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Biomedical Software Engineer Jobs in Indiana (NOW HIRING)

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Biomedical Software Engineer information

See Indiana salary details

$60.4K

$140.4K

$195.5K

How much do biomedical software engineer jobs pay per year?

As of Jun 20, 2026, the average yearly pay for biomedical software engineer in Indiana is $140,378.00, according to ZipRecruiter salary data. Most workers in this role earn between $114,200.00 and $164,600.00 per year, depending on experience, location, and employer.

What are some typical projects or responsibilities for a Biomedical Software Engineer?

Biomedical Software Engineers often work on designing, developing, and maintaining software used in medical devices, clinical diagnostics, or healthcare information systems. Typical responsibilities include coding new features, troubleshooting and resolving software issues, ensuring compliance with medical standards, and participating in quality assurance testing. You may also collaborate closely with clinicians, researchers, and regulatory specialists to align technological solutions with user needs and safety requirements. These projects frequently involve iterative development and rigorous validation to ensure reliability in real-world medical settings.

What is a Biomedical Software Engineer job?

A Biomedical Software Engineer develops software solutions for medical and healthcare applications, including medical devices, diagnostic tools, and research simulations. They combine biomedical knowledge with software development skills to create and maintain systems that improve patient care, enhance medical research, and ensure regulatory compliance. Their work often involves programming, data analysis, and collaboration with healthcare professionals and researchers.

What are the key skills and qualifications needed to thrive in the Biomedical Software Engineer position, and why are they important?

To thrive as a Biomedical Software Engineer, you need a strong background in computer science, biomedical engineering, and software development—often supported by a bachelor's or master's degree in a related field. Proficiency with programming languages such as Python, C++, or Java, familiarity with medical imaging tools, and experience working with healthcare interoperability standards like HL7 or DICOM are typically required. Effective communication, teamwork, and problem-solving skills are crucial for collaborating with cross-functional teams and understanding user requirements. These competencies ensure that biomedical software solutions are safe, compliant, and meet the complex needs of healthcare environments.

What cities in Indiana are hiring for Biomedical Software Engineer jobs? Cities in Indiana with the most Biomedical Software Engineer job openings:
Infographic showing various Biomedical Software Engineer job openings in Indiana as of June 2026, with employment types broken down into 87% Full Time, 4% Part Time, 1% Temporary, and 8% Contract. Highlights an 85% Physical, 4% Hybrid, and 11% Remote job distribution, with an average salary of $140,378 per year, or $67.5 per hour.
Director/ Senior Director / Executive Director - Translational PKPD Project Leader

Director/ Senior Director / Executive Director - Translational PKPD Project Leader

Lilly

Indianapolis, IN • On-site

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

This job post has expired today. Applications are no longer accepted.


Eli Lilly and Company rating

8.8

Company rating: 8.8 out of 10

Based on 62 frontline employees who took The Breakroom Quiz

10th of 71 rated pharmaceutical


Job description

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities through philanthropy and volunteerism. We give our best effort to our work, and we put people first. We're looking for people who are determined to make life better for people around the world.

Eli Lilly and Company is committed to using its innovation-based strategy to discover, develop and deliver innovative medicines that help improve the lives of people. In support of this goal, the Pharmacokinetics/ Pharmacodynamics and Pharmacometrics, (PMx) organization provides leadership and technical expertise to support the discovery and development of new medicines from preclinical lead molecule identification to clinical post-drug approval, with the goal of identifying and developing the right drug with the right dose for the right patient using model-informed drug research and development (MIDD) approaches. To further advance the science in this field, we are seeking a scientific director who is experienced in mechanistic PK, PK/PD, and/or PBPK modeling of novel modalities.

We are passionate about making an impact in the lives of our patients, developing people to their full potential, and pushing the boundaries of science. Consider joining Team Lilly to contribute to Lilly's drug discovery and development efforts.

Key Responsibilities:

  • Serve as the Discovery PKPD project leader for genetic medicines programs, including ASOs, siRNA, LNP-mediated delivery, gene therapy (AAV and non-viral vectors), and antibody-siRNA conjugates (ARC).
  • Develop and implement modeling strategies that enhance decision-making for genetic medicines inform translational research strategies.
  • Design, analyze, and interpret quantitative pharmacology and PK/PD studies.
  • Collaborate effectively with scientists within and outside the functional area to integrate PK/PD into team strategy and contribute to project team discussions, guiding key go/no-go decisions with quantitative approaches.
  • Communicate quantitative findings both internally and externally through scientific publications, conference presentations, and cross-functional forums.
  • Mentor junior scientists and contribute to the growth of PKPD modeling capabilities within the genetic medicines space and neuroscience space.

