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Cerner Systems Engineer Jobs (NOW HIRING)

Avo

Software Engineer - Integrations Team

Manhattan, NY · On-site

$150K - $200K/yr

You will build and maintain the connections between Avo and the EHR systems used by our hospital ... FHIR R4, HL7 v2, Epic App Orchard, Cerner SMART on FHIR Infrastructure: AWS (ECS/ECR), GitHub ...

Avo

Software Engineer - Integrations Team

Richmond, VA · On-site

$150K - $200K/yr

You will build and maintain the connections between Avo and the EHR systems used by our hospital ... FHIR R4, HL7 v2, Epic App Orchard, Cerner SMART on FHIR Infrastructure: AWS (ECS/ECR), GitHub ...

SV Tech Systems Inc

SQL Interface Developer

Charlotte, NC

$44.25 - $60.50/hr

... systems (such as Epic and Cerner) in both hospital and ambulatory environments. This position works closely with Software Engineering, to refine our connector processes and with Operations to refine ...

IGEL Technology GmbH

Enterprise Healthcare SE

$109K - $136K/yr

Healthcare Sales Engineer - Enterprise (>10k employees) Region: United States (Remote with ... Familiarity with Imprivata, Epic, Cerner, and other clinical applications. * Experience with IGEL ...

Avo

Software Engineer - Integrations Team

New York, NY

$150K - $200K/yr

You will build and maintain the connections between Avo and the EHR systems used by our hospital ... Build and maintain integrations with Epic, Cerner, and other major EHR platforms using FHIR, HL7 ...

Miller Cooper

Integrations Engineer

Chicago, IL · Remote

$107K - $144K/yr

Integrations Engineer Are you ready to join a cutting-edge healthcare startup dedicated to ... systems. * Work with Epic, Cerner, and other EHR platforms using HL7 and FHIR. * Work in an ...

Guru Schools

Mirth Integration Engineer/Developer

Reston, VA · On-site

$108K - $145K/yr

... System Modernization (DHMSM) program in Vienna, VA, providing the modernization of Electronic ... Leidos, along with core partners Cerner, Accenture, and Henry Schein, will support the DHMSM ...

UHS

Software Engineer I

King Of Prussia, PA · On-site

Supports existing Cerner and UHS clinical applications, including upgrade implementations and ... Designs, develops and implements custom clinical system enhancements to meet user needs in ...

UHS

Software Engineer I

King Of Prussia, PA

Supports existing Cerner and UHS clinical applications, including upgrade implementations and ... Designs, develops and implements custom clinical system enhancements to meet user needs in ...

Layer Health

EHR Integration Engineer

Boston, NY · On-site

$140K - $160K/yr

... Health and various EHR systems (EPIC, Cerner, PACS, Cardiovascular systems, LIS, etc ... Strong Python programming skills. * Strong knowledge of healthcare interoperability standards ...

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Cerner Systems Engineer information

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$53.5K

$127.2K

$167K

How much do cerner systems engineer jobs pay per year?

As of Jun 6, 2026, the average yearly pay for cerner systems engineer in the United States is $127,215.00, according to ZipRecruiter salary data. Most workers in this role earn between $98,000.00 and $157,000.00 per year, depending on experience, location, and employer.

What is a Cerner Systems Engineer?

A Cerner Systems Engineer is an IT professional who specializes in designing, implementing, and maintaining Cerner healthcare information systems within hospitals and healthcare organizations. Their responsibilities include configuring servers, ensuring system reliability, troubleshooting technical issues, and supporting the integration of Cerner applications with other healthcare technologies. They work closely with clinical and IT teams to ensure that Cerner systems are secure, efficient, and meet the needs of healthcare providers. Expertise in server administration, network management, and healthcare compliance is essential for this role.

What is the difference between Cerner Systems Engineer vs Cerner Analyst?

AspectCerner Systems EngineerCerner Analyst
Required CertificationsCertifications in Cerner systems, IT, or healthcare ITCertifications in Cerner, healthcare informatics, or related fields
Work EnvironmentIT departments, healthcare facilities, technical support teamsClinical settings, healthcare organizations, data analysis teams
Employer & Industry UsageHospitals, clinics, healthcare IT vendorsHospitals, health systems, healthcare consulting firms
Common Search & ComparisonYesYes

The Cerner Systems Engineer focuses on implementing, maintaining, and troubleshooting Cerner healthcare IT systems, often with a technical and IT background. The Cerner Analyst primarily analyzes clinical data, supports system optimization, and works closely with healthcare providers. Both roles require Cerner certifications and are vital in healthcare IT environments, but they differ in technical depth and clinical involvement.

What are the key skills and qualifications needed to thrive as a Cerner Systems Engineer, and why are they important?

To thrive as a Cerner Systems Engineer, you need a solid background in information technology, server administration, and healthcare IT systems, often supported by a degree in computer science or a related field. Familiarity with Cerner Millennium platforms, virtualization tools, Windows and Linux servers, and relevant certifications like Cerner Certified Professional or Microsoft certifications is highly beneficial. Strong problem-solving, communication, and project management skills help you excel in collaborating with clinical and technical teams. These skills ensure reliable system performance, efficient troubleshooting, and optimal support for healthcare operations.

How does a Cerner Systems Engineer typically collaborate with clinical and IT teams to ensure system reliability?

