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Bioinformatics Software Developer Jobs (NOW HIRING)

BCC-NIH

Program Principal Engineer

Bethesda, MD · Hybrid

... Software Developer) to support our work at the National Institutes of Health (NIH) . This ... NCBI bioinformatics software and information retrieval systems * Work with a diverse group of ...

BCC-NIH

Program Principal Engineer

Bethesda, MD · On-site

... Software Developer) to support our work at the National Institutes of Health (NIH) . This ... NCBI bioinformatics software and information retrieval systems * Work with a diverse group of ...

Baylor Genetics

Sr HPC Engineer

Houston, TX · On-site

$96K - $132K/yr

MS with extensive industry experience may be considered. • 8+ years' experience in bioinformatics software engineering, computational genomics, or related field. • 4+ years' experience leading or ...

BiomeSense

Senior Bioinformatics Engineer

Chicago, IL · On-site

$125K - $200K/yr

The Position You'll help build our MetaBiome platform, a novel software solution for collection ... bioinformatics, data engineering, and product development. We're looking for someone who is excited ...

ACL Digital

Bioinformatics Engineer

Foster City, CA

$70 - $80/hr

Bioinformatics Engineer -- T2T Genome Assembly (Non model Organisms) Location: Foster City, CA ... solid software engineering practices (Git, testing, documentation). • Workflow + compute ...

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How much do bioinformatics software developer jobs pay per hour?

As of Jun 16, 2026, the average hourly pay for bioinformatics software developer in the United States is $42.79, according to ZipRecruiter salary data. Most workers in this role earn between $42.55 and $43.03 per hour, depending on experience, location, and employer.

What are some common challenges faced by Bioinformatics Software Developers in their daily work?

Bioinformatics Software Developers often work with large and complex biological datasets, which can present challenges in terms of data integration, processing efficiency, and scalability. Keeping up with rapidly evolving research methodologies and integrating new scientific findings into software solutions can also be demanding. Developers must collaborate closely with biologists, researchers, and other IT professionals to ensure that the tools they build meet scientific needs and are user-friendly. Strong problem-solving skills and adaptability help in overcoming technical and domain-specific obstacles, making this a dynamic and intellectually rewarding career choice.

What is a Bioinformatics Software Developer job?

A Bioinformatics Software Developer designs, implements, and optimizes software tools for analyzing biological data, such as genomic sequences or protein structures. They combine expertise in computer science, bioinformatics, and data science to develop algorithms, databases, and pipelines that support research and clinical applications. These developers often work with researchers to streamline data processing, improve efficiency, and enable new discoveries in the life sciences. Strong programming skills in languages like Python, Java, or R, along with knowledge of bioinformatics frameworks, are essential for this role.

What are the key skills and qualifications needed to thrive in the Bioinformatics Software Developer position, and why are they important?

To thrive as a Bioinformatics Software Developer, you need strong programming skills (especially in Python, R, or Java), a solid foundation in computational biology, and typically a degree in computer science, bioinformatics, or a related field. Familiarity with bioinformatics tools (such as BLAST, Bioconductor, or Galaxy), experience with version control systems like Git, and understanding databases and cloud platforms are commonly required. Collaboration, problem-solving abilities, and strong communication skills help facilitate effective teamwork across interdisciplinary scientific teams. These competencies are vital for developing robust software solutions that address complex biological data challenges encountered in research and healthcare settings.

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Bioinformatics Software Developer jobs near you
Infographic showing various Bioinformatics Software Developer job openings in the United States as of June 2026, with employment types broken down into 100% Full Time. Highlights an 80% Physical, 2% Hybrid, and 18% Remote job distribution, with an average salary of $89,000 per year, or $42.8 per hour.

Bioinformatics Software Engineer II, Pathology and Lab Medicine

Msk

New York, NY • Hybrid

$100K - $161K/yr

Full-time

Posted 3 days ago

Job description

About Us:

The people of Memorial Sloan Kettering Cancer Center (MSK) are united by a singular mission: ending cancer for life. Our specialized care teams provide personalized, compassionate, expert care to patients of all ages. Informed by basic research done at our Sloan Kettering Institute, scientists across MSK collaborate to conduct innovative translational and clinical research that is driving a revolution in our understanding of cancer as a disease and improving the ability to prevent, diagnose, and treat it. MSK is dedicated to training the next generation of scientists and clinicians, who go on to pursueour missionat MSK and around the globe.

Exciting Opportunity at MSK! Our Pathology and Laboratory Medicine Department is looking for aBioinformatics Software Engineerto join a dynamic team supporting stateoftheart molecular diagnostics and cancer genomics programs. You will play a key role in developing software tools, web applications, and data workflows that empower our clinicians and researchers to interpret complex genomic information and advance precision oncology.

Role Overview

Build web applications and APIs that enable genomic data visualization and clinical reporting

Collaborate closely with bioinformaticians, laboratory scientists, researchers, and clinicians to translate workflow needs into robust software solutions

Develop,optimize, andmaintaincomputational workflows for NGS data processing

Improve performance, scalability, and reliability of existing pipelines and tools

Ensure data quality, reproducibility, and proper documentation across all projects

Key Qualifications

BS in Bioinformatics, Computer Science, or related field + 5 years of experienceORMS in Bioinformatics, Computer Science, or related field + 2 years of experience

Strong programming skills in Python

Experience in web development (e.g., Flask, Django, React)

Experience with relational databases (PostgreSQL, MySQL) and/or NoSQL (MongoDB)

Hands-on experience with containerization (Docker, Kubernetes)

Familiarity with version control (Git/GitHub) and CI/CD workflows

Understanding of NGS data analysis workflows

Strong debugging, analytical, and problem-solving skills

Preferred:

Experience with cloud computing (AWS, GCP, or Azure)

Knowledge of cancer genomics, variant calling, and annotation

Core Skills

Ability to translate scientific and clinical needs into maintainable, welldesigned software

Strong communicationskills and comfort collaborating with multidisciplinary teams

Ability to work in fastpaced research and clinical environments

Commitment to reproducible, traceable, and welldocumented work

Additional Information

Schedule: hybrid, at least 2 days a week in office, mustresidein the NYC metro area

Location:Joy Building, 321 E 61stStreet, NYC

Reporting to: Manager, Bioinformatics Pathology and Laboratory Medicine

Helpful Links:

  • Compensation Philosophy

  • Benefits

Pay Range: $100,600.00 - $161,000.00FSLA Status: Exempt

Closing:

At MSK, we believe in fair, competitive pay that reflects your job, experience, and skills.

MSK is an equal opportunity and affirmative action employer committed to diversity and inclusion in all aspects of recruiting and employment. All qualified individuals are encouraged to apply and will receive consideration without regard to race, color, gender, gender identity or expression, sexual orientation, national origin, age, religion, creed, disability, veteran status or any other factor which cannot lawfully be used as a basis for an employment decision.

Federal law requires employers to provide reasonable accommodation to qualified individuals with disabilities. Please tell us if you require a reasonable accommodation to apply for a job or to perform your job. Examples of reasonable accommodation include making a change to the application process or work procedures, providing documents in an alternate format, using a sign language interpreter, or using specialized equipment.

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