Basic Qualifications:

  • PhD in Pharmacokinetics/Pharmacodynamics, Pharmacology, Pharmaceutical Sciences, Biomedical engineering, or a related subject area with experience applying quantitative approaches, with at 5 or more years of relevant industry or CRO experience in translational and/or mechanistic PKPD modeling.
  • Experience with empirical or mechanistic PK/PD modeling to support drug discovery and/or development.
  • Experience with DMPK and translational PK/PD modeling to support interspecies scaling, human dose projections, and first-in-human study design.
  • Experience with relevant modeling and simulation software such as NONMEM, mrgsolve, MATLAB, Monolix, SimCYP, PKSim, or equivalent platforms.
  • Experience working effectively in a cross-functional, matrixed collaborative environment.

Additional Skills/Preferences:

  • Make a purposeful impact with real patient outcomes - See your scientific contributions translate directly into better medicines for patients, with the opportunity to influence strategy and decisions that meaningfully improve lives worldwide.
  • Visible commitment to mentorship, sponsorship, and career growth - You will mentor and be mentored within a culture that actively invests in scientific leadership development, sponsorship, and progression for diverse talent across technical and peopleleader tracks.
  • Therapeutic area expertise within neuroscience.
  • Experience with PKPD or PBPK modeling applied to oligonucleotide therapeutics (ASO, siRNA), LNP delivery platforms, gene therapy (AAV or non-viral), and/or antibody-siRNA conjugates (ARCs).
  • Understanding of the outstanding disposition, intracellular delivery, tissue distribution, and Pharmacodynamics and durability of nucleic acid-based therapeutics.
  • Excellent self-management, organizational skills, and ability to manage multiple programs simultaneously.
  • Publication record in peer-reviewed journals in quantitative pharmacology, genetic medicines, or related fields.

Eli Lilly and Company, Lilly USA, LLC and our wholly owned subsidiaries (collectively "Lilly") are committed to help individuals with disabilities to participate in the workforce and ensure equal opportunity to compete for jobs. If you require an accommodation to submit a resume for positions at Lilly, please email Lilly Human Resources (Lilly_Recruiting_Compliance@lists.lilly.com) for further assistance. Please note This email address is intended for use only to request an accommodation as part of the application process. Any other correspondence will not receive a response.

Lilly is an EEO/Affirmative Action Employer and does not discriminate on the basis of age, race, color, religion, gender, sexual orientation, gender identity, gender expression, national origin, protected veteran status, disability or any other legally protected status.

Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form (https://careers.lilly.com/us/en/workplace-accommodation) for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.

Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.


Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia Network, Black Employees at Lilly, Chinese Culture Network, Japanese International Leadership Network (JILN), Lilly India Network, Organization of Latinx at Lilly (OLA), PRIDE (LGBTQ+ Allies), Veterans Leadership Network (VLN), Women's Initiative for Leading at Lilly (WILL), enAble (for people with disabilities). Learn more about all of our groups.

Actual compensation will depend on a candidate's education, experience, skills, and geographic location. The anticipated wage for this position is

$177,000 - $308,000

Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly's compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.

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About Eli Lilly

Sourced by ZipRecruiter

Eli Lilly, based in Indianapolis, IN, US, is one of the pioneers in the pharmaceutical industry with a rich history dating back to 1876. This global pharmaceutical company focuses on discovering, developing, manufacturing and selling pharmaceutical products in approximately 120 countries. The company's product categories include endocrinology, oncology, cardiovascular, neuroscience, and immunology. Having invested over $9 billion in research and development in the past decade, Eli Lilly is also committed to creating high-quality medicines that meet real needs. As a recipient of several awards and recognitions, Eli Lilly is known for its focus on life-saving research and drug development. Their mission is to make medicines that help people live longer, healthier, and more active lives.

Industry

Pharmaceutical product wholesalers

Company size

10,000+ Employees

Headquarters location

Indianapolis, IN, US

Year founded

1876