Cerner Systems Engineers work closely with both clinical staff and IT professionals to maintain and optimize the performance of Cerner's healthcare information systems. They often participate in cross-functional meetings to gather requirements, troubleshoot issues, and implement updates or customizations. Effective communication and collaboration are key, as engineers must translate clinical needs into technical solutions while ensuring minimal disruption to patient care. Regular coordination with these teams helps proactively identify potential system concerns and supports swift resolution, contributing to a reliable and user-friendly experience for all stakeholders.
More about Cerner Systems Engineer jobs
What are the most commonly searched types of Cerner Systems Engineer jobs? The most popular types of Cerner Systems Engineer jobs are:
What job categories do people searching Cerner Systems Engineer jobs look for? The top searched job categories for Cerner Systems Engineer jobs are:
Cerner Systems Engineer jobs near you
Senior Application Systems Analyst

Senior Application Systems Analyst

LifeBridge Health

Baltimore, MD • Remote

Full-time

Posted 3 hours ago

LifeBridge Health rating

6.3

Company rating: 6.3 out of 10

Based on 76 frontline employees who took The Breakroom Quiz

662nd of 867 rated healthcare providers

Job description

Who We Are:
LifeBridge Health is a dynamic, purpose-driven health system redefining care delivery across the mid-Atlantic and beyond, anchored by our mission to “improve the health of people in the communities we serve.” Join us to advance health access, elevate patient experiences, and contribute to a system that values bold ideas and community-centered care.
Job Summary: Working primarily independently with direction from the manager while referring appropriately to the manager, the senior application system analyst is responsible for the implementation, enhancement and support of business, clinical or financial applications deployed throughout the system, following standard departmental processes, especially change control and use of the issue/request tracking system.  The system analyst should exhibit customer service skills necessary to provide ongoing telephone support for end users.

Technical skills:

  • Deep understanding of the Athena/IDX professional billing system, including charge capture, claims processing, reimbursement workflows, working with outside vendors (vendor management), and payment posting.
  • Strong understanding of Athena/IDX database management system (DBMS), including data structures, tables, and system configuration.
  • Proficiency in SQL and data extraction tools for reporting and analysis.
  • Familiarity with integration between Cerner Millennium (registration, scheduling, clinical systems, and facility billing) and Athena/IDX professional billing workflows.
  • Understanding of revenue cycle workflows across both facility (Cerner Millennium) and professional billing (Athena/IDX) environments.
  • Ability to troubleshoot Athena/IDX applications, resolve system issues, and optimize financial and operational workflows.
  • Knowledge of interface development and integration (HL7, APIs, flat files) with third-party systems.
  • Experience with reporting tools and data analysis to support operational and financial decision-making.
  • AES programming experience (Athena Enterprise System) is a plus.

Healthcare Revenue Cycle & Compliance

  • In-depth understanding of physician (professional) billing, charge capture, payment reconciliation, claims adjudication, and denial management.
  • Strong understanding of end-to-end revenue cycle workflows, including alignment between Athena/IDX professional billing and Cerner Millennium facility billing.
  • Familiarity with Maryland regulations, Health Services Cost Review Commission (HSCRC).
  • Knowledge of HIPAA, Medicare/Medicaid, payer regulations, ICD-10, CPT coding, and other healthcare compliance standards.
  • Understanding of reimbursement methodologies and denial prevention strategies across professional billing.
  • Familiarity with hospital billing workflows and integration points is a plus.
  • Familiarity with Epic, Meditech, or other EHR revenue cycle systems is a plus.

Leadership

  • Experience in leading implementations, system upgrades, and optimizations within Athena/IDX or similar professional billing systems.
  • Ability to manage cross-functional teams, working with finance, IT, clinical departments, and revenue cycle stakeholders (PDI, PFS, Charge Services).
  • Strong analytical and problem-solving skills to optimize revenue cycle workflows and financial reporting.
  • Effective communication and documentation skills, with the ability to train end-users and stakeholders.
  • Ability to work closely with teams supporting Cerner Millennium to ensure alignment across systems and workflows.
  • Experience with project management methodologies (Agile, Waterfall, PMP preferred).

Certifications – Preferred, but not required

  • Relevant certifications in healthcare IT, Athena/IDX, database management, or revenue cycle systems.
  • SQL or data analytics certifications are a plus.
  • Project Management Professional (PMP) or equivalent is a plus.


REQUIREMENTS

  • Required Bachelor's Degree 
  • 2-4 years experienced preferred

Acceptable remote location: Alaska, Arizona, Arkansas, District of Columbia, Florida, Georgia, Idaho, Illinois, Louisiana, Maryland, Mississippi, Montana, Nebraska, New Mexico, North Carolina, North Dakota, Oklahoma, Pennsylvania, South Carolina, South Dakota, Tennessee, Texas, Utah, Virginia, West Virginia, Wisconsin, and Wyoming.

What LifeBridge Health employees say

Pay

Benefits

Hours and flexibility

Workplace

Get the full story on Breakroom

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About LifeBridge Health

Sourced by ZipRecruiter

LifeBridge Health is a $2B, 13,000 team member healthcare system that Cares Bravely for over 1 million patients annually throughout Maryland. We are comprised of 5 main healthcare centers: Sinai Hospital, Northwest Hospital, Carroll Hospital, Levindale Hebrew Geriatric Center and Hospital, and Grace Medical Center as well as several specialty and primary care locations throughout Baltimore.

Industry

Health care and social assistance

Company size

5,001 - 10,000 Employees

Headquarters location

Baltimore, MD, US

Year founded

1988

Social media

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