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Bioinformatics Software Developer Jobs (NOW HIRING)

BCC-NIH

Software Developer (C++, Python)

Bethesda, MD · On-site +1

Overview Black Canyon Consulting (BCC) is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and ...

BCC-NIH

Software Developer (C++, Python)

Bethesda, MD · On-site

Overview Black Canyon Consulting (BCC) is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and ...

Ariadne

NCBI Software Developer (C++, Python)

Bethesda, MD · On-site +1

$52.25 - $70.50/hr

Overview Ariadne is searching for a Software Developer in Bioinformatics and Big Data to support our work at the National Institutes of Health. This opportunity is full time and onsite at the NIH in ...

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How much do bioinformatics software developer jobs pay per hour?

As of Jun 16, 2026, the average hourly pay for bioinformatics software developer in the United States is $42.79, according to ZipRecruiter salary data. Most workers in this role earn between $42.55 and $43.03 per hour, depending on experience, location, and employer.

What are some common challenges faced by Bioinformatics Software Developers in their daily work?

Bioinformatics Software Developers often work with large and complex biological datasets, which can present challenges in terms of data integration, processing efficiency, and scalability. Keeping up with rapidly evolving research methodologies and integrating new scientific findings into software solutions can also be demanding. Developers must collaborate closely with biologists, researchers, and other IT professionals to ensure that the tools they build meet scientific needs and are user-friendly. Strong problem-solving skills and adaptability help in overcoming technical and domain-specific obstacles, making this a dynamic and intellectually rewarding career choice.

What is a Bioinformatics Software Developer job?

A Bioinformatics Software Developer designs, implements, and optimizes software tools for analyzing biological data, such as genomic sequences or protein structures. They combine expertise in computer science, bioinformatics, and data science to develop algorithms, databases, and pipelines that support research and clinical applications. These developers often work with researchers to streamline data processing, improve efficiency, and enable new discoveries in the life sciences. Strong programming skills in languages like Python, Java, or R, along with knowledge of bioinformatics frameworks, are essential for this role.

What are the key skills and qualifications needed to thrive in the Bioinformatics Software Developer position, and why are they important?

To thrive as a Bioinformatics Software Developer, you need strong programming skills (especially in Python, R, or Java), a solid foundation in computational biology, and typically a degree in computer science, bioinformatics, or a related field. Familiarity with bioinformatics tools (such as BLAST, Bioconductor, or Galaxy), experience with version control systems like Git, and understanding databases and cloud platforms are commonly required. Collaboration, problem-solving abilities, and strong communication skills help facilitate effective teamwork across interdisciplinary scientific teams. These competencies are vital for developing robust software solutions that address complex biological data challenges encountered in research and healthcare settings.

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Bioinformatics Software Developer jobs near you
Infographic showing various Bioinformatics Software Developer job openings in the United States as of June 2026, with employment types broken down into 100% Full Time. Highlights an 80% Physical, 2% Hybrid, and 18% Remote job distribution, with an average salary of $89,000 per year, or $42.8 per hour.

Principal Bioinformatics Software Engineer

F. Hoffmann-La Roche Ltd

Santa Clara, CA • On-site

$165K - $308K/yr

Full-time

Posted 7 days ago

Job description

At Roche you can show up as yourself, embraced for the unique qualities you bring. Our culture encourages personal expression, open dialogue, and genuine connections, where you are valued, accepted and respected for who you are, allowing you to thrive both personally and professionally. This is how we aim to prevent, stop and cure diseases and ensure everyone has access to healthcare today and for generations to come. Join Roche, where every voice matters.
The Position
Roche Sequencing is not only changing science, but we are changing lives. Our software teams are laying the groundwork for the future by developing powerful bioinformatics algorithms, data analysis tools, and software/systems infrastructures so researchers and clinicians can make better health decisions faster. The path to curing cancer lies in ones and zeros as we work with next-generation genomic sequencing, a new frontier.
Do you want to develop software products that scientists and others in the life sciences will use to diagnose, find treatments, and eventually beat diseases like cancer? Our team builds highly scalable, reliable software and secure systems for better diagnostics. Come join us!
The Opportunity
  • As a Bioinformatics Software Engineer, you will design and develop automated verification tests for the bioinformatics components and pipelines that are used in Roche Sequencing products. You will be part of the team developing cutting-edge, distributed, scale-out Next-Generation Sequencing data analysis software to ensure the highest possible software quality for gene sequencing research and disease diagnostics.
  • Work closely with research and algorithm experts, accelerating bioinformatics techniques using GPU hardware. Support software development lifecycle and Design Control process, working closely with team members to continuously improve quality and feature sets of the software products, based on technical design and requirements specificationsWork closely with team members to continuously improve the quality and feature sets of software products. This includes supporting the software development lifecycle and Design Control process, based on technical design and requirements specifications.

Who You Are
  • B.S. or M.S. or PhD in Computational Biology or Bioinformatics or Biomedical engineering or related field.
  • 5+ years of experience in working with NGS data and bioinformatics pipeline verification.
  • Strong expertise in Python, including numerical computing and data science libraries.
  • Proficiency in AWS and Linux Shell environments
  • Experience designing, documenting and executing verification tests.
  • Be self-driven, detail oriented, analytical and proven ability to learn quickly.
  • Be a team player, customer focused with excellent interdisciplinary collaboration skills.

Preferred Qualifications
  • Proven expertise in Object-Oriented Programming (OOP) using C++, and practical experience utilizing GPU-accelerated C/C++ libraries.
  • Experience with CI/CD tools and concepts.
  • Software verification experience focusing on medical device software or regulated applications.

Relocation benefits are not available for this posting
The expected salary range for this position based on the primary location of California is $165,800 - $308,000 annual. Actual pay will be determined based on experience, qualifications, geographic location, and other job-related factors permitted by law. A discretionary annual bonus may be available based on individual and Company performance. This position also qualifies for the benefits detailed at the link provided below.
Benefits
Who we are
A healthier future drives us to innovate. Together, more than 100'000 employees across the globe are dedicated to advance science, ensuring everyone has access to healthcare today and for generations to come. Our efforts result in more than 26 million people treated with our medicines and over 30 billion tests conducted using our Diagnostics products. We empower each other to explore new possibilities, foster creativity, and keep our ambitions high, so we can deliver life-changing healthcare solutions that make a global impact.
Let's build a healthier future, together.
Roche is an equal opportunity employer. It is our policy and practice to employ, promote, and otherwise treat any and all employees and applicants on the basis of merit, qualifications, and competence. The company's policy prohibits unlawful discrimination, including but not limited to, discrimination on the basis of Protected Veteran status, individuals with disabilities status, and consistent with all federal, state, or local laws.
If you have a disability and need an accommodation in relation to the online application process, please contact us by completing this form Accommodations for Applicants.

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