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Bioinformatics Software Engineer Jobs in Maryland

Axle

Data Engineer

Rockville, MD · On-site

$116K - $140K/yr

With experts in biomedical science, software engineering, and program management, we focus on ... Bachelor's degree in Computer Science, Data Science, Bioinformatics, Biomedical Informatics ...

Axle

Data Engineer

Rockville, MD

$116K - $140K/yr

With experts in biomedical science, software engineering, and program management, we focus on ... Bachelor's degree in Computer Science, Data Science, Bioinformatics, Biomedical Informatics ...

Axle

Data Engineer

Rockville, MD

$116K - $140K/yr

With experts in biomedical science, software engineering, and program management, we focus on ... Bachelor's degree in Computer Science, Data Science, Bioinformatics, Biomedical Informatics ...

Black Canyon Consulting

Engineering Team Leader

Bethesda, MD · On-site +1

$109K - $144K/yr

Master of Science degree in engineering, computer sciences, information systems, bioinformatics, or a related or emerging field. * 7+ years of experience leading complex software engineering or ...

Black Canyon Consulting

Engineering Team Leader

Bethesda, MD · On-site

$109K - $144K/yr

Master of Science degree in engineering, computer sciences, information systems, bioinformatics, or a related or emerging field. * 7+ years of experience leading complex software engineering or ...

Axle

Data Scientist II

Rockville, MD

With experts in biomedical science, software engineering, and program management, we focus on ... Bioinformatics Workflow and Data Pipeline Development: Design, build, and maintain reproducible ...

Axle

Data Scientist II

Rockville, MD · On-site

With experts in biomedical science, software engineering, and program management, we focus on ... Bioinformatics Workflow and Data Pipeline Development: Design, build, and maintain reproducible ...

Axle

Senior Full Stack Developer

Rockville, MD · On-site

... software development, prototyping, testing, and code reviews with a small team of developers • ... Required : • Bachelor's Degree in Computer Science, Data Science, Bioinformatics or other related ...

Axle

Senior Full Stack Developer

Rockville, MD · On-site

$120K - $145K/yr

With experts in biomedical science, software engineering, and program management, we focus on ... Bachelor's Degree in Computer Science, Data Science, Bioinformatics or other related field (years ...

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All JobsBioinformatics Software Engineer JobsBioinformatics Software Engineer Jobs in Maryland

Bioinformatics Software Engineer information

See Maryland salary details

$41.7K

$127.2K

$231.5K

How much do bioinformatics software engineer jobs pay per year?

As of Aug 8, 2026, the average yearly pay for bioinformatics software engineer in Maryland is $127,192.00, according to ZipRecruiter salary data. Most workers in this role earn between $93,200.00 and $152,400.00 per year, depending on experience, location, and employer.

What is a bioinformatics software engineer?

A Bioinformatics Software Engineer develops and maintains software tools, algorithms, and databases for analyzing biological data, such as genomic sequences and protein structures. They work at the intersection of computer science and biology, using programming languages like Python, Java, or R to process and interpret large-scale biological datasets. Their role is crucial in fields like genomics, drug discovery, and personalized medicine, where computational solutions help researchers derive meaningful insights from complex biological information.

What are the typical daily responsibilities of a bioinformatics software engineer?

As a Bioinformatics Software Engineer, your day-to-day responsibilities typically include designing, developing, and maintaining software tools or pipelines for analyzing biological data such as DNA, RNA, or protein sequences. You may collaborate closely with researchers and scientists to understand biological problems and translate them into computational solutions, reviewing and optimizing code for efficiency and scalability. Troubleshooting data processing issues, integrating new algorithms, and contributing to documentation are also common tasks. Additionally, you might participate in cross-functional meetings and keep up with emerging technologies and trends in the field.

What are the key skills and qualifications needed to thrive in the bioinformatics software engineer position, and why are they important?

To thrive as a Bioinformatics Software Engineer, you need a strong background in software development (especially with Python, R, or C++), algorithm design, and biological data analysis, usually supported by a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools, databases (like NCBI or Ensembl), version control systems (such as Git), and experience with cloud computing or high-performance computing environments is highly valued. Strong problem-solving skills, attention to detail, and the ability to collaborate effectively with biologists and data scientists set candidates apart. These competencies are crucial for efficiently developing reliable software solutions that support complex biological research and data-driven discoveries.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in Maryland? The most popular types of Bioinformatics Software Engineer jobs in Maryland are:
What are popular job titles related to Bioinformatics Software Engineer jobs in Maryland? For Bioinformatics Software Engineer jobs in Maryland, the most frequently searched job titles are:
What job categories do people searching Bioinformatics Software Engineer jobs in Maryland look for? The top searched job categories for Bioinformatics Software Engineer jobs in Maryland are:
What are popular job titles related to Bioinformatics Software Engineer jobs in MD? For Bioinformatics Software Engineer jobs in MD, the most frequently searched job titles are:
Bioinformatics Software Engineer jobs near you
Infographic showing various Bioinformatics Software Engineer job openings in Maryland as of August 2026, with employment types broken down into 33% Internship, 34% Full Time, and 33% Part Time. Highlights an 67% In-person, and 33% Remote job distribution, with an average salary of $127,192 per year, or $61.1 per hour.

