Role

We’re hiring System Administrators at multiple experience levels to support mission-critical operations in Linux-based, high-performance environments. This role is ideal for someone who enjoys hands-on troubleshooting, optimizing system performance, and working closely with engineering and operations teams to keep essential infrastructure reliable and available.

This team includes professionals who specialize in platform, network, and storage engineering—but everyone is expected to contribute to core Linux system administration and operational sustainment work.

What You’ll Do

  • Monitor, maintain, and troubleshoot systems and infrastructure supporting mission operations
  • Install, configure, and administer Linux operating systems and applications
  • Manage file systems, networking services, and system resources
  • Troubleshoot operating system and application issues in complex environments
  • Write and maintain Bash scripts to automate administrative tasks
  • Compile, install, configure, and support software applications
  • Support automation and configuration management initiatives
  • Collaborate with engineering/operations teams to resolve issues and improve performance
  • Document configurations, procedures, and troubleshooting steps
  • Participate in upgrades, maintenance windows, and operational support activities

Required Qualifications

  • Active TS/SCI with Polygraph
  • Linux administration experience with one or more of the following:
    • RHEL, CentOS, Rocky Linux, SLES, Ubuntu
  • Experience with:
    • Linux installation/configuration
    • File system administration
    • TCP/IP networking fundamentals
    • OS and application troubleshooting
    • Bash scripting
    • Software compilation and installation
  • Strong analytical troubleshooting skills and ability to work both independently and on a team

Nice to Have (Strongly Preferred)

  • Exposure to or understanding of High-Performance Computing (HPC) environments
  • Experience supporting large-scale enterprise or mission-critical infrastructure
  • Familiarity with high-speed networking such as InfiniBand and/or Slingshot
  • Tools/Platforms:
    • Jira, Confluence, Grafana, Prometheus, Nagios, Slurm, Git, Salt, Ansible

Storage / Networking Experience (A Plus)

If you have a background in storage, networking, or infrastructure engineering, you’re highly encouraged to apply.

Storage technologies (preferred):

  • Lustre configuration/administration/troubleshooting
  • DDN Exascaler appliances
  • Storage fabric design/support
  • Storage performance tuning/optimization

Networking technologies (preferred):

  • Enterprise routing/switching (Cisco / Juniper / Arista)

Bonus (emerging tech exposure):

  • E1000 Storage Systems, ESNs, DAOS, Weka

Benchmarking/diagnostics tools:

  • IOR, iperf, FIO, lnet_selftest

System One, and its subsidiaries including Joulé and Mountain Ltd., are leaders in delivering outsourced services and workforce solutions across North America. We help clients get work done more efficiently and economically, without compromising quality. System One not only serves as a valued partner for our clients, but we offer eligible employees health and welfare benefits coverage options including medical, dental, vision, spending accounts, life insurance, voluntary plans, as well as participation in a 401(k) plan.

System One is an Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex (including pregnancy, childbirth, or related medical conditions), sexual orientation, gender identity, age, national origin, disability, family care or medical leave status, genetic information, veteran status, marital status, or any other characteristic protected by applicable federal, state, or local law.

#M-1

Ref: #851-Rockville-S1

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About System One

Sourced by ZipRecruiter

System One helps employers get work done more efficiently and economically without compromising quality. Over our 35+ year history, we've helped connect thousands of talented people with innovative companies. The excitement of a perfect fit motivates us every single day.

Industry

Business consulting services and recruiting and staffing services

Company size

5,001 - 10,000 Employees

Headquarters location

Pittsburgh, PA, US

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