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Bioinformatics Software Engineer Jobs in Maryland

BCC-NIH

Program Principal Engineer

Bethesda, MD · Hybrid

... NCBI bioinformatics software and information retrieval systems * Work with a diverse group of ... Programming experience in a Linux environment * Proficiency in C++ * Experience with MS SQL server ...

Axle

Bioinformatics Engineer

Rockville, MD · On-site

They are seeking a Bioinformatics Engineer to join their team supporting major pharmaceutical ... software engineers to integrate pipelines into broader analytical ecosystems • Stay current with ...

BCC-NIH

Program Principal Engineer

Bethesda, MD · On-site

... NCBI bioinformatics software and information retrieval systems * Work with a diverse group of ... Programming experience in a Linux environment * Proficiency in C++ * Experience with MS SQL server ...

Guidehouse

Bioinformatics Scientist

Bethesda, MD · On-site

$65K - $108K/yr

Provide programming and troubleshooting support to the Federal Government in the dissemination of ... and programmatic software applications. * Present research findings at internal meetings ...

Guidehouse

Bioinformatics Scientist

Bethesda, MD

$65K - $108K/yr

Provide programming and troubleshooting support to the Federal Government in the dissemination of ... and programmatic software applications. * Present research findings at internal meetings ...

Black Canyon Consulting LLC

Data Engineer

Bethesda, MD · On-site

$122K - $146K/yr

... bioinformatic algorithms and developing cloud-ready tools and pipelines. Responsibilities : • You will work with a talented group of scientists and software developers to design, develop, test, and ...

Black Canyon Consulting LLC

Data Engineer

Bethesda, MD · On-site

$122K - $146K/yr

... bioinformatic algorithms and developing cloud-ready tools and pipelines. Responsibilities : • You will work with a talented group of scientists and software developers to design, develop, test, and ...

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All JobsBioinformatics Software Engineer JobsBioinformatics Software Engineer Jobs in Maryland

Bioinformatics Software Engineer information

See Maryland salary details

$41.7K

$127.2K

$231.5K

How much do bioinformatics software engineer jobs pay per year?

As of Aug 8, 2026, the average yearly pay for bioinformatics software engineer in Maryland is $127,192.00, according to ZipRecruiter salary data. Most workers in this role earn between $93,200.00 and $152,400.00 per year, depending on experience, location, and employer.

What is a bioinformatics software engineer?

A Bioinformatics Software Engineer develops and maintains software tools, algorithms, and databases for analyzing biological data, such as genomic sequences and protein structures. They work at the intersection of computer science and biology, using programming languages like Python, Java, or R to process and interpret large-scale biological datasets. Their role is crucial in fields like genomics, drug discovery, and personalized medicine, where computational solutions help researchers derive meaningful insights from complex biological information.

What are the typical daily responsibilities of a bioinformatics software engineer?

As a Bioinformatics Software Engineer, your day-to-day responsibilities typically include designing, developing, and maintaining software tools or pipelines for analyzing biological data such as DNA, RNA, or protein sequences. You may collaborate closely with researchers and scientists to understand biological problems and translate them into computational solutions, reviewing and optimizing code for efficiency and scalability. Troubleshooting data processing issues, integrating new algorithms, and contributing to documentation are also common tasks. Additionally, you might participate in cross-functional meetings and keep up with emerging technologies and trends in the field.

What are the key skills and qualifications needed to thrive in the bioinformatics software engineer position, and why are they important?

To thrive as a Bioinformatics Software Engineer, you need a strong background in software development (especially with Python, R, or C++), algorithm design, and biological data analysis, usually supported by a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools, databases (like NCBI or Ensembl), version control systems (such as Git), and experience with cloud computing or high-performance computing environments is highly valued. Strong problem-solving skills, attention to detail, and the ability to collaborate effectively with biologists and data scientists set candidates apart. These competencies are crucial for efficiently developing reliable software solutions that support complex biological research and data-driven discoveries.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in Maryland? The most popular types of Bioinformatics Software Engineer jobs in Maryland are:
What are popular job titles related to Bioinformatics Software Engineer jobs in Maryland? For Bioinformatics Software Engineer jobs in Maryland, the most frequently searched job titles are:
What job categories do people searching Bioinformatics Software Engineer jobs in Maryland look for? The top searched job categories for Bioinformatics Software Engineer jobs in Maryland are:
What are popular job titles related to Bioinformatics Software Engineer jobs in MD? For Bioinformatics Software Engineer jobs in MD, the most frequently searched job titles are:
Bioinformatics Software Engineer jobs near you
Infographic showing various Bioinformatics Software Engineer job openings in Maryland as of August 2026, with employment types broken down into 33% Internship, 34% Full Time, and 33% Part Time. Highlights an 67% In-person, and 33% Remote job distribution, with an average salary of $127,192 per year, or $61.1 per hour.

Program Principal Engineer

BCC-NIH

Bethesda, MD • Hybrid

Full-time

Medical, Dental, Vision, Retirement, PTO

Re-posted 18 days ago

Job description

Overview

Black Canyon Consulting (BCC)  is searching for a Program Principal Manager (C++ Software Developer) to support our work at the National Institutes of Health (NIH). This opportunity is full time and onsite/hybrid at the NIH in Bethesda, MD.

Duties & Responsibilities:
  • Responsible for the development, implementation, testing, and continued maintenance of NCBI bioinformatics software and information retrieval systems
  • Work with a diverse group of scientists, bioinformaticians and other developers across the center to implement efficient bioinformatics algorithms
  • Learn new technologies, keep up with internal systems, and share your knowledge with the team
Required qualifications:
  • 3+ years of experience handling large amounts of data or working in a distributed computing environment
  • Programming experience in a Linux environment
  • Proficiency in C++
  • Experience with MS SQL server and relational database design and optimization
  • Fluency in some scripting languages such as BASH, csh, Perl, or Python
Preferred qualifications:
  • 5+ years of working with genetic and biological data
  • Proficiency in Python and/or JavaScript and familiarity with their associated ecosystems
  • Experience with MongoDB or other NoSQL database technology
  • Experience with Docker or other containerization mechanisms
  • Experience with CI/CD pipelines, unit testing, integration and regression testing
  • Experience using GitHub
  • Experience with Cloud technologies a strong plus

We attract the best people in the business with our competitive benefits package that includes medical, dental and vision coverage, 401k plan with employer contribution, paid holidays, vacation, and tuition reimbursement. If you enjoy being a part of a high performing, professional service and technology focused organization, please apply today!

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