Research Molecular Biologist

Precise Systems

Edgewood, MD • On-site

Full-time

Medical, Life, Retirement

Re-posted 16 days ago

Job description


Precise Systems delivers integrated, mission-ready solutions that advance warfighter readiness and strengthen our nation's most critical defense programs. Through the power of our combined capabilities, we provide deep expertise in Advanced Engineering; Digital Transformation; Electromagnetic Warfare; Interactive Training & Simulation; Physical Sciences Research; Platform Lifecycle Support; and Foreign Military Sales. Unified by decades of trusted performance and expanded through strategic growth, our team applies innovative technologies, engineering rigor, and customer-focused execution to solve complex challenges and accelerate mission success. Guided by our commitment to partnership, precision, and performance, we deliver the scalable solutions and technical excellence our customers depend on-today and into the future.
Precise Systems seeks a Biologist with molecular biology experience with a specific focus on 3rd generation sequencing and bioinformatics. This position heavily emphasizes sample preparation and method development for the analysis of biological samples, including bacteria, viruses, fungi, and toxins using Oxford Nanopore Technologies and Illumina sequencing platforms. The role requires dedicated problem-solving, keen attention to detail, and a strong foundation in general laboratory skills. The successful applicant will possess a demonstrated aptitude for working both independently and in collaboration with other team members, as this position spans multiple disciplines to include biologists, bioinformaticians, engineers, and material scientists
This role requires in-person support.
Duties:
  • Collaborate with a team to design, test, and deliver rapid, facile methods for identifying DNA and RNA pathogens using untargeted sequencing.
  • Develop detection methods in the laboratory, optimize and streamline them for field use, troubleshoot processes and equipment, and train and prepare for field demonstrations.
  • Execute standard microbiological methods for cell lysis, nucleic acid purification, DNA/RNA library preparation, and DNA/RNA library sequencing execution.
  • Utilize Oxford Nanopore Technologies MinION/GridION/PromethION and Illumina MiSeq/NextSeq platforms.
  • Assist in the development of advanced bioinformatics software for the detection of biological threats.
  • Assume responsibility for the routine maintenance, calibration, and troubleshooting of laboratory equipment, and coordinate complex repairs with outside service vendors.
  • Utilize robust general laboratory skills to ensure a safe, organized, and highly functional laboratory environment.
  • Keep detailed records of laboratory operations and compile data into regular technical reports.

Required Education:
  • PhD in Chemistry, Biology, Biochemistry, Bioinformatics, or a closely related field in the Life Sciences.

Required Experience:
  • 1-3 years of practical laboratory experience in standard microbiological methods for cell lysis, nucleic acid purification, DNA/RNA library preparation, and DNA/RNA library sequencing execution.
  • 1-3 years of practical experience analyzing sequencing data, de novo assembly, detection algorithm generation, annotation, and troubleshooting code--typically using Python and R
  • Proven experience in sample preparation techniques, particularly for complex matrices.
  • Strong general laboratory skills and direct experience with laboratory equipment maintenance.
  • Meticulous documentation in laboratory notebooks, authorship of technical reports, and drafting of standard operating procedures (SOPs).
  • Ability to function effectively as part of an interdisciplinary team.
  • Outstanding verbal and written communication skills for audiences with varying technical backgrounds.
  • Effective time management skills; self-starter; attention to detail.
  • Ability to independently design and execute experiments; strong critical thinking and problem-solving capabilities.

Desired Experience:
  • A background or operational experience in bioinformatics is a strong plus.
  • Interdisciplinary science experience (e.g., biochemistry, chemical biology, systems biology).
  • Demonstrated ability to quickly learn and apply concepts outside of one's core area of expertise.
  • Oxford Nanopore Technologies and Illumina sequencing experience.
  • Sample preparation strategies in a variety of matrices such as soil, aerosols, and water.

Must be able to obtain and maintain a Secret security clearance. Due to the sensitivity of customer-related requirements, U.S. Citizenship is required.
Precise Systems values employee contributions, promotes diverse opportunities for professional growth, and prioritizes overall well-being. Our comprehensive professional services benefits package includes health insurance, life and accidental death and dismemberment coverage, disability insurance, retirement plans, holiday pay, employee-managed leave, and professional growth opportunities.
We recognize exceptional performance and alignment with our core values through our STAR Award recognition program.
Compensation at Precise Systems is determined by various factors, including education, experience, skills, competencies, and contract-specific requirements. The salary range for this position is $68,952.32 to $103,428.48 (annualized USD). This range represents the standard pay for this role and is just one component of Precise Systems' total compensation package.
Precise Systems is committed to fair and equitable pay practices in alignment with applicable pay transparency laws and equal employment opportunity standards
Precise Systems is dedicated to a shared vision and core values of Integrity, Respect, and Responsibility, which foster innovation and drive our continued success in the global marketplace. Precise Systems and its subsidiaries are Equal Opportunity /Affirmative Action Employers. All qualified applicants will receive consideration for employment without regard to race, color, religion, age, sex, sexual orientation, gender identity, national origin, protected veteran status, status as an individual with a disability, or any legally protected status under federal, state, or local law. Visit www.GoPrecise.com for a listing of current openings and our comprehensive, employee friendly benefits summary. Precise Systems participates in E-Verify.

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